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Search of human proteins with 13236565
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13236565 centromere protein O [Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13236565 centromere protein O [Homo sapiens] 598 e-171
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 37 0.021
gi|55749708 outer dense fiber of sperm tails 2-like isoform b [H... 37 0.021
gi|55749696 outer dense fiber of sperm tails 2-like isoform a [H... 37 0.021
gi|156104908 myosin heavy chain 6 [Homo sapiens] 35 0.11
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 33 0.31
gi|145312241 differentially expressed in FDCP 6 homolog [Homo sa... 32 0.68
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 32 0.68
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens] 32 0.89
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 32 0.89
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 31 1.2
gi|13540600 nudE nuclear distribution gene E homolog (A. nidulan... 31 1.2
gi|71284108 nudE nuclear distribution gene E homolog (A. nidulan... 31 1.2
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ... 31 1.5
gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo sap... 31 1.5
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 31 1.5
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 31 1.5
gi|7657017 hypothetical protein LOC25832 [Homo sapiens] 31 1.5
gi|29789405 hypothetical protein LOC284565 [Homo sapiens] 31 1.5
gi|83415174 hypothetical protein LOC400818 [Homo sapiens] 31 1.5
gi|157266285 hypothetical protein LOC728936 [Homo sapiens] 31 1.5
gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens] 31 1.5
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 2.0
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 2.0
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 2.0
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 30 2.0
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 30 2.0
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 2.6
gi|239741297 PREDICTED: neuroblastoma breakpoint family, member ... 30 2.6
gi|31982906 cingulin-like 1 [Homo sapiens] 30 2.6
>gi|13236565 centromere protein O [Homo sapiens]
Length = 300
Score = 598 bits (1541), Expect = e-171
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD 60
MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD
Sbjct: 1 MEQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD 60
Query: 61 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR 120
ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR
Sbjct: 61 ELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQAYHFTGLSGKLTSR 120
Query: 121 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL 180
GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL
Sbjct: 121 GVCVCISTAFEGNLLDSYFVDLVIQKPLRIHHHSVPVFIPLEEIAAKYLQTNIQHFLFSL 180
Query: 181 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK 240
CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK
Sbjct: 181 CEYLNAYSGRKYQADRLQSDFAALLTGPLQRNPLCNLLSFTYKLDPGGQSFPFCARLLYK 240
Query: 241 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS 300
DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS
Sbjct: 241 DLTATLPTDVTVTCQGVEVLSTSWEEQRASHETLFCTKPLHQVFASFTRKGEKLDMSLVS 300
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 37.0 bits (84), Expect = 0.021
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 21 LERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
LE LET ++ EE+ + Q G+ G IH+L ++R +L A +++++ A++
Sbjct: 1492 LEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASL 1551
Query: 81 EPNQ------TVEINE------------QEALEEKLENVKAILQAYHFTGLSGKLTSRGV 122
E + +E N+ E +E+ N ++ + T L + SR
Sbjct: 1552 EHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQ-TSLDAETRSRNE 1610
Query: 123 CVCISTAFEGNL 134
+ + EG+L
Sbjct: 1611 ALRVKKKMEGDL 1622
>gi|55749708 outer dense fiber of sperm tails 2-like isoform b [Homo
sapiens]
Length = 513
Score = 37.0 bits (84), Expect = 0.021
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 19 AHLERL----ETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVK 74
AH++ L +++ + + K + QSV+ L +IHK D+L+ V+ +
Sbjct: 25 AHIQELSCLFQSEKANTLKANRFSQSVKVVHERLQIQIHKREAENDKLKEYVKSLETKIA 84
Query: 75 ACIANVEPNQTVEINEQEALEEKLENVKAILQAY-----HFTGLSGKLTSR---GVCVCI 126
N+ I +EA +K +K + Y HFTG KLTS+
Sbjct: 85 KWNLQSRMNKNEAIVMKEASRQKTVALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLS 144
Query: 127 STAFEGNLLDSYFVDLVIQK 146
T N S++ +VI+K
Sbjct: 145 ETISASNAWKSHYEKIVIEK 164
>gi|55749696 outer dense fiber of sperm tails 2-like isoform a [Homo
sapiens]
Length = 644
Score = 37.0 bits (84), Expect = 0.021
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 19 AHLERL----ETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVK 74
AH++ L +++ + + K + QSV+ L +IHK D+L+ V+ +
Sbjct: 156 AHIQELSCLFQSEKANTLKANRFSQSVKVVHERLQIQIHKREAENDKLKEYVKSLETKIA 215
Query: 75 ACIANVEPNQTVEINEQEALEEKLENVKAILQAY-----HFTGLSGKLTSR---GVCVCI 126
N+ I +EA +K +K + Y HFTG KLTS+
Sbjct: 216 KWNLQSRMNKNEAIVMKEASRQKTVALKKASKVYKQRLDHFTGAIEKLTSQIRDQEAKLS 275
Query: 127 STAFEGNLLDSYFVDLVIQK 146
T N S++ +VI+K
Sbjct: 276 ETISASNAWKSHYEKIVIEK 295
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 21 LERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRD-------ELRAVVRHRRASV 73
LE LET ++ EE+ + Q G G +H+L ++R EL++ + AS+
Sbjct: 1494 LEHLETFKRENKNLQEEISDLTEQLGEGGKNVHELEKVRKQLEVEKLELQSALEEAEASL 1553
Query: 74 -----KACIANVEPNQ-TVEI-----NEQEALEEKLENVKAILQAYHFTGLSGKLTSRGV 122
K A +E NQ EI + E +E+ N + ++ + T L + SR
Sbjct: 1554 EHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHQRVVDSLQ-TSLDAETRSRNE 1612
Query: 123 CVCISTAFEGNL 134
+ + EG+L
Sbjct: 1613 VLRVKKKMEGDL 1624
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 33.1 bits (74), Expect = 0.31
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 4 ANPLRPDGESKGGVLAHLERLETQVSRSRKQSE------ELQSVQAQEGALGTKIHKLRR 57
A L P G ++ HL+RLET +S ++ + L + + L +K+HK +
Sbjct: 144 AMALGPLPREDGNLMLHLQRLETTLSVCAEEPDHGQLFTHLGRMALEFNRLASKVHKNEQ 203
Query: 58 LRDELRAVVRHRRASVKACIANVEPNQTVEINEQEAL-EEKLENVKAILQAYHFTGLSGK 116
L+ + R +A A ++ E L EE LE K ++ + G SG+
Sbjct: 204 RTSILQTLCEQLRKENEALKAKLDKGLEQRDQAAERLREENLELKKLLMSNGNKEGASGR 263
>gi|145312241 differentially expressed in FDCP 6 homolog [Homo
sapiens]
Length = 631
Score = 32.0 bits (71), Expect = 0.68
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 24/100 (24%)
Query: 7 LRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVV 66
LR +++ + A +E E + +R R++ +EL+ +Q +RL++ L+ V
Sbjct: 400 LREAEQARASMQAEMELKEEEAARQRQRIKELEEMQ-------------QRLQEALQLEV 446
Query: 67 RHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAILQ 106
+ RR ++V I + LEE+ E +K ++Q
Sbjct: 447 KARR-----------DEESVRIAQTRLLEEEEEKLKQLMQ 475
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 32.0 bits (71), Expect = 0.68
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 20 HLER-LETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDE-LRAV--VRHRRASVKA 75
HLER LE + + + EL++ Q + LGT++ +LR +E L A+ ++ +++
Sbjct: 1497 HLERALEERRRQEEEMQRELEAAQRESRGLGTELFRLRHGHEEALEALETLKRENKNLQE 1556
Query: 76 CIANVEPNQTV---EINEQEALEEKLENVKAILQA 107
I+++ ++ I E E ++ LE K+ +QA
Sbjct: 1557 EISDLTDQVSLSGKSIQELEKTKKALEGEKSEIQA 1591
Score = 28.5 bits (62), Expect = 7.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 2 EQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEE-----------LQSVQAQEGA-LG 49
E + L G + G + E ++ R R++ EE L+ QA+ A LG
Sbjct: 1194 ELSERLEEAGGASAGQREGCRKREAELGRLRRELEEAALRHEATVAALRRKQAEGAAELG 1253
Query: 50 TKIHKLRRLRDELRAVVRHRRASVKACIANVE 81
++ L+R+R +L R V ANVE
Sbjct: 1254 EQVDSLQRVRQKLEKEKSELRMEVDDLAANVE 1285
>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
Length = 3628
Score = 31.6 bits (70), Expect = 0.89
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 350 EEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEH----LQALLTPY 405
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 406 EPDKSQGQDLQEQLAEGCRLAQHLVQ 431
Score = 30.4 bits (67), Expect = 2.0
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V +QE L KLR RD R++ H ++A +
Sbjct: 79 EEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEH----LQALLTPD 134
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 135 EPDKSQGQDLQEQLAEGCRLAQHLVQ 160
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 31.6 bits (70), Expect = 0.89
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 4 ANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDE-L 62
+N L E KG + + + E + S+ E+L++ L +++H+ ++++ +
Sbjct: 2325 SNSLEKCKEQKGNLEGIIRQQEADIQNSKFSYEQLETDLQASRELTSRLHEEINMKEQKI 2384
Query: 63 RAVVRHRRASVKACIANVEPNQTVEINEQEAL--EEKLENV 101
+++ + +++ IA + EI E E L +E+ EN+
Sbjct: 2385 ISLLSGKEEAIQVAIAELRQQHDKEIKELENLLSQEEEENI 2425
Score = 28.5 bits (62), Expect = 7.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 22 ERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACI---A 78
E +ET +S + EEL+ V+ + L K L +D L V+ + ++ + A
Sbjct: 1712 ECMETLLSSNASMKEELERVKMEYETLSKKFQSLMSEKDSLSEEVQDLKHQIEGNVSKQA 1771
Query: 79 NVEPNQTVEINEQEALEEKLENV 101
N+E + + N+ EE +++
Sbjct: 1772 NLEATEKHD-NQTNVTEEGTQSI 1793
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 21 LERLETQVSRSRKQSE------ELQSVQAQEGAL-GTKIHKLRRLRDELRAVVRHRRASV 73
LE L+ Q+ + +KQ + EL AQ+ L +I RL EL + ++ +
Sbjct: 1124 LEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKI 1183
Query: 74 KACIANVEPNQTVEINEQEALEEKLENVKAILQAY 108
+ ++E ++ +QE L+E++ ++++ +Q Y
Sbjct: 1184 E----DLEQEIKIQKQKQETLQEEITSLQSSVQQY 1214
>gi|13540600 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform B [Homo sapiens]
Length = 345
Score = 31.2 bits (69), Expect = 1.2
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 EQAN-PLRPDGES-KGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHK-LRRL 58
EQ N L+ D + K V A E+LE Q ++S KQ L+ +Q A+ ++HK +R L
Sbjct: 59 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 118
Query: 59 RDELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAIL 105
+ R +RA++ + + E I LE +L+ +++L
Sbjct: 119 EQANDDLERAKRATI-VSLEDFEQRLNQAIERNAFLESELDEKESLL 164
>gi|71284108 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform A [Homo sapiens]
Length = 328
Score = 31.2 bits (69), Expect = 1.2
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 EQAN-PLRPDGES-KGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHK-LRRL 58
EQ N L+ D + K V A E+LE Q ++S KQ L+ +Q A+ ++HK +R L
Sbjct: 59 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 118
Query: 59 RDELRAVVRHRRASVKACIANVEPNQTVEINEQEALEEKLENVKAIL 105
+ R +RA++ + + E I LE +L+ +++L
Sbjct: 119 EQANDDLERAKRATI-VSLEDFEQRLNQAIERNAFLESELDEKESLL 164
>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
sapiens]
Length = 4621
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 350 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 405
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 406 EPDKSQGQDLQEQLAEGCRLAQHLVQ 431
Score = 29.3 bits (64), Expect = 4.4
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V +QE L KLR RD R++ H ++A +
Sbjct: 79 EEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEH----LQALLTLD 134
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 135 EPDKSQGQDLQEQLAEGCRLAQHLVQ 160
>gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo
sapiens]
Length = 3815
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 99 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 154
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 155 EPDKSQGQDLQEQLAEGCRLAQHLVQ 180
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 2 EQANPLRPDGESKGGVLAHLERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDE 61
++ LR + K + L+ ++S S + EL+ + ++ ++I +L+ +D
Sbjct: 1347 QELEELRKSLQEKDATIRTLQENNHRLSDSIAATSELERKEHEQ--TDSEIKQLKEKQDV 1404
Query: 62 LRAVVRHRRASVKAC---IANVEPNQTVEINEQEALEEKLENVK 102
L+ +++ + +KA + + N T ++NE E L + + N+K
Sbjct: 1405 LQKLLKEKDLLIKAKSDQLLSSNENFTNKVNENELLRQAVTNLK 1448
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/132 (18%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 21 LERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
L++LET ++ +E+ + Q G +IH+L +++ ++ +A+++ A++
Sbjct: 1496 LDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSELQAALEEAEASL 1555
Query: 81 EPNQ------TVEINE------------QEALEEKLENVKAILQAYHFTGLSGKLTSRGV 122
E + +E+N+ E +++ N I+++ T L ++ SR
Sbjct: 1556 EHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQMKRNHIRIVESMQST-LDAEIRSRND 1614
Query: 123 CVCISTAFEGNL 134
+ + EG+L
Sbjct: 1615 AIRLKKKMEGDL 1626
>gi|7657017 hypothetical protein LOC25832 [Homo sapiens]
Length = 921
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 10 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 65
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 66 EPDKSQGQDLQEQLAEGCRLAQHLVQ 91
>gi|29789405 hypothetical protein LOC284565 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 79 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 134
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 135 EPDKSQGQDLQEQLAEGCRLTQHLVQ 160
>gi|83415174 hypothetical protein LOC400818 [Homo sapiens]
Length = 942
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 350 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 405
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 406 EPDKSQGQDLQEQLAEGCRLAQHLVQ 431
Score = 29.6 bits (65), Expect = 3.4
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V +QE L KLR RD R++ H ++A +
Sbjct: 79 EEKLAEQLKQAEELRQYKVLVHSQERELTQLKEKLREGRDASRSLNEH----LQALLTPD 134
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 135 EPDKSQGQDLQEQLAEGCRLAQHLVQ 160
>gi|157266285 hypothetical protein LOC728936 [Homo sapiens]
Length = 670
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 25 ETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACIANV 80
E +++ KQ+EEL+ V AQE L KLR RD R++ H ++A +
Sbjct: 79 EEKLAEQLKQAEELRQYKVLVHAQERELTQLREKLREGRDASRSLNEH----LQALLTPD 134
Query: 81 EPNQTVEINEQEALEEKLENVKAILQ 106
EP+++ + QE L E + ++Q
Sbjct: 135 EPDKSQGQDLQEQLAEGCRLTQHLVQ 160
>gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]
Length = 1261
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 2 EQANPLRPDGESKGGVLAHLERLE----TQVSRSRKQSEELQSVQAQEGALGTKIHKLRR 57
EQ L + K L ++R + + S R + E L S L ++ K RR
Sbjct: 314 EQNKMLEAENALKKAKLLCMQRQDEYEKAKSSMFRAEEEHLSSSGGLAKNLNKQLEKKRR 373
Query: 58 LRDELRAVVRHRRASVKACIANVEPNQT-VEINEQEALEE 96
L +E V K C+ NVE + +E ++E L +
Sbjct: 374 LEEEALQKVEEANELYKVCVTNVEERRNDLENTKREILAQ 413
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 22 ERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLR----------RLRDELRAVVRHRRA 71
E LET + + + EEL +++ + +L ++ L+ L +EL+ V+ +
Sbjct: 749 ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDG 808
Query: 72 SVKACIANVEPNQTVEINEQEALEEKLENVKAI 104
+K+ +E N+++ +++ + +KA+
Sbjct: 809 KIKSVEELLEAELLKVANKEKTVQDLKQEIKAL 841
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 22 ERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLR----------RLRDELRAVVRHRRA 71
E LET + + + EEL +++ + +L ++ L+ L +EL+ V+ +
Sbjct: 749 ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDG 808
Query: 72 SVKACIANVEPNQTVEINEQEALEEKLENVKAI 104
+K+ +E N+++ +++ + +KA+
Sbjct: 809 KIKSVEELLEAELLKVANKEKTVQDLKQEIKAL 841
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/93 (19%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 22 ERLETQVSRSRKQSEELQSVQAQEGALGTKIHKLR----------RLRDELRAVVRHRRA 71
E LET + + + EEL +++ + +L ++ L+ L +EL+ V+ +
Sbjct: 749 ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDG 808
Query: 72 SVKACIANVEPNQTVEINEQEALEEKLENVKAI 104
+K+ +E N+++ +++ + +KA+
Sbjct: 809 KIKSVEELLEAELLKVANKEKTVQDLKQEIKAL 841
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/82 (21%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 23 RLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASV-KACIANVE 81
RLE + + K+++++Q + ++G +IH L+ + D V+ R+ +V + I N++
Sbjct: 530 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLD-----VKERKVNVLQKKIENLQ 584
Query: 82 PNQTVEINEQEALEEKLENVKA 103
+ + +L+E++++++A
Sbjct: 585 EQLRDKEKQMSSLKERVKSLQA 606
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/82 (21%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 23 RLETQVSRSRKQSEELQSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASV-KACIANVE 81
RLE + + K+++++Q + ++G +IH L+ + D V+ R+ +V + I N++
Sbjct: 502 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLD-----VKERKVNVLQKKIENLQ 556
Query: 82 PNQTVEINEQEALEEKLENVKA 103
+ + +L+E++++++A
Sbjct: 557 EQLRDKEKQMSSLKERVKSLQA 578
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 2.6
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 22 ERLETQVSRSRKQSEEL----QSVQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKACI 77
E L Q + RKQ E++ + ++ QEG + + K+RR LR + R
Sbjct: 241 EELREQEKKIRKQEEKMWRQEERLREQEGKMREQEEKMRRQEKRLREQEKELR------- 293
Query: 78 ANVEPNQTVEINEQEALEEKLENVK 102
Q E+ EQ+ L E+ E ++
Sbjct: 294 -----EQEKELREQKKLREQEEQMQ 313
>gi|239741297 PREDICTED: neuroblastoma breakpoint family, member 9
[Homo sapiens]
Length = 299
Score = 30.0 bits (66), Expect = 2.6
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 21 LERLETQVSRSRKQSEELQS----VQAQEGALGTKIHKLRRLRDELRAVVRHRRASVKAC 76
L+ E +++ KQ+EEL+ V +QE L KLR RD R++ H ++A
Sbjct: 75 LQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEH----LQAL 130
Query: 77 IANVEPNQTVEINEQEALEEKLENVKAILQ 106
+ EP+++ + QE L E + ++Q
Sbjct: 131 LTPDEPDKSQGQDLQEQLAEGCRLAQHLVQ 160
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 24 LETQVSRSRKQSEELQSVQAQEGALGTKIH----KLRRLRDELRAVVRHRRASVKACIAN 79
L ++SRSR+Q E+L++ QE A + L R +L++ + H S ++
Sbjct: 1087 LSERISRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEG 1146
Query: 80 VEPNQTVEINEQEALEEKLENVKAILQ 106
+ I E E E E +A LQ
Sbjct: 1147 LVVQMEARIAELEDRLESEERDRANLQ 1173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,105,203
Number of Sequences: 37866
Number of extensions: 468888
Number of successful extensions: 1564
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 143
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.