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Search of human proteins with 4557553
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557553 emerin [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557553 emerin [Homo sapiens] 515 e-146
gi|73760401 thymopoietin isoform gamma [Homo sapiens] 62 4e-10
gi|73760405 thymopoietin isoform beta [Homo sapiens] 43 2e-04
gi|4507555 thymopoietin isoform alpha [Homo sapiens] 43 2e-04
gi|7706607 LEM domain containing 3 [Homo sapiens] 37 0.017
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 36 0.028
gi|56676324 LEM domain containing 1 [Homo sapiens] 35 0.082
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 34 0.14
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 32 0.53
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 32 0.53
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 32 0.53
gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Ho... 32 0.70
gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 32 0.70
gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 32 0.70
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.70
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 31 0.91
gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapi... 31 0.91
gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapi... 31 0.91
gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo ... 31 1.2
gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo s... 31 1.2
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 30 1.6
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 30 1.6
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 30 1.6
gi|124378039 SEC16 homolog A [Homo sapiens] 30 1.6
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 30 1.6
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 30 2.0
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 30 2.0
gi|40538736 RAN binding protein 10 [Homo sapiens] 30 2.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 2.0
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 30 2.0
>gi|4557553 emerin [Homo sapiens]
Length = 254
Score = 515 bits (1327), Expect = e-146
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS 60
MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS
Sbjct: 1 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS 60
Query: 61 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS 120
FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS
Sbjct: 61 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS 120
Query: 121 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS 180
VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS
Sbjct: 121 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS 180
Query: 181 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF 240
YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF
Sbjct: 181 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF 240
Query: 241 FIYHFMQAEEGNPF 254
FIYHFMQAEEGNPF
Sbjct: 241 FIYHFMQAEEGNPF 254
>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
Length = 345
Score = 62.4 bits (150), Expect = 4e-10
Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 35/252 (13%)
Query: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63
+L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS +
Sbjct: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
Query: 64 LNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQSVTS 123
N + D+D Y D E+S + E P + ++ +
Sbjct: 174 QNGS-NDSDRY-----------------SDNEEDSKIELKL----EKREPLKGRAKTPVT 211
Query: 124 FPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPV-SASRSSLDLSYY 182
H+QV + E + P S + RP+ A+ L+LS +
Sbjct: 212 LKQRRVEHNQVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDF 271
Query: 183 PTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFI 242
S SS ++ ++ E G R +P+W ++LLF+V + LF +
Sbjct: 272 RMEES----FSSKYVPKYVPLADVKSEKTKKG------RSIPVWIKILLFVVVAVFLFLV 321
Query: 243 YHFMQAEEGNPF 254
Y M+ + NPF
Sbjct: 322 YQAMETNQVNPF 333
>gi|73760405 thymopoietin isoform beta [Homo sapiens]
Length = 454
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63
+L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS +
Sbjct: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
Query: 64 LNSTRGDADMY 74
N + D+D Y
Sbjct: 174 QNGS-NDSDRY 183
Score = 38.9 bits (89), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 221 RQVPLWGQLLLFLVFVIVLFFIYHFMQAEEGNPF 254
R +P+W ++LLF+V + LF +Y M+ + NPF
Sbjct: 409 RSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPF 442
>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
Length = 694
Score = 43.1 bits (100), Expect = 2e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63
+L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS +
Sbjct: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
Query: 64 LNSTRGDADMY 74
N + D+D Y
Sbjct: 174 QNGS-NDSDRY 183
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 37.0 bits (84), Expect = 0.017
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 7 LSDTELTTLLRRYNIPHGPVVGSTRRLY---EKKIFEYETQRRR 47
LSD EL + LRRY + GPV STR +Y KK+ E E Q+ R
Sbjct: 12 LSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQHR 55
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 36.2 bits (82), Expect = 0.028
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 106 GEPESAGPSRAVRQSVTS-----FPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSA 160
G+ +S G R+ V + P+ + +VH SSS+ + R S+
Sbjct: 2090 GDQKSGGKCETDRRMVAARTEPLTPNPASKKPRVHKRGSESSSDSDSDSERSSCSSRSSS 2149
Query: 161 YQS---ITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
S +H R S+S SS S +SSS+S SSSSSSSS
Sbjct: 2150 SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSS 2191
>gi|56676324 LEM domain containing 1 [Homo sapiens]
Length = 108
Score = 34.7 bits (78), Expect = 0.082
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 7 LSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYSFSDLNS 66
LSD +L L + GP++ STR+LYEKK+ + P + D +
Sbjct: 7 LSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQLLVSPPCAPPVMNGPRELDGAQDSDD 66
Query: 67 TRGDADMYDLPKKEDAL 83
+ G + P+ L
Sbjct: 67 SEGGLQEHQAPESHMGL 83
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 33.9 bits (76), Expect = 0.14
Identities = 30/78 (38%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 144 EEECKDRERPM----YGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
E E K+ E+P GRDS QS PVS S+S L TS S + SS S
Sbjct: 1159 EMEMKNIEKPSGTDPAGRDSPIQSCQDLTPVSHSQSETQLGSKSTSHSGQDTEEAGSSMS 1218
Query: 200 WLTRRAIRPENRAPGAGL 217
L R RAP A L
Sbjct: 1219 TLERSL--AARRAPRAKL 1234
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 143 SEEECKDRERPMYGR--DSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSW 200
SE +D + Y R D YQ YRPVS S S+ SSS S MSSS +SS
Sbjct: 659 SETSREDEYKQKYSRTYDETYQ---RYRPVSTSSST------TPSSSLSTMSSSLYASSQ 709
Query: 201 LTR 203
L R
Sbjct: 710 LNR 712
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 143 SEEECKDRERPMYGR--DSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSW 200
SE +D + Y R D YQ YRPVS S S+ SSS S MSSS +SS
Sbjct: 746 SETSREDEYKQKYSRTYDETYQ---RYRPVSTSSST------TPSSSLSTMSSSLYASSQ 796
Query: 201 LTR 203
L R
Sbjct: 797 LNR 799
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 32.0 bits (71), Expect = 0.53
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 143 SEEECKDRERPMYGR--DSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSW 200
SE +D + Y R D YQ YRPVS S S+ SSS S MSSS +SS
Sbjct: 746 SETSREDEYKQKYSRTYDETYQ---RYRPVSTSSST------TPSSSLSTMSSSLYASSQ 796
Query: 201 LTR 203
L R
Sbjct: 797 LNR 799
>gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Homo
sapiens]
Length = 358
Score = 31.6 bits (70), Expect = 0.70
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 50 PPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGE-- 107
PPS + + S RG + + +++D + K + EE T G+
Sbjct: 170 PPSLAVVETEWRKRKASRRGAEEEEE--EEDDDSGEEMKALRERQREELSKVTSNLGKMI 227
Query: 108 -PESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRD--SAYQSI 164
E S +R+ S PD FH +H SSS P YGR S QS
Sbjct: 228 LKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSS--------LPAYGRTTLSRLQS- 278
Query: 165 THYRPVSASRSSLDLSYYP 183
T + P + S L YP
Sbjct: 279 TEFSPSGSETGSPGLQIYP 297
>gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 31.6 bits (70), Expect = 0.70
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 50 PPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGE-- 107
PPS + + S RG + + +++D + K + EE T G+
Sbjct: 195 PPSLAVVETEWRKRKASRRGAEEEEE--EEDDDSGEEMKALRERQREELSKVTSNLGKMI 252
Query: 108 -PESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRD--SAYQSI 164
E S +R+ S PD FH +H SSS P YGR S QS
Sbjct: 253 LKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSS--------LPAYGRTTLSRLQS- 303
Query: 165 THYRPVSASRSSLDLSYYP 183
T + P + S L YP
Sbjct: 304 TEFSPSGSETGSPGLQIYP 322
>gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 31.6 bits (70), Expect = 0.70
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 16/139 (11%)
Query: 50 PPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGE-- 107
PPS + + S RG + + +++D + K + EE T G+
Sbjct: 195 PPSLAVVETEWRKRKASRRGAEEEEE--EEDDDSGEEMKALRERQREELSKVTSNLGKMI 252
Query: 108 -PESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRD--SAYQSI 164
E S +R+ S PD FH +H SSS P YGR S QS
Sbjct: 253 LKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSS--------LPAYGRTTLSRLQS- 303
Query: 165 THYRPVSASRSSLDLSYYP 183
T + P + S L YP
Sbjct: 304 TEFSPSGSETGSPGLQIYP 322
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.6 bits (70), Expect = 0.70
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 156 GRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
GR+ + S P S+S SS S +SSS+S SSSSSSSS
Sbjct: 2599 GRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642
Score = 28.1 bits (61), Expect = 7.7
Identities = 25/85 (29%), Positives = 33/85 (38%)
Query: 141 SSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSW 200
SSS S+ S + S+S SS S +SSS+S SSSSSS++
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTD 2674
Query: 201 LTRRAIRPENRAPGAGLGQDRQVPL 225
+ AP G Q L
Sbjct: 2675 EDSSCSSDDEAAPAPTAGPSAQAAL 2699
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 31.2 bits (69), Expect = 0.91
Identities = 35/151 (23%), Positives = 59/151 (39%)
Query: 49 SPPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEP 108
S S S+ SS S S +++ D+D D + + S N +S ++ +
Sbjct: 558 SNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSS 617
Query: 109 ESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYR 168
+S+ +S + D+D+ + SS + D DS+ S +
Sbjct: 618 DSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDS 677
Query: 169 PVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
S+ S+ S + SS S SS SS SS
Sbjct: 678 SSSSDSSNSSDSSDSSDSSNSSESSDSSDSS 708
Score = 29.6 bits (65), Expect = 2.7
Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 14/175 (8%)
Query: 39 FEYETQRRRLSPPSSSAASS-----YSFSDLNST-RGDADMYDLPKKEDALLYQSKGYND 92
++++ + + P+SS S+ S SD NS+ RGDA K++ SKG D
Sbjct: 453 YDFDDKSMQGDDPNSSDESNGNDDANSESDNNSSSRGDASYNSDESKDNGNGSDSKGAED 512
Query: 93 DYYEESYFTTRT-------YGEPESAGPSRAVRQSVTSFPD-ADAFHHQVHDDDLLSSSE 144
D + + T + G ++ +S +S D +D+ + D S S
Sbjct: 513 DDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSS 572
Query: 145 EECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
+ + DS+ S + S S S D S SS +S S S S SS
Sbjct: 573 DSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSS 627
Score = 28.1 bits (61), Expect = 7.7
Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 4/147 (2%)
Query: 53 SSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAG 112
S ++ S + SD + + +D D D+ SK +D +S + +S+
Sbjct: 593 SDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSD 652
Query: 113 PSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSA 172
S S S +++ D SSS + + DS+ S + S+
Sbjct: 653 NS----DSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSS 708
Query: 173 SRSSLDLSYYPTSSSTSFMSSSSSSSS 199
S D S S+S+ SS+SS SS
Sbjct: 709 DSDSSDSSDSSNSNSSDSDSSNSSDSS 735
>gi|71834863 Rho GTPase activating protein 5 isoform a [Homo sapiens]
Length = 1502
Score = 31.2 bits (69), Expect = 0.91
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 84 LYQSKGYNDDYY-----------------------EESYFTTRTYGEPESAGPSRAVRQS 120
+++ KGY+D+ Y EE+ F+ RT PS+ +S
Sbjct: 1098 IFKQKGYSDEIYVVPDDSQNRIKIRNSFVNNTQGDEENGFSDRTSKSHGERRPSKYKYKS 1157
Query: 121 VTSFPDADAFHHQVH----DDDLLSSSEEECKDRER 152
T F A +++ + H DD+ ++S+ + K R R
Sbjct: 1158 KTLFSKAKSYYRRTHSDASDDEAFTTSKTKRKGRHR 1193
>gi|71834861 Rho GTPase activating protein 5 isoform b [Homo sapiens]
Length = 1501
Score = 31.2 bits (69), Expect = 0.91
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 84 LYQSKGYNDDYY-----------------------EESYFTTRTYGEPESAGPSRAVRQS 120
+++ KGY+D+ Y EE+ F+ RT PS+ +S
Sbjct: 1098 IFKQKGYSDEIYVVPDDSQNRIKIRNSFVNNTQGDEENGFSDRTSKSHGERRPSKYKYKS 1157
Query: 121 VTSFPDADAFHHQVH----DDDLLSSSEEECKDRER 152
T F A +++ + H DD+ ++S+ + K R R
Sbjct: 1158 KTLFSKAKSYYRRTHSDASDDEAFTTSKTKRKGRHR 1193
>gi|224586855 sorbin and SH3 domain containing 2 isoform 8 [Homo
sapiens]
Length = 492
Score = 30.8 bits (68), Expect = 1.2
Identities = 46/172 (26%), Positives = 61/172 (35%), Gaps = 38/172 (22%)
Query: 70 DADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRT-----------------YGEPESAG 112
D DMY+ P +A LY N Y +S+ +T + + S
Sbjct: 33 DTDMYNTPYTYNAGLY-----NPPYSAQSHPAAKTQTYRPLSKSHSDNSPNAFKDASSPV 87
Query: 113 PSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMY------GRDSAYQSITH 166
P V V D + HD D + K R P G+ S Q H
Sbjct: 88 PPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQ---H 144
Query: 167 YRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLG 218
RP S +SS+D S MSS+S +S + RR P P GLG
Sbjct: 145 ERPASLYQSSIDRSLERP------MSSASMASDFRKRRKSEPA-VGPPRGLG 189
>gi|10947118 sorbin and SH3 domain containing 2 isoform 2 [Homo
sapiens]
Length = 1100
Score = 30.8 bits (68), Expect = 1.2
Identities = 46/172 (26%), Positives = 61/172 (35%), Gaps = 38/172 (22%)
Query: 70 DADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRT-----------------YGEPESAG 112
D DMY+ P +A LY N Y +S+ +T + + S
Sbjct: 114 DTDMYNTPYTYNAGLY-----NPPYSAQSHPAAKTQTYRPLSKSHSDNSPNAFKDASSPV 168
Query: 113 PSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMY------GRDSAYQSITH 166
P V V D + HD D + K R P G+ S Q H
Sbjct: 169 PPPHVPPPVPPLRPRDRSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQ---H 225
Query: 167 YRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLG 218
RP S +SS+D S MSS+S +S + RR P P GLG
Sbjct: 226 ERPASLYQSSIDRSLERP------MSSASMASDFRKRRKSEPA-VGPPRGLG 270
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 156 GRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
G SA + P++AS S S +SSS+S SSSSSSSS
Sbjct: 120 GGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 156 GRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
G SA + P++AS S S +SSS+S SSSSSSSS
Sbjct: 120 GGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 156 GRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
G SA + P++AS S S +SSS+S SSSSSSSS
Sbjct: 120 GGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 30.4 bits (67), Expect = 1.6
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 18 RYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYSFSDLN--STRGDADMYD 75
+Y++P+ P G+ Y+ YE + R +S+ A +Y + + S+R
Sbjct: 1172 QYSLPYPPEPGAASLYYQDVYSLYEPRYRPYDGAASAYAQNYRYPEPERPSSRASHSSER 1231
Query: 76 LPKKE--DALLYQSK---GYNDDYYEESYFTTRTYGEP 108
P ++ Y SK DYY Y + YG+P
Sbjct: 1232 PPPRQGYPEGYYSSKSGWSSQSDYYASYYSSQYDYGDP 1269
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 169 PVSASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPG 214
P+S+S SSL P+S+++S ++SS SS LT+R + +PG
Sbjct: 405 PLSSSGSSLS----PSSTASSSLTSSPCSSPVLTKRLLGSSASSPG 446
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 107 EPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITH 166
E S +RQ +T F + F + D + S +R GR +
Sbjct: 396 ETTSVAIQTMLRQIMTGFGELSYFMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGG--- 452
Query: 167 YRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
S+S SS S +SSS+S SSS SSSS
Sbjct: 453 ----SSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 107 EPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITH 166
E S +RQ +T F + F + D + S +R GR +
Sbjct: 396 ETTSVAIQTMLRQIMTGFGELSYFMYSDSDSEPTGSVSNRNMERAESRSGRGGSGGG--- 452
Query: 167 YRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
S+S SS S +SSS+S SSS SSSS
Sbjct: 453 ----SSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
>gi|40538736 RAN binding protein 10 [Homo sapiens]
Length = 620
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 170 VSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
V++++S + S YP SS+S SSSSSSSS
Sbjct: 393 VASTKSKQNHSKYPAPSSSSSSSSSSSSSS 422
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 171 SASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPG 214
S+S SS S +SSS+S SSSSSSSS + + P PG
Sbjct: 2612 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655
Score = 28.5 bits (62), Expect = 5.9
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 157 RDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
R S+ S + S+S SS S +SSS+S SSSSSSSS
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 28.5 bits (62), Expect = 5.9
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 171 SASRSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGA 215
S+S SS S +SSS+S SSSSSSSS + + P P A
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
Score = 28.1 bits (61), Expect = 7.7
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 168 RPVSASRSSLDLSYYPTSSSTSFMSSSSSSSS 199
+P RSS S +SSS+S SSSSSSSS
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS 2556
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 30.0 bits (66), Expect = 2.0
Identities = 53/191 (27%), Positives = 71/191 (37%), Gaps = 25/191 (13%)
Query: 58 SYSFSDLNSTRGDA--DMYDLPKKEDALLYQS-------------KGYNDDYYEESYFTT 102
S + S LNS A YD + + YQS G+ +++ T
Sbjct: 599 SLTSSSLNSASPVAMSSSYDQSSVHNRIPYQSPVSSSESAPGTIMNGHGGGRSQQTLDTP 658
Query: 103 RTYGEPESAGPSRAVRQSVTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQ 162
+T G P SA PS + S TS Q H DL SS + SA+
Sbjct: 659 KTTGPP-SALPSVSSLPSTTSCTALLPSTSQ-HTGDLTSSPLSQLSSSLSSHQSSLSAHA 716
Query: 163 SI------THYRPVSAS--RSSLDLSYYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPG 214
++ TH SAS +SS S TS S+S S +S SSS T ++
Sbjct: 717 ALSSSTSHTHASVESASSHQSSATFSTAATSVSSSASSGASLSSSMNTANSLCLGGTPAS 776
Query: 215 AGLGQDRQVPL 225
A R PL
Sbjct: 777 ASSSSSRAAPL 787
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,034,839
Number of Sequences: 37866
Number of extensions: 441455
Number of successful extensions: 2795
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2371
Number of HSP's gapped (non-prelim): 204
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.