Guide to the Human Genome
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Name: CD70 Sequence: fasta or formatted (193aa) NCBI GI: 4507605
Description:

tumor necrosis factor ligand superfamily, member 7

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         13           2
 C cysteine            4.1          8           1
 D aspartate           3.1          6           1
 E glutamate           3.1          6           2
 F phenylalanine       2.6          5           2
 G glycine             8.8         17           2
 H histidine           3.6          7           2
 I isoleucine          4.7          9           1
 K lysine              0.5          1           1
 L leucine            13.5         26           2
 M methionine          1.0          2           1
 N asparagine          1.6          3           1
 P proline             6.7         13           1
 Q glutamine           7.3         14           3
 R arginine            8.3         16           3
 S serine              7.3         14           2
 T threonine           7.3         14           2
 V valine              6.7         13           2
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor ligand superfamily, member 7 [H... 
CD40LG                0.021   CD40 ligand 
C12orf72              0.016   hypothetical protein LOC254013 
C12orf72              0.016   hypothetical protein LOC254013 
C12orf72              0.016   hypothetical protein LOC254013 
SPSB1                 0.013   splA/ryanodine receptor domain and SOCS box containi...
GABRR3                0.011   gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...
TMEM52                0.008   transmembrane protein 52 
DACT2                 0.008   dapper, antagonist of beta-catenin, homolog 2 [Homo...
SPSB4                 0.008   splA/ryanodine receptor domain and SOCS box containi...
TK1                   0.008   thymidine kinase 1 
ALS2CL                0.008   ALS2 C-terminal like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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