Guide to the Human Genome
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Name: FAM3C Sequence: fasta or formatted (227aa) NCBI GI: 7661714
Description:

family with sequence similarity 3, member C precursor

Not currently referenced in the text

Other entries for this name:
alt mRNA {227aa} family with sequence similarity 3, member C precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         22           2
 C cysteine            2.2          5           1
 D aspartate           6.2         14           2
 E glutamate           4.8         11           1
 F phenylalanine       5.3         12           1
 G glycine             9.7         22           2
 H histidine           0.9          2           1
 I isoleucine          5.7         13           1
 K lysine              8.8         20           1
 L leucine             7.0         16           2
 M methionine          3.1          7           1
 N asparagine          5.7         13           2
 P proline             3.5          8           2
 Q glutamine           2.2          5           1
 R arginine            3.5          8           2
 S serine              4.4         10           1
 T threonine           5.3         12           1
 V valine              8.4         19           2
 W tryptophan          1.3          3           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 3, member C precursor... 
FAM3C                 1.000   family with sequence similarity 3, member C precurso...
FAM3A                 0.500   family 3, member A protein 
FAM3D                 0.491   family with sequence similarity 3, member D 
FAM3B                 0.284   family with sequence similarity 3, member B isoform ...
FAM3B                 0.280   family with sequence similarity 3, member B isoform ...
POMGNT1               0.085   O-linked mannose beta1,2-N-acetylglucosaminyltransf...
KIAA1199              0.078   KIAA1199 
TMEM2                 0.039   transmembrane protein 2 isoform b 
TMEM2                 0.039   transmembrane protein 2 isoform a 
ACADS                 0.009   short-chain acyl-CoA dehydrogenase precursor 
ASAH1                 0.007   N-acylsphingosine amidohydrolase 1 isoform a prepro...
ASAH1                 0.007   N-acylsphingosine amidohydrolase 1 isoform b 
NKTR                  0.007   natural killer-tumor recognition sequence 
STAU1                 0.007   staufen isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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