Guide to the Human Genome
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Name: HDHD2 Sequence: fasta or formatted (259aa) NCBI GI: 14149777
Description:

haloacid dehalogenase-like hydrolase domain containing 2

Referenced in:

Additional Enzymes and Related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         27           2
 C cysteine            1.5          4           1
 D aspartate           7.3         19           2
 E glutamate           6.9         18           2
 F phenylalanine       3.9         10           2
 G glycine             6.9         18           2
 H histidine           2.7          7           1
 I isoleucine          5.0         13           2
 K lysine              6.2         16           1
 L leucine            12.7         33           3
 M methionine          1.9          5           1
 N asparagine          1.5          4           1
 P proline             5.4         14           3
 Q glutamine           3.1          8           1
 R arginine            6.2         16           1
 S serine              3.5          9           1
 T threonine           5.8         15           2
 V valine              6.6         17           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   haloacid dehalogenase-like hydrolase domain containi... 
LHPP                  0.346   phospholysine phosphohistidine inorganic pyrophospha...
PDXP                  0.102   pyridoxal phosphatase 
PGP                   0.096   phosphoglycolate phosphatase 
MYH4                  0.018   myosin, heavy polypeptide 4, skeletal muscle 
HDHD3                 0.018   haloacid dehalogenase-like hydrolase domain containi...
MYH8                  0.012   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH1                  0.012   myosin, heavy chain 1, skeletal muscle, adult [Homo...
SNX32                 0.012   sorting nexin 6B 
PODXL                 0.010   podocalyxin-like isoform 2 precursor 
PODXL                 0.010   podocalyxin-like isoform 1 precursor 
MYH6                  0.010   myosin heavy chain 6 
MYH13                 0.010   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ZYG11B                0.010   zyg-11 homolog B 
CALCOCO1              0.010   coiled-coil transcriptional coactivator isoform 2 [...
CALCOCO1              0.010   coiled-coil transcriptional coactivator isoform 1 [H...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.010   myosin, heavy chain 2, skeletal muscle, adult [Homo...
NANP                  0.008   N-acetylneuraminic acid phosphatase 
EPHX2                 0.008   epoxide hydrolase 2, cytoplasmic 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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