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Search of human proteins with 4557433
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4557433 CD40 ligand [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4557433 CD40 ligand [Homo sapiens] 518 e-147
gi|14790152 tumor necrosis factor ligand superfamily, member 11 ... 52 5e-07
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 52 5e-07
gi|4507593 tumor necrosis factor (ligand) superfamily, member 10... 49 6e-06
gi|25952111 tumor necrosis factor alpha [Homo sapiens] 47 2e-05
gi|4557329 fas ligand [Homo sapiens] 44 1e-04
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens] 42 7e-04
gi|23510445 tumor necrosis factor (ligand) superfamily, member 1... 37 0.017
gi|4507605 tumor necrosis factor ligand superfamily, member 7 [H... 33 0.25
gi|25952147 tumor necrosis factor ligand superfamily, member 14 ... 33 0.33
gi|25952144 tumor necrosis factor ligand superfamily, member 14 ... 33 0.33
gi|4507597 tumor necrosis factor (ligand) superfamily, member 12... 31 0.95
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 29 3.6
gi|154813197 talpid3 protein [Homo sapiens] 29 3.6
gi|238908495 similar to pleckstrin homology domain protein (5V32... 29 4.7
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 29 4.7
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 29 4.7
gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo ... 29 4.7
gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo ... 29 4.7
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 28 6.2
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 28 6.2
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 28 6.2
gi|6806893 lymphotoxin alpha precursor [Homo sapiens] 28 8.1
gi|229092381 lymphotoxin alpha precursor [Homo sapiens] 28 8.1
gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens] 28 8.1
gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens] 28 8.1
gi|229577396 zinc finger protein 583 [Homo sapiens] 28 8.1
gi|229577249 zinc finger protein 583 [Homo sapiens] 28 8.1
gi|229577247 zinc finger protein 583 [Homo sapiens] 28 8.1
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 28 8.1
>gi|4557433 CD40 ligand [Homo sapiens]
Length = 261
Score = 518 bits (1335), Expect = e-147
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLH 60
MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLH
Sbjct: 1 MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLH 60
Query: 61 EDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNP 120
EDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNP
Sbjct: 61 EDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNP 120
Query: 121 QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSN 180
QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSN
Sbjct: 121 QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSN 180
Query: 181 REASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN 240
REASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN
Sbjct: 181 REASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN 240
Query: 241 VTDPSQVSHGTGFTSFGLLKL 261
VTDPSQVSHGTGFTSFGLLKL
Sbjct: 241 VTDPSQVSHGTGFTSFGLLKL 261
>gi|14790152 tumor necrosis factor ligand superfamily, member 11
isoform 2 [Homo sapiens]
Length = 244
Score = 52.0 bits (123), Expect = 5e-07
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 59 LHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIM--------LNKEETKKENS 110
LHE+ F T + + L +C IK F+G V+ + + E+ + S
Sbjct: 20 LHENADFQDTT--LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGS 77
Query: 111 FE--MQKGDQNPQIAAHVISEAS-----SKTTSVLQWA-EKGYYTMSNNLVTLENGKQLT 162
+ ++ Q AH+ A+ S S+ W ++G+ +SN +T NGK L
Sbjct: 78 WLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN--MTFSNGK-LI 134
Query: 163 VKRQGLYYIYAQVTFCSNREASSQAP-------FIASLCLKSPGRFERILLRAANTH--S 213
V + G YY+YA + F + + A ++ +K P L++ +T S
Sbjct: 135 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPS--SHTLMKGGSTKYWS 192
Query: 214 SAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
SI++GG F+L+ G + + V++PS + T FG K+
Sbjct: 193 GNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 240
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 52.0 bits (123), Expect = 5e-07
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 59 LHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIM--------LNKEETKKENS 110
LHE+ F T + + L +C IK F+G V+ + + E+ + S
Sbjct: 93 LHENADFQDTT--LESQDTKLIPDSCRRIKQAFQGAVQKELQHIVGSQHIRAEKAMVDGS 150
Query: 111 FE--MQKGDQNPQIAAHVISEAS-----SKTTSVLQWA-EKGYYTMSNNLVTLENGKQLT 162
+ ++ Q AH+ A+ S S+ W ++G+ +SN +T NGK L
Sbjct: 151 WLDLAKRSKLEAQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISN--MTFSNGK-LI 207
Query: 163 VKRQGLYYIYAQVTFCSNREASSQAP-------FIASLCLKSPGRFERILLRAANTH--S 213
V + G YY+YA + F + + A ++ +K P L++ +T S
Sbjct: 208 VNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPS--SHTLMKGGSTKYWS 265
Query: 214 SAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
SI++GG F+L+ G + + V++PS + T FG K+
Sbjct: 266 GNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKV 313
>gi|4507593 tumor necrosis factor (ligand) superfamily, member 10
[Homo sapiens]
Length = 281
Score = 48.5 bits (114), Expect = 6e-06
Identities = 62/262 (23%), Positives = 115/262 (43%), Gaps = 34/262 (12%)
Query: 27 LLTVF-LITQMIGSALFAVYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLN-C 84
L+ +F ++ Q + A+ VY L +++D+ + F+K S+ + C
Sbjct: 18 LIVIFTVLLQSLCVAVTYVYFTNELKQMQDKYSKSGIACFLKEDDSYWDPNDEESMNSPC 77
Query: 85 EEIKSQFEGFVKDIMLN-KEET-----KKENSFEMQKGDQNPQ-IAAHV---------IS 128
++K Q V+ ++L EET +K+ + ++ PQ +AAH+ +S
Sbjct: 78 WQVKWQLRQLVRKMILRTSEETISTVQEKQQNISPLVRERGPQRVAAHITGTRGRSNTLS 137
Query: 129 EASSKTTSVL-----QW--AEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNR 181
+SK L W + G+ +SN + L NG +L + +G YYIY+Q F
Sbjct: 138 SPNSKNEKALGRKINSWESSRSGHSFLSN--LHLRNG-ELVIHEKGFYYIYSQTYFRFQE 194
Query: 182 E----ASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPC--GQQSIHLGGVFELQPGA 235
E + + + + +L+++A +K G SI+ GG+FEL+
Sbjct: 195 EIKENTKNDKQMVQYIYKYTSYPDPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKEND 254
Query: 236 SVFVNVTDPSQVSHGTGFTSFG 257
+FV+VT+ + + FG
Sbjct: 255 RIFVSVTNEHLIDMDHEASFFG 276
>gi|25952111 tumor necrosis factor alpha [Homo sapiens]
Length = 233
Score = 46.6 bits (109), Expect = 2e-05
Identities = 54/197 (27%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 81 LLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAAHVISEASSKTTSVLQW 140
LL+ I Q E F +D+ L + S D+ AHV+ A+ + LQW
Sbjct: 50 LLHFGVIGPQREEFPRDLSLISPLAQAVRSSSRTPSDKP---VAHVV--ANPQAEGQLQW 104
Query: 141 AEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTF---------------CSNREASS 185
+ + N V L + QL V +GLY IY+QV F S S
Sbjct: 105 LNRRANALLANGVELRDN-QLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSY 163
Query: 186 QAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVNVTDPS 245
Q +KSP + R + AKP + I+LGGVF+L+ G + + P
Sbjct: 164 QTKVNLLSAIKSPCQ------RETPEGAEAKP-WYEPIYLGGVFQLEKGDRLSAEINRPD 216
Query: 246 QVSHG-TGFTSFGLLKL 261
+ +G FG++ L
Sbjct: 217 YLDFAESGQVYFGIIAL 233
>gi|4557329 fas ligand [Homo sapiens]
Length = 281
Score = 43.9 bits (102), Expect = 1e-04
Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 109 NSFEMQKGDQNP-------QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQL 161
+S E Q G +P + AH+ +++S++ L+W + + + + + G L
Sbjct: 125 SSLEKQIGHPSPPPEKKELRKVAHLTGKSNSRSMP-LEWEDTYGIVLLSGVKYKKGG--L 181
Query: 162 TVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQ- 220
+ GLY++Y++V F ++ + P + +++ ++ + L+ S GQ
Sbjct: 182 VINETGLYFVYSKVYF--RGQSCNNLPLSHKVYMRN-SKYPQDLVMMEGKMMSYCTTGQM 238
Query: 221 --QSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
+S +LG VF L ++VNV++ S V+ T FGL KL
Sbjct: 239 WARSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 281
>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
Length = 244
Score = 41.6 bits (96), Expect = 7e-04
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 161 LTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKS----------PGRFERILLRAAN 210
L + + GLYY+Y V + P S+ L+S PG E +L A
Sbjct: 125 LALPQDGLYYLYCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAET 184
Query: 211 THSSAKPCGQQ--------SIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFG 257
P +Q S+ GG+ +L+ G V+VN++ P V G T FG
Sbjct: 185 VTPVLDPARRQGYGPLWYTSVGFGGLVQLRRGERVYVNISHPDMVDFARGKTFFG 239
>gi|23510445 tumor necrosis factor (ligand) superfamily, member 15
[Homo sapiens]
Length = 251
Score = 37.0 bits (84), Expect = 0.017
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 138 LQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTF------CSN-REAS--SQAP 188
L W + + N + N K L + G Y+IY+QVTF CS R+A ++
Sbjct: 117 LHWEHELGLAFTKNRMNYTN-KFLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPD 175
Query: 189 FIASLCLKSPGRFERILLRAANTHSSAKPCGQ--QSIHLGGVFELQPGASVFVNVTDPSQ 246
I + K + T S + Q I+LG +F LQ G + VNV+D S
Sbjct: 176 SITVVITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMFSLQEGDKLMVNVSDISL 235
Query: 247 VSH 249
V +
Sbjct: 236 VDY 238
>gi|4507605 tumor necrosis factor ligand superfamily, member 7 [Homo
sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.25
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 160 QLTVKRQGLYYIYAQVT--FCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKP 217
QL + R G+Y ++ QVT CS+ AS P ++ + SP LLR + H
Sbjct: 95 QLRIHRDGIYMVHIQVTLAICSSTTASRHHPTTLAVGICSPASRSISLLR-LSFHQGCTI 153
Query: 218 CGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGL 258
Q+ + L G ++ N+T S T T FG+
Sbjct: 154 ASQR------LTPLARGDTLCTNLTGTLLPSRNTDETFFGV 188
>gi|25952147 tumor necrosis factor ligand superfamily, member 14
isoform 2 [Homo sapiens]
Length = 204
Score = 32.7 bits (73), Expect = 0.33
Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 112 EMQKGDQNPQIAAHVISEASSKTTS--VLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLY 169
E + + NP AAH+ SS T S L W + L + L V + G Y
Sbjct: 50 ERRSHEVNP--AAHLTGANSSLTGSGGPLLWETQLGLAFLRGLSYHDGA--LVVTKAGYY 105
Query: 170 YIYAQVTF----CSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQ----- 220
YIY++V C AS+ + + P E ++ S PCG+
Sbjct: 106 YIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELLV-------SQQSPCGRATSSS 158
Query: 221 ----QSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSF 256
S LGGV L+ G V V V D V G S+
Sbjct: 159 RVWWDSSFLGGVVHLEAGEEVVVRVLDERLVRLRDGTRSY 198
>gi|25952144 tumor necrosis factor ligand superfamily, member 14
isoform 1 precursor [Homo sapiens]
Length = 240
Score = 32.7 bits (73), Expect = 0.33
Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 26/160 (16%)
Query: 112 EMQKGDQNPQIAAHVISEASSKTTS--VLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLY 169
E + + NP AAH+ SS T S L W + L + L V + G Y
Sbjct: 86 ERRSHEVNP--AAHLTGANSSLTGSGGPLLWETQLGLAFLRGLSYHDGA--LVVTKAGYY 141
Query: 170 YIYAQVTF----CSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQ----- 220
YIY++V C AS+ + + P E ++ S PCG+
Sbjct: 142 YIYSKVQLGGVGCPLGLASTITHGLYKRTPRYPEELELLV-------SQQSPCGRATSSS 194
Query: 221 ----QSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSF 256
S LGGV L+ G V V V D V G S+
Sbjct: 195 RVWWDSSFLGGVVHLEAGEKVVVRVLDERLVRLRDGTRSY 234
>gi|4507597 tumor necrosis factor (ligand) superfamily, member 12
precursor [Homo sapiens]
Length = 249
Score = 31.2 bits (69), Expect = 0.95
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 160 QLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCG 219
+ V R GLYY+Y QV F + + + L R L + T +S+
Sbjct: 152 EFIVTRAGLYYLYCQVHFDEGKAVYLKLDLLVDGVLAL-----RCLEEFSATAASSLGPQ 206
Query: 220 QQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL 261
+ + G+ L+PG+S+ + + + T FGL ++
Sbjct: 207 LRLCQVSGLLALRPGSSLRIRTLPWAHLKAAPFLTYFGLFQV 248
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 120 PQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTF 177
P + A + S +T SV + TM+ VT NG+ +T+ QG+ +TF
Sbjct: 702 PLVNAVPVQNVSGETVSVTPVPGQTLVTMATATVTANNGQTVTIPVQGIANENGGITF 759
>gi|154813197 talpid3 protein [Homo sapiens]
Length = 1472
Score = 29.3 bits (64), Expect = 3.6
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 74 TGERSLSLLNCEEIKS------QFEGFVKDIMLNKEETKK----ENSFEMQKGDQNPQIA 123
T E++ +CEE+++ + + + D+ ++ET + S M K PQ +
Sbjct: 412 TPEKTNRFPSCEELETTKVTMQKSDDVLHDLGQKEKETNSMVQPKESLSMLKLPDLPQNS 471
Query: 124 AHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCS-NRE 182
+ + ++ T SVL+ AEK + NN LE + ++ + +Y+ + S NRE
Sbjct: 472 VKL--QTTNTTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSLINALSTNRE 529
Query: 183 ASSQ 186
S +
Sbjct: 530 MSEK 533
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 28.9 bits (63), Expect = 4.7
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 52 KIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEI----KSQFEGFVKDIMLNKEETKK 107
++ E+ + D + +T + C E+ L ++ K QFE V+++ + +E+ K+
Sbjct: 158 QLAKEKQEYLDKLMEETEELCLQREQREELERLNQVLEAEKQQFEEVVQELRMEQEQIKR 217
Query: 108 ENSFEMQ--KGDQNPQIAAHVISEASSKTTSVLQWAEKGYYTM----SNNLVTLENGKQL 161
E + KG + + ++E+ +T L +K M N+L TL N +
Sbjct: 218 ELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKTLEMLEENENHLQTLANQSEQ 277
Query: 162 TVKRQGLYYIYAQV 175
GL+ Q+
Sbjct: 278 PPPSGGLHSNLRQI 291
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 28.9 bits (63), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 218 CGQQSIHLGG---VFELQPGASVFVNVTDPSQVSHGTGFTSFGL 258
CGQ S+ +G + +L P S ++ PS SH GF FGL
Sbjct: 398 CGQGSVPMGSRNRILQLMPQLSPTPSMM-PSPNSHAAGFKGFGL 440
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 28.9 bits (63), Expect = 4.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 218 CGQQSIHLGG---VFELQPGASVFVNVTDPSQVSHGTGFTSFGL 258
CGQ S+ +G + +L P S ++ PS SH GF FGL
Sbjct: 398 CGQGSVPMGSRNRILQLMPQLSPTPSMM-PSPNSHAAGFKGFGL 440
>gi|27262628 nuclear autoantigenic sperm protein isoform 2 [Homo
sapiens]
Length = 788
Score = 28.9 bits (63), Expect = 4.7
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 36 MIGSALFAVYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFV 95
++G+AL V++ + ++ +L E+ + R E+ + +E + E
Sbjct: 105 VLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAREELREQVYDAMGEKEEAKKTE--- 161
Query: 96 KDIMLNKEETKKENSFEMQKGDQNPQIAAHVISEASSKTTSVLQW 140
D L K ET KE EM+KG + + E K L W
Sbjct: 162 -DKSLAKPETDKEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDW 205
>gi|27262634 nuclear autoantigenic sperm protein isoform 1 [Homo
sapiens]
Length = 790
Score = 28.9 bits (63), Expect = 4.7
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 36 MIGSALFAVYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFV 95
++G+AL V++ + ++ +L E+ + R E+ + +E + E
Sbjct: 107 VLGNALEGVHVEEEEGEKTEDESLVENNDNIDEEAREELREQVYDAMGEKEEAKKTE--- 163
Query: 96 KDIMLNKEETKKENSFEMQKGDQNPQIAAHVISEASSKTTSVLQW 140
D L K ET KE EM+KG + + E K L W
Sbjct: 164 -DKSLAKPETDKEQDSEMEKGGREDMDISKSAEEPQEKVDLTLDW 207
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 28.5 bits (62), Expect = 6.2
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 70 QRCNTGERSL-----SLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAA 124
QR NT +S L CEE K K++ N E K + + +K +
Sbjct: 307 QRVNTKSQSAFDLKKKNLACEESKR------KELEKNMVEDSKTLAAK-EKEVKKITDGL 359
Query: 125 HVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQ 166
H + EAS+K L A++ + +S L + E+G + T+ Q
Sbjct: 360 HALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQ 401
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 28.5 bits (62), Expect = 6.2
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 70 QRCNTGERSL-----SLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAA 124
QR NT +S L CEE K K++ N E K + + +K +
Sbjct: 307 QRVNTKSQSAFDLKKKNLACEESKR------KELEKNMVEDSKTLAAK-EKEVKKITDGL 359
Query: 125 HVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQ 166
H + EAS+K L A++ + +S L + E+G + T+ Q
Sbjct: 360 HALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQ 401
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 28.5 bits (62), Expect = 6.2
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 70 QRCNTGERSL-----SLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAA 124
QR NT +S L CEE K K++ N E K + + +K +
Sbjct: 307 QRVNTKSQSAFDLKKKNLACEESKR------KELEKNMVEDSKTLAAK-EKEVKKITDGL 359
Query: 125 HVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQ 166
H + EAS+K L A++ + +S L + E+G + T+ Q
Sbjct: 360 HALQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQ 401
>gi|6806893 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 123 AAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTF 177
AAH+I + S + + L W + +L N L V G+Y++Y+QV F
Sbjct: 64 AAHLIGDPSKQNS--LLWRANTDRAFLQDGFSLSNNS-LLVPTSGIYFVYSQVVF 115
>gi|229092381 lymphotoxin alpha precursor [Homo sapiens]
Length = 205
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 123 AAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTF 177
AAH+I + S + + L W + +L N L V G+Y++Y+QV F
Sbjct: 64 AAHLIGDPSKQNS--LLWRANTDRAFLQDGFSLSNNS-LLVPTSGIYFVYSQVVF 115
>gi|51477723 testis expressed sequence 11 isoform 2 [Homo sapiens]
Length = 925
Score = 28.1 bits (61), Expect = 8.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 104 ETKKENSFE--------------MQKGDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMS 149
ET+K N +E M K P++ A V+ + T+ L W + YY +
Sbjct: 216 ETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKVLRLLA---TNYLDWDDTKYYDKA 272
Query: 150 NNLVTLENGKQLT 162
N V L N + L+
Sbjct: 273 LNAVNLANKEHLS 285
>gi|51477721 testis expressed sequence 11 isoform 1 [Homo sapiens]
Length = 940
Score = 28.1 bits (61), Expect = 8.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 17/73 (23%)
Query: 104 ETKKENSFE--------------MQKGDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMS 149
ET+K N +E M K P++ A V+ + T+ L W + YY +
Sbjct: 231 ETQKNNKYEESSFWLSQSYDIGKMDKKSTGPEMLAKVLRLLA---TNYLDWDDTKYYDKA 287
Query: 150 NNLVTLENGKQLT 162
N V L N + L+
Sbjct: 288 LNAVNLANKEHLS 300
>gi|229577396 zinc finger protein 583 [Homo sapiens]
Length = 569
Score = 28.1 bits (61), Expect = 8.1
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 44 VYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKE 103
VY+ ++L K D + + QR +TGE+ + + C + SQ + ++
Sbjct: 205 VYVEKKLLKCNDCEKVFNQSSSLTLHQRIHTGEKPYACVECGKTFSQSANLAQHKRIHTG 264
Query: 104 ETKKENSFEMQKGDQNPQIAAH 125
E E + QN +A H
Sbjct: 265 EKPYECKECRKAFSQNAHLAQH 286
>gi|229577249 zinc finger protein 583 [Homo sapiens]
Length = 569
Score = 28.1 bits (61), Expect = 8.1
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 44 VYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKE 103
VY+ ++L K D + + QR +TGE+ + + C + SQ + ++
Sbjct: 205 VYVEKKLLKCNDCEKVFNQSSSLTLHQRIHTGEKPYACVECGKTFSQSANLAQHKRIHTG 264
Query: 104 ETKKENSFEMQKGDQNPQIAAH 125
E E + QN +A H
Sbjct: 265 EKPYECKECRKAFSQNAHLAQH 286
>gi|229577247 zinc finger protein 583 [Homo sapiens]
Length = 569
Score = 28.1 bits (61), Expect = 8.1
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 44 VYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKE 103
VY+ ++L K D + + QR +TGE+ + + C + SQ + ++
Sbjct: 205 VYVEKKLLKCNDCEKVFNQSSSLTLHQRIHTGEKPYACVECGKTFSQSANLAQHKRIHTG 264
Query: 104 ETKKENSFEMQKGDQNPQIAAH 125
E E + QN +A H
Sbjct: 265 EKPYECKECRKAFSQNAHLAQH 286
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 28.1 bits (61), Expect = 8.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 96 KDIMLNKEETKKENSFEMQKGDQNPQIAAHVISE 129
+++ L E K EN + + ++NP+I+AH++ E
Sbjct: 713 EELSLKDELEKNENLNDDKLDEENPKISAHILKE 746
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,952,035
Number of Sequences: 37866
Number of extensions: 349005
Number of successful extensions: 1120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 38
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.