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Search of human proteins with 108796653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|108796653 phosphoglycolate phosphatase [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|108796653 phosphoglycolate phosphatase [Homo sapiens] 642 0.0
gi|10092677 pyridoxal phosphatase [Homo sapiens] 253 1e-67
gi|33636766 phospholysine phosphohistidine inorganic pyrophospha... 75 1e-13
gi|14149777 haloacid dehalogenase-like hydrolase domain containi... 72 9e-13
gi|23308749 N-acetylneuraminic acid phosphatase [Homo sapiens] 41 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.99
gi|41872374 polo-like kinase 3 [Homo sapiens] 32 0.99
gi|22779860 forkhead box L1 [Homo sapiens] 32 0.99
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 31 1.3
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 31 1.3
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 31 1.3
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 2.2
gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo sap... 30 2.2
gi|14861834 cat eye syndrome chromosome region, candidate 5 isof... 30 2.2
gi|18079216 CASK interacting protein 1 [Homo sapiens] 30 2.9
gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens] 30 2.9
gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo sap... 30 2.9
gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo ... 30 2.9
gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo ... 30 2.9
gi|169162742 PREDICTED: hypothetical protein [Homo sapiens] 30 2.9
gi|21914862 cat eye syndrome chromosome region, candidate 5 isof... 30 3.7
gi|12597625 activating transcription factor 5 [Homo sapiens] 29 4.9
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 29 4.9
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 29 6.4
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 29 6.4
gi|153070260 myristoylated alanine-rich protein kinase C substra... 28 8.4
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 28 8.4
gi|150418009 transforming, acidic coiled-coil containing protein... 28 8.4
gi|171543850 RUN domain containing 1 [Homo sapiens] 28 8.4
>gi|108796653 phosphoglycolate phosphatase [Homo sapiens]
Length = 321
Score = 642 bits (1655), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG 60
MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG
Sbjct: 1 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARG 60
Query: 61 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK 120
KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK
Sbjct: 61 KRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPK 120
Query: 121 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK 180
AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK
Sbjct: 121 AYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMK 180
Query: 181 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI 240
LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI
Sbjct: 181 LTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFI 240
Query: 241 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK 300
FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK
Sbjct: 241 FDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSK 300
Query: 301 KKMVPDFYVDSIADLLPALQG 321
KKMVPDFYVDSIADLLPALQG
Sbjct: 301 KKMVPDFYVDSIADLLPALQG 321
>gi|10092677 pyridoxal phosphatase [Homo sapiens]
Length = 296
Score = 253 bits (647), Expect = 1e-67
Identities = 146/312 (46%), Positives = 189/312 (60%), Gaps = 20/312 (6%)
Query: 11 ARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRALRARGKRLGFITNNS 70
ARC RL + +L +LFDCDGVLW GE AVPGAPE L L GK F++NNS
Sbjct: 2 ARCERLRGAALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNS 61
Query: 71 SKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAP-APKA-YVLGSPA 128
+ R A + RLGFGG ++F +A C A LRQRL G P AP A +VLG
Sbjct: 62 RRARPELALRFARLGFGGLRAE----QLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEG 117
Query: 129 LAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTKALRYL 188
L AEL A G+ G +P G+G P VRAV+VG+D HFS+ KL +A +L
Sbjct: 118 LRAELRAAGLRLAG---DPSAGDGAA--------PRVRAVLVGYDEHFSFAKLREACAHL 166
Query: 189 QQPGCLLVGTNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFIFDCVSQEY 248
+ P CLLV T+ D PL +G GTG L AVE A+ RQA ++GKPS ++F+C+++ +
Sbjct: 167 RDPECLLVATDRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITENF 226
Query: 249 GINPERTVMVGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSKKKMVPDFY 308
I+P RT+MVGDRL+TDIL G CG+ T+LTLTGVS L + Q + +VP +Y
Sbjct: 227 SIDPARTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEA---QAYLAAGQHDLVPHYY 283
Query: 309 VDSIADLLPALQ 320
V+SIADL L+
Sbjct: 284 VESIADLTEGLE 295
>gi|33636766 phospholysine phosphohistidine inorganic pyrophosphate
phosphatase [Homo sapiens]
Length = 270
Score = 74.7 bits (182), Expect = 1e-13
Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 52/302 (17%)
Query: 25 LADVDTLLFDCDGVLWR----GETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEK 80
LA V +L D GVL+ G TA+ G+ EA+ L+ ++ F TN S K+RA +
Sbjct: 8 LAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESQKSRAELVGQ 67
Query: 81 LRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVAS 140
L+RLGF + EV A L++R + Y+L + +E + + ++
Sbjct: 68 LQRLGFDI-----SEQEVTAPAPAACQILKER-----GLRPYLLIHDGVRSEFDQIDTSN 117
Query: 141 VGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTKA---LRYLQQPGCLLVG 197
V+ FSY + A L L++P + +G
Sbjct: 118 PNC-----------------------VVIADAGESFSYQNMNNAFQVLMELEKPVLISLG 154
Query: 198 TNMDNRLPLENGRFIAGTGCLVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGINPERTVM 257
R E + G ++A+E A +A+++GKPS F Q G+ + VM
Sbjct: 155 RG---RYYKETSGLMLDVGPYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAVM 211
Query: 258 VGDRLDTDILLGATCGLKTILTLTGVSTLGDVKNNQESDCVSKKKMVPDFYVDSIADLLP 317
+GD + D+ CG++ + TG D + ++ D YVD++A+ +
Sbjct: 212 IGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHH---------PEVKADGYVDNLAEAVD 262
Query: 318 AL 319
L
Sbjct: 263 LL 264
>gi|14149777 haloacid dehalogenase-like hydrolase domain containing
2 [Homo sapiens]
Length = 259
Score = 71.6 bits (174), Expect = 9e-13
Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 37/253 (14%)
Query: 31 LLFDCDGVLWRGETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPA 90
+L D G L + AVPGA EAL+ LR + F+TN + +++ E+LR+L F
Sbjct: 10 VLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEF---- 65
Query: 91 GPGASLEVFGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQG 150
++ T+L + L + +L + + + +
Sbjct: 66 ------DISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTS----------- 108
Query: 151 EGPGDWLHAPLEPDVRAVVVGFDP-HFSYMKLTKALRYLQQPGCLLVGTNMDNRLPLENG 209
D AVV+G P HF Y L +A R L G L+ + ++G
Sbjct: 109 -------------DPNAVVMGLAPEHFHYQILNQAFRLLLD-GAPLIAIHKARYYKRKDG 154
Query: 210 RFIAGTGCLVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGINPERTVMVGDRLDTDILLG 269
+ G G V A+E A +A ++GKP + F + G PE VM+GD D+
Sbjct: 155 LAL-GPGPFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGA 213
Query: 270 ATCGLKTILTLTG 282
G+ IL TG
Sbjct: 214 QDVGMLGILVKTG 226
>gi|23308749 N-acetylneuraminic acid phosphatase [Homo sapiens]
Length = 248
Score = 40.8 bits (94), Expect = 0.002
Identities = 46/163 (28%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 158 HAPLEPDVRAVVVGFDPHFSYMKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGC 217
H L DV+A++ +L K +R LL+ TN D + E A
Sbjct: 107 HMTLAEDVKAMLT---------ELRKEVR-------LLLLTNGDRQTQREKIEACACQSY 150
Query: 218 LVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGINPERTVMVGDRLDTDILLGATCGLKTI 277
V QR+ KP+ IF G+ P VMVGD L+TDI G GLK
Sbjct: 151 FDAVVVGGEQREE----KPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKAT 206
Query: 278 LTLTGVSTLGDVKNNQESDCVSKKKMVPDFYVDSIADLLPALQ 320
+ + N+ K VP + V S+ +L LQ
Sbjct: 207 VWI-----------NKNGIVPLKSSPVPHYMVSSVLELPALLQ 238
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.6 bits (70), Expect = 0.99
Identities = 35/115 (30%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 43 ETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEV---F 99
E A APE A RAR R R L GPA P A L
Sbjct: 80 EGAPGAAPEPPPAGRAR-------PGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEG 132
Query: 100 GTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPG 154
C + +A P P PA A L A G GP P G GPG
Sbjct: 133 SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPG 187
>gi|41872374 polo-like kinase 3 [Homo sapiens]
Length = 646
Score = 31.6 bits (70), Expect = 0.99
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 158 HAPLEPDVRAVVVGFDPHFSYMKLTKALRYLQQPGCLLVGTNMDNRLPLENGRFIAGTGC 217
H LEP+VR + ++ L+YL Q G L + N EN G
Sbjct: 155 HTLLEPEVR---------YYLRQILSGLKYLHQRGILHRDLKLGNFFITENMELKVGDFG 205
Query: 218 LVRAVEMAAQRQADIIGKPSRFIFDCVSQEYGINPERTV 256
L +E QR+ I G P+ ++ V G PE V
Sbjct: 206 LAARLEPPEQRKKTICGTPN-YVAPEVLLRQGHGPEADV 243
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 31.6 bits (70), Expect = 0.99
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 47/135 (34%)
Query: 47 PGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTA 106
PGAPEA R + R+A A+ G GG +GP S
Sbjct: 149 PGAPEAKRP------------RAETHQRSAEAQPEAGSGAGG-SGPAIS----------- 184
Query: 107 LYLRQRLAGAPAPKAYVLGSPALAAELE--------------AVGVASVGVGPEPLQGEG 152
RL APA + +L P+ A L A G A+V VG G+G
Sbjct: 185 -----RLQAAPAGPSPLLDGPSPPAPLHWPGTASPNEDAGDAAQGAAAVAVGQAARTGDG 239
Query: 153 PGDWLHAPLEPDVRA 167
PG +PL P R+
Sbjct: 240 PG----SPLRPASRS 250
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 115 GAPAPKAYVLGSPALAAEL-----EAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAV 168
GAPAP PA + E G+ +G P + EGPGD AP E + +AV
Sbjct: 52 GAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 115 GAPAPKAYVLGSPALAAEL-----EAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAV 168
GAPAP PA + E G+ +G P + EGPGD AP E + +AV
Sbjct: 52 GAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 115 GAPAPKAYVLGSPALAAEL-----EAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAV 168
GAPAP PA + E G+ +G P + EGPGD AP E + +AV
Sbjct: 52 GAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 30.4 bits (67), Expect = 2.2
Identities = 40/134 (29%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 42 GETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGT 101
G+ VPG P A+ L RG+R EK G GP GP S GT
Sbjct: 693 GDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEK-GMAGGHGPDGPKGSPGPSGT 751
Query: 102 AYCT------ALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGD 155
T + + +AG P PK G AE A + G+ P PL GP
Sbjct: 752 PGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGL-PGPLGPPGPAG 810
Query: 156 WLHAPLEPDVRAVV 169
EP R +V
Sbjct: 811 PTGEKGEPGPRGLV 824
>gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 2.2
Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 66 ITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPKAYVLG 125
+ + TR + KLR G GP P + V G A C L+G AP+ +
Sbjct: 11 LATQMADTRDSLGRKLREEGGPGPGLPRGTGLVPGAAGCPRAPCGVCLSGLDAPRGQLRQ 70
Query: 126 SPALAAELEAVGVASVGVGPEP--LQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTK 183
L EL G ++ P+ L GPG L + G PH+S ++L
Sbjct: 71 PQQLVRELS--GCRALRGCPKVFLLLSSGPGSSLEPGAFLAGLRELCGRSPHWSLVQLLT 128
Query: 184 AL 185
L
Sbjct: 129 EL 130
>gi|14861834 cat eye syndrome chromosome region, candidate 5 isoform
2 precursor [Homo sapiens]
Length = 423
Score = 30.4 bits (67), Expect = 2.2
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 2 AAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRAL-RARG 60
AA A G R R A L D DGVL RG +P A +A R L ++G
Sbjct: 20 AARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQG 79
Query: 61 K---RLGFITNNSSKTRAAYAEKLRRL 84
+ + F+TN + + + A++L L
Sbjct: 80 QLRVPVVFVTNAGNILQHSKAQELSAL 106
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 30.0 bits (66), Expect = 2.9
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 114 AGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLE 162
A P+P A L PA A A+ P P +G PGD LE
Sbjct: 1326 AKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLE 1374
>gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 2.9
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 45 AVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRR------LGFGGPAGPGASLEV 98
A PG + L A RG+RL T T + LRR L P G SL +
Sbjct: 122 AGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTL 181
Query: 99 FGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVG 142
+ +L L + P+++V SP E EA G A G
Sbjct: 182 -------SQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSG 218
>gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 30.0 bits (66), Expect = 2.9
Identities = 31/120 (25%), Positives = 42/120 (35%)
Query: 66 ITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLAGAPAPKAYVLG 125
+ + TR + KLR G GP P + V G A C L+G AP+ +
Sbjct: 11 LATQMADTRDSLGRKLREEGGPGPGLPRGTGLVPGAAGCPRAPCGVCLSGLDAPRGQLRQ 70
Query: 126 SPALAAELEAVGVASVGVGPEPLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTKAL 185
L EL L GPG L + G PH+S ++L L
Sbjct: 71 PQQLVRELSGCRALRGCPRVFLLLSSGPGSSLEPGAFLAGLRELCGRSPHWSLVQLLTEL 130
>gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo
sapiens]
Length = 282
Score = 30.0 bits (66), Expect = 2.9
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 45 AVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRR------LGFGGPAGPGASLEV 98
A PG + L A RG+RL T T + LRR L P G SL +
Sbjct: 143 AGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTL 202
Query: 99 FGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVG 142
+ +L L + P+++V SP E EA G A G
Sbjct: 203 -------SQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSG 239
>gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo
sapiens]
Length = 282
Score = 30.0 bits (66), Expect = 2.9
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 45 AVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRR------LGFGGPAGPGASLEV 98
A PG + L A RG+RL T T + LRR L P G SL +
Sbjct: 143 AGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTL 202
Query: 99 FGTAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVG 142
+ +L L + P+++V SP E EA G A G
Sbjct: 203 -------SQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSG 239
>gi|169162742 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 30.0 bits (66), Expect = 2.9
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 47 PGAPEALRALRA--RGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVF---GT 101
PG +LRA A RG +G +T S+ A A +R GP GP L +
Sbjct: 160 PGPLPSLRAQEAGRRGNAVGGVTGTGSRLHAPGARGSQRPSARGPRGPLPGLAAWCYRPR 219
Query: 102 AYCTALYLRQRLAG 115
A C A +Q L G
Sbjct: 220 ARCAASEPQQTLRG 233
>gi|21914862 cat eye syndrome chromosome region, candidate 5
isoform 1 [Homo sapiens]
Length = 393
Score = 29.6 bits (65), Expect = 3.7
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 32 LFDCDGVLWRGETAVPGAPEALRAL-RARGK---RLGFITNNSSKTRAAYAEKLRRL 84
L D DGVL RG +P A +A R L ++G+ + F+TN + + + A++L L
Sbjct: 20 LLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSAL 76
>gi|12597625 activating transcription factor 5 [Homo sapiens]
Length = 282
Score = 29.3 bits (64), Expect = 4.9
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 126 SPALAAELEAVGVASVG---VGPEPLQGEGPGDWLH--------APLEP 163
+PA A E +G A G VG EPL G+G DW+ PLEP
Sbjct: 33 APAPLAPYEVLGGALEGGLPVGGEPLAGDGFSDWMTERVDFTALLPLEP 81
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 29.3 bits (64), Expect = 4.9
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 143 VGPE--PLQGEGPGDWLHAPLEPDVRAVVVGFDPHFSYMKLTKALRYLQQPGCLLVGTNM 200
+GP+ P Q PG W+H + +AV G P + ++ L G LV + M
Sbjct: 741 IGPQQPPPQPRAPGKWVHGSSQQPAQAVGAGLSPLGQWPGISDLSSDLYSLG--LVSSYM 798
Query: 201 DN 202
DN
Sbjct: 799 DN 800
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 28.9 bits (63), Expect = 6.4
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 42 GETAVPGAPEALRALRARGKRLGF-ITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFG 100
G +PG P A RAL G+ + AA A L F G +G +LE+ G
Sbjct: 568 GVPELPGLPSATRALELSGQPVATGALELPGPLMAAGA-----LEFSGQSGAAGALELLG 622
Query: 101 TAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVAS 140
T + GAP + + AL +++V S
Sbjct: 623 QPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTS 662
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 28.9 bits (63), Expect = 6.4
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 42 GETAVPGAPEALRALRARGKRLGF-ITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFG 100
G +PG P A RAL G+ + AA A L F G +G +LE+ G
Sbjct: 568 GVPELPGLPSATRALELSGQPVATGALELPGPLMAAGA-----LEFSGQSGAAGALELLG 622
Query: 101 TAYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVAS 140
T + GAP + + AL +++V S
Sbjct: 623 QPLATGVLELPGQPGAPELPGQPVATVALEISVQSVVTTS 662
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 8.4
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 23/114 (20%)
Query: 42 GETAVPGAPEALRALRARGKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGT 101
GE AV +P +A G+ G + N + AA + + P A E
Sbjct: 20 GEAAVASSPS-----KANGQENGHVKVNGDASPAAAESGAKEELQANGSAPAADKEEPAA 74
Query: 102 AYCTALYLRQRLAGAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGD 155
A +GA +P A G PA AA EA G P++ E P +
Sbjct: 75 AG----------SGAASPSAAEKGEPAAAAAPEA--------GASPVEKEAPAE 110
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 28.5 bits (62), Expect = 8.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 115 GAPAPKAYVLGSPA---LAAELEAVGVASVGVGPEPLQGEGPG 154
G+P P A +PA AA A A+ GP P GPG
Sbjct: 24 GSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPG 66
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 28.5 bits (62), Expect = 8.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 36 DGVLWRGETAVPGAPEALRALRARGKRLGFITNNSSKT 73
+G +W G P P+ L++ G+ F+T S K+
Sbjct: 684 EGAIWEGSGLQPKCPDTLQSREGLGRMESFLTLESEKS 721
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 28.5 bits (62), Expect = 8.4
Identities = 44/161 (27%), Positives = 58/161 (36%), Gaps = 22/161 (13%)
Query: 1 MAAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAV----PGAPEALRAL 56
MAA EA + V +A+ + + L C+ V W AV PGA L
Sbjct: 1 MAAVEAAAEPVTVVAAVGPKAKDEEEEEEEPLPPCEAVRWAPVGAVAEARPGATAFLEEA 60
Query: 57 RAR--GKRLGFITNNSSKTRAAYAEKLRRLGFGGPAGPGASLEVFGTAYCTALYLRQRLA 114
A G G ++ +T + RRL A L + LRQ +
Sbjct: 61 TAEEPGAAPGSPPDSPGRTLRRLRAERRRL-------DSALLALSSHFAQVQFRLRQVVR 113
Query: 115 GAPAPKAYVLGSPALAAELEAVGVASVGVGPEPLQGEGPGD 155
GAPA + +L ELE P L EGPGD
Sbjct: 114 GAPAEQQRLL------RELEDFAFRGC---PHVLGYEGPGD 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,838,539
Number of Sequences: 37866
Number of extensions: 630435
Number of successful extensions: 1606
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 36
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.