Guide to the Human Genome
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Name: TEX11 Sequence: fasta or formatted (940aa) NCBI GI: 51477721
Description:

testis expressed sequence 11 isoform 1

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [925aa] testis expressed sequence 11 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         77           2
 C cysteine            2.2         21           2
 D aspartate           4.8         45           2
 E glutamate           9.6         90           2
 F phenylalanine       4.3         40           2
 G glycine             2.9         27           3
 H histidine           2.4         23           2
 I isoleucine          5.1         48           2
 K lysine              6.2         58           3
 L leucine            13.2        124           4
 M methionine          3.9         37           2
 N asparagine          5.0         47           2
 P proline             2.4         23           1
 Q glutamine           4.7         44           2
 R arginine            3.7         35           1
 S serine              7.8         73           2
 T threonine           4.3         40           2
 V valine              4.6         43           2
 W tryptophan          1.8         17           1
 Y tyrosine            3.0         28           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis expressed sequence 11 isoform 1 
TEX11                 0.972   testis expressed sequence 11 isoform 2 
ZMAT1                 0.010   zinc finger, matrin type 1 isoform 1 
SYT14                 0.010   synaptotagmin XIV isoform 2 
SYT14                 0.010   synaptotagmin XIV isoform 1 
FAM76A                0.009   hypothetical protein LOC199870 isoform 2 
FAM76A                0.009   hypothetical protein LOC199870 isoform 1 
IL12RB1               0.009   interleukin 12 receptor, beta 1 isoform 2 precursor ...
ADRA1A                0.009   alpha-1A-adrenergic receptor isoform 2 
BCAS4                 0.009   breast carcinoma amplified sequence 4 isoform a [Hom...
LOC100293423          0.008   PREDICTED: hypothetical protein 
LOC100290837          0.008   PREDICTED: hypothetical protein XP_002347267 
LOC100289388          0.008   PREDICTED: hypothetical protein XP_002343124 
NEK4                  0.008   NIMA-related kinase 4 
RPGRIP1L              0.008   RPGRIP1-like isoform a 
C20orf30              0.008   hypothetical protein LOC29058 isoform 1 
KCNRG                 0.006   potassium channel regulator isoform 2 
LVRN                  0.006   laeverin 
SORBS1                0.006   sorbin and SH3 domain containing 1 isoform 4 
C11orf80              0.006   hypothetical protein LOC79703 
LOC285501             0.006   hypothetical protein LOC285501 
MAP4K1                0.005   mitogen-activated protein kinase kinase kinase kinase...
PCNT                  0.005   pericentrin 
NOS3                  0.005   nitric oxide synthase 3 isoform 4 
CEP110                0.005   centrosomal protein 110kDa 
UNC45A                0.004   smooth muscle cell associated protein-1 isoform 3 [H...
MYL10                 0.004   myosin, light chain 10, regulatory 
IFT20                 0.004   intraflagellar transport protein IFT20 
KTN1                  0.004   kinectin 1 isoform a 
KTN1                  0.004   kinectin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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