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Search of human proteins with 4507961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507961 zinc finger protein 36, C3H type, homolog [Homo
sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 684 0.0
gi|15812180 butyrate response factor 1 [Homo sapiens] 155 4e-38
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 146 2e-35
gi|28559039 mediator complex subunit 1 [Homo sapiens] 59 6e-09
gi|163965366 nascent polypeptide-associated complex alpha subuni... 55 6e-08
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 53 3e-07
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 52 9e-07
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 52 9e-07
gi|146134388 YLP motif containing 1 [Homo sapiens] 49 6e-06
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 47 2e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 47 3e-05
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 46 4e-05
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi... 46 5e-05
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 46 5e-05
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 46 5e-05
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 46 5e-05
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 46 5e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 1e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 45 1e-04
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 44 1e-04
gi|40548415 dishevelled associated activator of morphogenesis 2 ... 44 1e-04
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 44 1e-04
gi|194272180 plexin B1 [Homo sapiens] 44 2e-04
gi|40254442 plexin B1 [Homo sapiens] 44 2e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 44 3e-04
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 44 3e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 44 3e-04
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 44 3e-04
gi|73695473 roquin [Homo sapiens] 44 3e-04
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 684 bits (1766), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTS 60
MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTS
Sbjct: 1 MDLTAIYESLLSLSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTS 60
Query: 61 LVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRY 120
LVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRY
Sbjct: 61 LVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRY 120
Query: 121 GAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPV 180
GAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPV
Sbjct: 121 GAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPV 180
Query: 181 LRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPL 240
LRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPL
Sbjct: 181 LRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPL 240
Query: 241 ARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFE 300
ARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFE
Sbjct: 241 ARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFE 300
Query: 301 AGVFAPPQPVAAPRRLPIFNRISVSE 326
AGVFAPPQPVAAPRRLPIFNRISVSE
Sbjct: 301 AGVFAPPQPVAAPRRLPIFNRISVSE 326
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 155 bits (393), Expect = 4e-38
Identities = 104/266 (39%), Positives = 125/266 (46%), Gaps = 46/266 (17%)
Query: 84 GPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYK 143
G L P+ P SRYKTELCR F E+G C+YG KCQFAHG+ ELR RHPKYK
Sbjct: 95 GERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYK 154
Query: 144 TELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPG------HPPVLRQSISFSGLPSGRRTS 197
TELC F+ G CPYG RCHFIHN E A G P L+ S SF+G PS T+
Sbjct: 155 TELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSAAATA 214
Query: 198 PPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRAT 257
+ + SP+S PPP LS +P P +P
Sbjct: 215 ---------AATGLLDSPTSITPPP---ILSADDLLGSPTLPDGTNNPFAFSSQELASLF 262
Query: 258 PISVWGPLGGLVRT----------------PSVQSLGSDPDEY-ASSGSSLGGSDSPVFE 300
S+ P GG T PS Q SD + Y +SS SS GSDSP +
Sbjct: 263 APSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLD 322
Query: 301 AGVFAPPQPVAAPRRLPIFNRISVSE 326
RRLPIF+R+S+S+
Sbjct: 323 NS-----------RRLPIFSRLSISD 337
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 146 bits (369), Expect = 2e-35
Identities = 83/175 (47%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 102 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSR 161
+RYKTELCR F ESG C+YG KCQFAHG ELR RHPKYKTELC F+ G CPYG R
Sbjct: 152 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPR 211
Query: 162 CHFIHNPSEDLAAP-------------------GHP----PVLRQSISFSGLPSGRRTSP 198
CHFIHN E AP G P P L S+SFSG PSG
Sbjct: 212 CHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHH--Q 269
Query: 199 PPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSC 253
PP GL P L SP+S PPP + S S+A A TP P+C
Sbjct: 270 PPGGLESPLLLD---SPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTC 321
Score = 41.2 bits (95), Expect = 0.001
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 214 SPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPS 273
+P + PP P L P+ +A P P + + P RR + V+ PS
Sbjct: 404 APPAQPPAPPSATL-PAGAAAPPSPPFSFQLP--------RRLSDSPVFDA------PPS 448
Query: 274 VQSLGSDPDEYAS---SGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 326
SD D Y S S SL GS+SP + G RRLPIF+R+S+S+
Sbjct: 449 PPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG-----------RRLPIFSRLSISD 493
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 58.9 bits (141), Expect = 6e-09
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 27/299 (9%)
Query: 20 PSDHGGTESSPGWGSSGPWSLSPSDS---SPSGVTSRLPGRSTSLVEGR----SCGWVPP 72
P T S+ G P +D+ SPS +S P + G S G
Sbjct: 992 PGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQT 1051
Query: 73 PPGFA-PLAPRLGPELSPSPTSPTATSTTPSRYKTE--LCRTFSESGRCRYGAKCQFAHG 129
PPG A P P++ ++ P T ++ S+Y + + + S+S + A
Sbjct: 1052 PPGVATPPIPKITIQI-PKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSAST 1110
Query: 130 LGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSG 189
G+++ + ++L Y S+ N S+ PG P+ + +S
Sbjct: 1111 SGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSK---NSSQSGGKPGSSPITKHGLSSGS 1167
Query: 190 LPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC 249
+ + P L PSLS + SPS S PP G L+ S PGTP + + +P+
Sbjct: 1168 SSTKMKPQGKPSSLMNPSLSKPNISPSHSRPPGGSDKLA-SPMKPVPGTPPSSKAKSPIS 1226
Query: 250 ----------CPSCRRATPISVWGPLGGLVR--TPSVQSLGSDPDEYASSGSSLGGSDS 296
S S G G L + PS S + ++SSGSS+ S +
Sbjct: 1227 SGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQN 1285
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 55.5 bits (132), Expect = 6e-08
Identities = 92/334 (27%), Positives = 121/334 (36%), Gaps = 63/334 (18%)
Query: 15 PDVPVPSDHGGTES-SPGWGSSGPWSLSPSDS------SPSGVTSRLPGRSTSLVEGR-- 65
P PS GG + SP W + P + PS SP G + S G
Sbjct: 943 PAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPAT 1002
Query: 66 -SCGWVPPPPGFAPLAPRLGPELSPSP----TSPTATSTTP--SRYKTELCRTFSESGRC 118
S P PP P +P+ P +P P T P AT +P S T L +
Sbjct: 1003 PSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPK-------- 1054
Query: 119 RYGAKCQFAHGLGELRQANRHPKYK--------TELCHKFYLQGRCPYGSRCHFIHNPSE 170
GA A L + P K T K P G+ P
Sbjct: 1055 --GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGA-------PMP 1105
Query: 171 DLAAPGHPPVLRQSISFSGLPSGRRTSPPPP--GLAGPSLSSSSFSPSSSPP-------- 220
A P P + G P+ +PP P GLA P + +P+++PP
Sbjct: 1106 PAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1165
Query: 221 -PPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGS 279
PP P +P+A +P LA P+P P+ ATP S P GGL TPS + +
Sbjct: 1166 PPPKGAPTTPAATPPSPKGGLA--TPSPKGAPTTPAATPPS---PKGGLA-TPSPKGAPT 1219
Query: 280 DPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
P A+ S GG +P + AP P A P
Sbjct: 1220 TP--AATPPSPKGGLATPSPKG---APTTPAATP 1248
Score = 48.9 bits (115), Expect = 6e-06
Identities = 89/327 (27%), Positives = 112/327 (34%), Gaps = 52/327 (15%)
Query: 15 PDVPVPSDHGG---TESSPGWGSSGPWSLS-PSDSSPSGVTSRLPGRSTSLVEGR---SC 67
P P P T SSP + P P+ SP G + S G S
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959
Query: 68 GWVPPPPGFAPLAPRLGPEL-SP--SPTSPTAT-------STTPSRYKTELCRTFSESGR 117
W P PP P +P+ GP SP +PT P AT TPS +
Sbjct: 960 KWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSP 1019
Query: 118 CRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGH 177
A F G A+ P P G+ P+ L +P
Sbjct: 1020 KGSPAATPFPKG------ASTPPAATPPSPKGSPAATPLPKGAPT----TPAATLPSPKG 1069
Query: 178 PPVLRQSISFSGLPSGRRTSPPPP--GLAGPSLSSSSFSPSSSPP-PPGDLPLSPSAFSA 234
P + S G P+ +PP P G A PS + P+++PP P G L P
Sbjct: 1070 GPA---TPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPP--HKG 1124
Query: 235 APGTPLAR--------RDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYAS 286
AP TP A P P P+ ATP S P GGL P G+ A+
Sbjct: 1125 APTTPAATPPSPKGGLATPPPKGAPTTPAATPPS---PKGGLATPP---PKGAPTTPAAT 1178
Query: 287 SGSSLGGSDSPVFEAGVFAPPQPVAAP 313
S GG +P + AP P A P
Sbjct: 1179 PPSPKGGLATPSPKG---APTTPAATP 1202
Score = 48.9 bits (115), Expect = 6e-06
Identities = 79/312 (25%), Positives = 109/312 (34%), Gaps = 49/312 (15%)
Query: 14 SPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPP 73
+P +PS GG + G+ P + +P SP G G +T +G P P
Sbjct: 1059 TPAATLPSPKGGPATPSLKGAPTPPAATPP--SPKG------GPATPSPKG-----APMP 1105
Query: 74 PGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGEL 133
P P +P+ G P +PT + TP K L + A G
Sbjct: 1106 PAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG---- 1161
Query: 134 RQANRHPK------YKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISF 187
A PK T K L P G+ P+ A P P + S
Sbjct: 1162 GLATPPPKGAPTTPAATPPSPKGGLATPSPKGA-------PTTPAATPPSPKGGLATPSP 1214
Query: 188 SGLPSGRRTSPPPP--GLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDP 245
G P+ +PP P GLA PS + +P+++PP P P TP + P
Sbjct: 1215 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP----------KGGPATPPPKGAP 1264
Query: 246 TPVCC--PSCR--RATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEA 301
TP PS + ATP P +V PS + P G+ + +P
Sbjct: 1265 TPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK---GGPATSPPKGAPTPPAATPPSPK 1321
Query: 302 GVFAPPQPVAAP 313
G P P AP
Sbjct: 1322 GSPGTPPPKGAP 1333
Score = 48.5 bits (114), Expect = 8e-06
Identities = 60/250 (24%), Positives = 94/250 (37%), Gaps = 39/250 (15%)
Query: 14 SPDVPVPSDHGGTESSPGWGSSGPWSLSPSD--SSPSGVTSRLPGRSTSLVEGRSCGWVP 71
+P +P P + T SS +S P +++PS +PS +P TS S P
Sbjct: 1561 TPAIPTPKEAPATPSSKE--ASSPPAVTPSTYKGAPSPKELLIPPAVTS----PSPKEAP 1614
Query: 72 PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKC-QFAHGL 130
PP P +P GP +PT+ TPS K T S C+ GA Q + GL
Sbjct: 1615 TPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDS--PTSPASVTCKMGATVPQASKGL 1672
Query: 131 GELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGL 190
A + P E+ AP P++ + + G
Sbjct: 1673 ----PAKKGPTALKEVL-----------------------VAPAPESTPII-TAPTRKGP 1704
Query: 191 PSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCC 250
+ + ++ PP PS + S P S+ P LP+ + A G + P+
Sbjct: 1705 QTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAP 1764
Query: 251 PSCRRATPIS 260
P + +TP++
Sbjct: 1765 PESKASTPLT 1774
Score = 47.4 bits (111), Expect = 2e-05
Identities = 81/325 (24%), Positives = 104/325 (32%), Gaps = 59/325 (18%)
Query: 13 LSPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSC----- 67
+ P PS GG + P G+ P + + + SP G + P + +
Sbjct: 1104 MPPAATPPSPKGGLATPPHKGA--PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG 1161
Query: 68 GWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFA 127
G PPP AP P P PSP AT + T S G G
Sbjct: 1162 GLATPPPKGAPTTPAATP---PSPKGGLATPSPKGAPTTPAATPPSPKG----GLATPSP 1214
Query: 128 HGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISF 187
G A T K L P G+ P P PP
Sbjct: 1215 KGAPTTPAA-------TPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPP 1267
Query: 188 SGLP---SGRRTSPPPPGLAGPSL---SSSSFSPSSSPP-----PPGDLPLSPSAFSAAP 236
+ P G +PP G P++ S P++SPP PP P SP +P
Sbjct: 1268 AATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKG---SP 1324
Query: 237 GTPLARRDPTPVC--------CPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSG 288
GTP + PTP P+ TP S GP TPS + P A++
Sbjct: 1325 GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGP-----TTPSSK---EGPTPPAATP 1376
Query: 289 SSLGGSDSPVFEAGVFAPPQPVAAP 313
S GG PP P P
Sbjct: 1377 SHKGGP--------AMTPPSPKRGP 1393
Score = 45.4 bits (106), Expect = 7e-05
Identities = 78/302 (25%), Positives = 112/302 (37%), Gaps = 46/302 (15%)
Query: 14 SPDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPP 73
S D P + H T SP G+ P +++P SP GVT LP + T + + P
Sbjct: 846 SKDSPATT-HSPTPPSPK-GAPTPSAVTPL--SPKGVT--LPPKETPTPSVVNLPF--PK 897
Query: 74 PGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGEL 133
G A AP+ P LS + +SP TP+ + + S G A + G
Sbjct: 898 EGPATPAPKQAPALSMTSSSPKKARATPA--PKGIPASPSPKGAPTPPAATPPSPKGG-- 953
Query: 134 RQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSG 193
A PK+ P+ A P P + S G P+
Sbjct: 954 -PATPSPKWA------------------------PTPPAATPPSPKGGPATPSPKGAPTP 988
Query: 194 RRTSPPPP--GLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCP 251
+PP P G A PS + P+ +PP P P + + F TP A P+P P
Sbjct: 989 PAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSP-AATPFPKGASTPPAATPPSPKGSP 1047
Query: 252 SCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVA 311
+ ATP+ P PS + + P + G+ + +P G A P P
Sbjct: 1048 A---ATPLPKGAPTTPAATLPSPKGGPATP---SLKGAPTPPAATPPSPKGGPATPSPKG 1101
Query: 312 AP 313
AP
Sbjct: 1102 AP 1103
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/159 (29%), Positives = 63/159 (39%), Gaps = 24/159 (15%)
Query: 174 APGHPPVLRQSISFSGLPSGRRTSPPPPGL-AGPSLSSSSFSPSSSPPPPGDLPLSPSAF 232
AP P L + S P R +P P G+ A PS + P+++PP P P +PS
Sbjct: 904 APKQAPALSMT---SSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP- 959
Query: 233 SAAPGTPLAR--------RDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY 284
AP P A P+P P+ ATP S P GG TPS + + P
Sbjct: 960 KWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS---PKGG-PATPSPKGAPTPP--A 1013
Query: 285 ASSGSSLGGSDSPVFEAG-----VFAPPQPVAAPRRLPI 318
+ S G + F G PP P +P P+
Sbjct: 1014 VTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052
Score = 39.7 bits (91), Expect = 0.004
Identities = 73/328 (22%), Positives = 112/328 (34%), Gaps = 66/328 (20%)
Query: 15 PDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSC-----GW 69
P PS G + P G+ P +++P SP G T LP + S G + G
Sbjct: 1313 PAATPPSPKGSPGTPPPKGAPTPPAVTPP--SPKG-TPTLPATTPSSKGGPTTPSSKEGP 1369
Query: 70 VPPP--------PGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYG 121
PP P P +P+ GP + PT+ + P K + G
Sbjct: 1370 TPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAA--- 1426
Query: 122 AKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVL 181
G+L P T + K + P S AP P
Sbjct: 1427 -----TPSKGDLT-----PPAVTPVSLK-----KAPATS-------------APKGGPAT 1458
Query: 182 RQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDL------PLSPSAFSAA 235
S LP+ SP P P ++S SP +P P + + PS+
Sbjct: 1459 PSSKGDPTLPAVTPPSPKEP--PAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEV 1516
Query: 236 PGTPLARRDPTPVCCPSCRRATPISVWGPLGGLV----------RTPSVQSLGSDPDEYA 285
P TP +RRDP + TP ++ P L+ +TP++ + P +
Sbjct: 1517 PATPSSRRDPIAPTATLLSKKTPATL-APKEALIPPAMTVPSPKKTPAIPTPKEAPATPS 1575
Query: 286 SSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
S +S + +P G +P + + P
Sbjct: 1576 SKEASSPPAVTPSTYKGAPSPKELLIPP 1603
Score = 35.8 bits (81), Expect = 0.053
Identities = 44/170 (25%), Positives = 60/170 (35%), Gaps = 24/170 (14%)
Query: 168 PSEDLAAP------GHPPVLRQSISFSGLPSGRRTSPPPP--GLAGPSLSSSSFSPSSSP 219
P+ED A G L S S G+ +T PP G AGP + S SP
Sbjct: 771 PTEDSGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSP 830
Query: 220 PPPGDLPLSPSAFSAAPGTPLARRDPTPVC---CPSCRRATPISVWG--------PLGGL 268
LP + +F + +P PTP P+ TP+S G P +
Sbjct: 831 VEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSV 890
Query: 269 VRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEA-----GVFAPPQPVAAP 313
V P + + P + S+ S A G+ A P P AP
Sbjct: 891 VNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940
Score = 30.8 bits (68), Expect = 1.7
Identities = 82/344 (23%), Positives = 113/344 (32%), Gaps = 57/344 (16%)
Query: 14 SPDVPVPSDHGGTESSPGWGSSGPWSLSPS-DSSPSGVTSRLPGRSTSLVEGRSCGWVPP 72
+P PS GG +P GP SP D + V P ++ + R P
Sbjct: 1370 TPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPS 1429
Query: 73 -----PPGFAPL---------APRLGPELSPSPTSPTATSTT-PSRYKTELCRTFSESGR 117
PP P+ AP+ GP S PT + T PS + + + S
Sbjct: 1430 KGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSS 1489
Query: 118 CRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGH 177
+ G L + R P + + AP
Sbjct: 1490 PKKAPATPAPMGAPTLPAVIPSSPKEVPATPS---SRRDPIAPTATLLSKKTPATLAPKE 1546
Query: 178 ---PPVLRQSISFSGLPSGRRT---SPPPPGLAGPSLSSSSFSPSSSP------PPPGDL 225
PP + +PS ++T P A PS +S P+ +P P P +L
Sbjct: 1547 ALIPPAMT-------VPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKEL 1599
Query: 226 PLSPSAFSAAP---GTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPD 282
+ P+ S +P TP A P+P P ATP P V TPS SL P
Sbjct: 1600 LIPPAVTSPSPKEAPTPPAVTPPSPEKGP----ATPAPKGTPTSPPV-TPS--SLKDSPT 1652
Query: 283 EYASSGSSLGGSDSPVFEAGVFAPPQPVA--------APRRLPI 318
AS +G + P G+ A P A AP PI
Sbjct: 1653 SPASVTCKMGAT-VPQASKGLPAKKGPTALKEVLVAPAPESTPI 1695
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 53.1 bits (126), Expect = 3e-07
Identities = 81/311 (26%), Positives = 114/311 (36%), Gaps = 42/311 (13%)
Query: 12 SLSPDVPV--PSDHGG-TESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCG 68
S SP P P GG T SP + + P S SP+ S S + S S S
Sbjct: 1592 SYSPTSPAYEPRSPGGYTPQSPSYSPTSP-SYSPTSPSYSPTSPNYSPTSPSY-SPTSPS 1649
Query: 69 WVPPPPGFAPLAPRLGPEL-SPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFA 127
+ P P ++P +P P S SPTSP+ + T+PS T ++S +
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPS--------- 1698
Query: 128 HGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISF 187
+ P Y P S ++P+ +P P S S+
Sbjct: 1699 -------YSPTSPSYSPT----------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741
Query: 188 SGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPG---TPLARRD 244
S P+ SP P S S S SPS SP P P SP+ +P T +
Sbjct: 1742 S--PTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799
Query: 245 PTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVF--EAG 302
+P PS R TP S +PS S +Y + S S SP + +
Sbjct: 1800 TSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPS-SPEYTPTSP 1858
Query: 303 VFAPPQPVAAP 313
++P P +P
Sbjct: 1859 KYSPTSPKYSP 1869
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 17/246 (6%)
Query: 20 PSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPL 79
P+ + +SP + + P S SP+ S S + S S S + P P ++P
Sbjct: 1645 PTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPT 1702
Query: 80 APRLGPEL-SPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANR 138
+P P S SPTSP+ + T+PS T ++S + ++ +
Sbjct: 1703 SPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPNYSPTSPNYTPTS- 1759
Query: 139 HPKYK-TELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTS 197
P Y T + P ++P+ +P P S S+S PS R +
Sbjct: 1760 -PSYSPTSPSYSPTSPNYTPTSPN----YSPTSPSYSPTSPSYSPTSPSYS--PSSPRYT 1812
Query: 198 PPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPG-TPLA-RRDPT-PVCCPSCR 254
P P S S S SPS SP P P SPS ++P TP + + PT P P+
Sbjct: 1813 PQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1872
Query: 255 RATPIS 260
+ +P S
Sbjct: 1873 KYSPTS 1878
Score = 46.2 bits (108), Expect = 4e-05
Identities = 74/294 (25%), Positives = 111/294 (37%), Gaps = 27/294 (9%)
Query: 12 SLSPDVPV--PSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGW 69
S SP P P+ + +SP + + P S SP+ S S + S S S +
Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSY-SPTSPNY 1748
Query: 70 VPPPPGFAPLAPRLGPEL-SPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAH 128
P P + P +P P S SPTSP T T+P+ T S S + ++
Sbjct: 1749 SPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP----SYSPTSPSYSPTSPSY 1804
Query: 129 GLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFS 188
R + P Y P S ++P+ P P S ++
Sbjct: 1805 SPSSPRYTPQSPTYTPS----------SPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYT 1854
Query: 189 GLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAP-GTPLA-RRDPT 246
P+ + SP P + S S SP+ SP P P SP+ +P TP + + PT
Sbjct: 1855 --PTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 247 -PVCCPSCRRATPIS-VWGPLGGLVRTPSVQSLGSDPDE--YASSGSSLGGSDS 296
P P+ + +P S + P T S S G P Y+ + ++ DS
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDS 1966
Score = 44.3 bits (103), Expect = 1e-04
Identities = 64/235 (27%), Positives = 86/235 (36%), Gaps = 34/235 (14%)
Query: 29 SPGW----GSSG-PWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPRL 83
SP W GS G P SP SP G S ++ E RS P G+ P +P
Sbjct: 1562 SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRS------PGGYTPQSP-- 1613
Query: 84 GPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYK 143
S SPTSP+ + T+PS T +S + ++ + P Y
Sbjct: 1614 ----SYSPTSPSYSPTSPSYSPTS--PNYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYS 1665
Query: 144 TELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGL 203
P S ++P+ +P P S S+S P+ SP P
Sbjct: 1666 P----------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSY 1713
Query: 204 AGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATP 258
+ S S S SPS SP P P SPS +P + TP PS +P
Sbjct: 1714 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPT-SPSYSPTSP 1767
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 51.6 bits (122), Expect = 9e-07
Identities = 51/173 (29%), Positives = 68/173 (39%), Gaps = 51/173 (29%)
Query: 105 KTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHF 164
K E+C F + G C GAKC+ H L LC F +G CP G++C
Sbjct: 752 KAEVCSDFLK-GYCPLGAKCKKKHTL---------------LCPDFARRGACPRGAQCQL 795
Query: 165 IH----------------NPSEDLA----APGHPP--------VLRQSISFSGLPSGRRT 196
+H PS+ A + H P RQ+ S + L +
Sbjct: 796 LHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPTRQTPSSAALTAAAVA 855
Query: 197 SPP--PPGLAGPSLSSSSFSPSSSPPPPGDL-----PLSPSAFSAAPGTPLAR 242
+PP P G A PS S +S S SSS PP L L +A +AA L +
Sbjct: 856 APPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAAACSNRLCK 908
Score = 35.4 bits (80), Expect = 0.069
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 86 ELSPSPTSPTATSTTPSRYKTELCRT--FSESGRC-RYGAKCQFAHGLGELRQANRHPKY 142
+LS + P+ + P L RT +G C R A L +RQA + +
Sbjct: 615 KLSKTSGQPSDAGSRP------LLRTGRLDPAGSCSRSLASRAVQRSLAIIRQARQRREK 668
Query: 143 KTELCHKFYLQGRCPYGSRCHFIHNPSE 170
+ E C + GRC G RC +IH+P +
Sbjct: 669 RKEYCMYYNRFGRCNRGERCPYIHDPEK 696
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 51.6 bits (122), Expect = 9e-07
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 32/155 (20%)
Query: 112 FSESGRCRYGAKCQFAHGLGELRQANRHPK-YKTELCHKFYLQGRCPYGSRCHFIH---- 166
+ + G+C G CQ+ H E + HP+ YK+ C+ G CP G C F H
Sbjct: 342 WGDPGKCENGDACQYCHTRTEQQF---HPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQP 398
Query: 167 ------NPSEDLAAPGHP-PVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSF-SPSS- 217
PS +++P P PVL + +SP P L+ +SS SPS+
Sbjct: 399 PLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNL 458
Query: 218 --SPPP-------------PGDLPLSPSAFSAAPG 237
SPP PG+ L+P ++ APG
Sbjct: 459 CGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPG 493
Score = 49.7 bits (117), Expect = 4e-06
Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 21/191 (10%)
Query: 97 TSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELC------HKF 150
T+ YKTE C+ CR G C + H + R++ R KY++ C ++
Sbjct: 285 TAYVLGNYKTEPCK--KPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEW 342
Query: 151 YLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLA---GPS 207
G+C G C + H +E HP + + + SG P A P
Sbjct: 343 GDPGKCENGDACQYCHTRTEQ---QFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPP 399
Query: 208 LSS--SSFSPSSSPPPPGDLPLSPSA----FSAAPGTPLARRDPTPVCCPSCRRATPISV 261
LS S SSP PG + PSA +P +P A D + + C + +P ++
Sbjct: 400 LSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHA-PDLSALLCRNSSLGSPSNL 458
Query: 262 WGPLGGLVRTP 272
G G +R P
Sbjct: 459 CGSPPGSIRKP 469
Score = 28.5 bits (62), Expect = 8.5
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 80 APRLGPELSPSPTSPTATSTTPSRY-----KTELCRTFSES-GRC-RYGAKCQFAHGLGE 132
A L PE P T T RY KT +C ++S G C + G C FAHG +
Sbjct: 172 ATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGPHD 231
Query: 133 LR 134
LR
Sbjct: 232 LR 233
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 48.9 bits (115), Expect = 6e-06
Identities = 54/193 (27%), Positives = 74/193 (38%), Gaps = 51/193 (26%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSP------------ 215
P + P PP L S+ G+P ++ PPP L PSLSS+ P
Sbjct: 556 PPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAP 615
Query: 216 ---------SSSPPPPGDLPLS-----PSAFSAAPGTPLAR-------RDPTPVCCPSCR 254
SS+ PPPG P P +AAP P + P P P
Sbjct: 616 PPVMPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLP--- 672
Query: 255 RATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLG---------GSDSPVFEAGVFA 305
TP+S +G P +QS G P E +S + L SD + E+ A
Sbjct: 673 --TPVS-FGSAPPTTYHPPLQSAG--PSEQVNSKAPLSKSALPYSSFSSDQGLGESSA-A 726
Query: 306 PPQPVAAPRRLPI 318
P QP+ A + +P+
Sbjct: 727 PSQPITAVKDMPV 739
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 178 PPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPG 237
PPVL S+ +P + PPPG+ P + S P+S PPP +P S S+ P
Sbjct: 535 PPVLPPSLPPPVMPPALPATVPPPGMPPPVMPPS--LPTSVPPP--GMPPSLSSAGPPPV 590
Query: 238 TP---LARRDPTPVCCPSCRRAT---PISVWGPLGGLVRTPSVQSLG 278
P L+ P PV P +T P+ PL P + G
Sbjct: 591 LPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPG 637
Score = 36.2 bits (82), Expect = 0.041
Identities = 65/264 (24%), Positives = 87/264 (32%), Gaps = 46/264 (17%)
Query: 72 PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLG 131
PPP P P PE SP P ++STTP+ + +F E L
Sbjct: 15 PPPPVPPPPPVALPEASPGPGY--SSSTTPAAPSSSGFMSFREQH-------------LA 59
Query: 132 ELRQANR-HPKYKTELCHKFYLQGR-------CPYGSRCHFIHNPSEDLAAPGHPPVLRQ 183
+L+Q + H K + +L P G + P + P P + Q
Sbjct: 60 QLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDW-QPPPPPMPPPPGPALSYQ 118
Query: 184 SISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARR 243
PPGL L S P S P PPG ++ P P +
Sbjct: 119 KQQQYKHQMLHHQRDGPPGLVPMELESP---PESPPVPPGSYMPPSQSYMPPPQPPPSYY 175
Query: 244 DPT------PVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSL--GGSD 295
PT P PS ++ P + L TPS S S Y S S
Sbjct: 176 PPTSSQPYLPPAQPSPSQSPPSQSY-----LAPTPSYSSSSSSSQSYLSHSQSYLPSSQA 230
Query: 296 SPV------FEAGVFAPPQPVAAP 313
SP ++ + APP P A P
Sbjct: 231 SPSRPSQGHSKSQLLAPPPPSAPP 254
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 47.4 bits (111), Expect = 2e-05
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 109 CRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNP 168
CR + E G C G C F HG + + L G P+ ++ + P
Sbjct: 294 CRDYDEKGFCMRGDMCPFDHGSDPV------------VVEDVNLPGMLPFPAQPPVVEGP 341
Query: 169 SEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLS 228
P PP+L P R PPPG PSL P + PPPP PL
Sbjct: 342 PPP-GLPPPPPILTPP------PVNLRPPVPPPGPLPPSL-----PPVTGPPPPLP-PLQ 388
Query: 229 PSAFSAAPGT 238
PS A P +
Sbjct: 389 PSGMDAPPNS 398
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 46.6 bits (109), Expect = 3e-05
Identities = 90/332 (27%), Positives = 113/332 (34%), Gaps = 63/332 (18%)
Query: 20 PSDHGGTE--SSPGWGSSGPWSLSPSDSSPSGV-TSRLPGRSTSLVEGRSCGWVPPPPGF 76
PS GG + +S SS SP+ S PS T R P S + + + PP
Sbjct: 219 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHP-SQPKPKGLQALRPPQVT 277
Query: 77 AP---LAPRLGPELS-----------PSPTSPTATSTTPSRYKTELCRTFSESGRCRYGA 122
P AP LGP S PSP++P + T PS T + + G A
Sbjct: 278 PPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA 337
Query: 123 KCQF------------------AHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHF 164
F A L L QA P L + P H
Sbjct: 338 THSFLPSPPLSPLATPPPQAPPALALPPL-QAPPSPPASPPLSPLATPSPQAPNALAVHL 396
Query: 165 IHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPP---PPGLAGPSLSSSSFSPSSSPPP 221
+ P + P PPV + P +PP PP LA P L P P
Sbjct: 397 LQAP---FSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPL-------QVPPSP 446
Query: 222 PGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDP 281
P P+SPSA TP + P P+ P + A P P + TP +Q+L S P
Sbjct: 447 PASPPMSPSA------TP-PPQAPPPLAAPPLQLAKPPPQAPP---ALATPPLQALPSPP 496
Query: 282 DEYASSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
AS S S A P P A P
Sbjct: 497 ---ASFPGQAPFSPSASLPMSPLATPPPQAPP 525
Score = 38.9 bits (89), Expect = 0.006
Identities = 44/160 (27%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 169 SEDLAAPGHPPVLRQSISFSG--LPSGRRTSPPPPG-------LAGPSLSSSSFSPSSSP 219
S L AP PP S SG L PPPP L+GP L+ S S +S+P
Sbjct: 541 SPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 600
Query: 220 P----------------PPGDLPLS---PSAFSAAPGTPLARRDPTPVCCPSCRRATP-- 258
PP D L+ P+A+S P PLA R P P
Sbjct: 601 EELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGS 660
Query: 259 ----ISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS 294
+++ G TP+ +L P S G + G+
Sbjct: 661 ADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGA 700
Score = 37.4 bits (85), Expect = 0.018
Identities = 54/175 (30%), Positives = 67/175 (38%), Gaps = 34/175 (19%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSP-----PPP 222
P A P PP ++ L + PP LA P L + P+S P P
Sbjct: 451 PMSPSATP--PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPS 508
Query: 223 GDLPLSPSAF---SAAP--GTPLARRDPTPVCCPSC----RRATP---ISVWGPLGGLV- 269
LP+SP A A P PL + P+P P+ R TP SV GP L
Sbjct: 509 ASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLAL 568
Query: 270 ---------RTPSVQSLGSDPDEYASSGSS----LGGSDSPVFEAGVFAPPQPVA 311
R+PS G D ++SS +S L G DS E G A P P A
Sbjct: 569 APGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGP-EGGAAASPPPDA 622
Score = 32.0 bits (71), Expect = 0.77
Identities = 81/345 (23%), Positives = 115/345 (33%), Gaps = 53/345 (15%)
Query: 18 PVPSDHGGTESSPGWGSS----GPWS-----LSPSDSSPSGVTSRLPGRSTSLVEGR--S 66
P + G SSPG S GP +S ++ G + P RS R +
Sbjct: 96 PAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDT 155
Query: 67 CGWVP--PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYG--A 122
G P P P A + G E+ +P+A P+ + + SE A
Sbjct: 156 SGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA 215
Query: 123 KCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLR 182
+ + + G G R A+R P S + AP HP +
Sbjct: 216 RRRPSAGGGLQRPASRSLS-----------SSATPLSSPARSGPSARGTPRAPAHPSQPK 264
Query: 183 QSISFSGLPSGRRTSPPPPG-----LAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPG 237
GL + R PP GP SS +PS S PP P S + P
Sbjct: 265 PK----GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPA 320
Query: 238 TPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTP-------SVQSLGSDPDEYASSGSS 290
TP ++ T + P+ + PL L P ++ L + P AS S
Sbjct: 321 TPPSQA-TTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLS 379
Query: 291 LGGSDSP---------VFEAGVFAPPQ-PVAAPRRLPIFNRISVS 325
+ SP + +A PP PV AP P +S S
Sbjct: 380 PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS 424
Score = 31.6 bits (70), Expect = 1.0
Identities = 78/315 (24%), Positives = 105/315 (33%), Gaps = 55/315 (17%)
Query: 44 DSSPSGVTSRLPG-RSTSLVEGRSCGWVPPPP----------------GFAPLAPRLG-- 84
D + +G +R P R+ L+ R G PPP G PLA R G
Sbjct: 6 DKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGI 65
Query: 85 -----PELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRH 139
PE +P PT TS P+ + E + G G R
Sbjct: 66 GGATIPESAPR-AGPTRTSRPPASGRGERAPPAKNTSP---GPVSSPGRASGTTRPGPLG 121
Query: 140 PKYKTELCHKFYLQGRCPYG-SRCHFIHNPSEDLAAPG----HPPVLRQSISFS---GLP 191
K + +G+ R D + P P + R+S + GLP
Sbjct: 122 QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLP 181
Query: 192 SGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA--APGTPLARRDPTPVC 249
++ P P GP S SS S S+ P PSA P + TP+
Sbjct: 182 RPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLS 241
Query: 250 CPS----CRRATPISVWGPL----GGL--VRTPSVQSLGSDPDEYASSGSSLGG-SDSPV 298
P+ R TP + P GL +R P V D + +LG S SP+
Sbjct: 242 SPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKD------AAPALGPLSSSPL 295
Query: 299 FEAGVFAPPQPVAAP 313
APP P A P
Sbjct: 296 ATPSPSAPPSPSAPP 310
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 46.2 bits (108), Expect = 4e-05
Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 109 CRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNP 168
CR F G CR G++C F+H L AN P + +C K+Y +G C YG+RC + H
Sbjct: 8 CRYFMH-GVCREGSQCLFSHDL-----ANSKP---STIC-KYYQKGYCAYGTRCRYDHT- 56
Query: 169 SEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPP 201
AA G + S+ PS SP PP
Sbjct: 57 RPSAAAGGAVGTMAHSV-----PSPAFHSPHPP 84
Score = 28.5 bits (62), Expect = 8.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 149 KFYLQGR--CPYGSRCHFIH-NPSEDLAAPGHPPVLRQSISFSG 189
K++ QG+ CP+GS+C + H P LA P P R+ +S G
Sbjct: 328 KYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP---RKQLSSQG 368
>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
sapiens]
Length = 650
Score = 45.8 bits (107), Expect = 5e-05
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 43/182 (23%)
Query: 101 PSRY-KTELCRTFSE--SGRCRYGAKCQFAHGLG---ELRQANRHPKYKTELCHKFYLQG 154
P+ Y K LC + + + +C +G +C+F H +G E + A+ P+ C F G
Sbjct: 115 PTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRYLETKPADLGPR-----CVLFETFG 169
Query: 155 RCPYGSRCHFI---------HNPSEDLAAPG-HPPVLR-------------QSISFSGLP 191
RCPYG C F + E+LAA G PP +R + + F
Sbjct: 170 RCPYGVTCRFAGAHLRPEGQNLVQEELAARGTQPPSIRNGLDKALQQQLRKREVRFERAE 229
Query: 192 SGRR--TSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC 249
R + P P A P +++ +P +P A PGT P C
Sbjct: 230 QALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQQVP-------AGPGTSTPPSSPVRTC 282
Query: 250 CP 251
P
Sbjct: 283 GP 284
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 175 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA 234
P PP L ++S S L + ++PPPP P +++ + PPPP L ++P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHP 384
Query: 235 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDP 281
AP P+A P P RA P+ P+ L + VQ L P
Sbjct: 385 AP-PPIA--PPLVQPSPPVARAAPVCETVPVHPLPQ-GEVQGLPPPP 427
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 196 TSPPPPGLAGPSLSSSSF--SPSSSPPPPGDLPLSPSAFS-AAPGTP-----------LA 241
T PPPP +LS+SS S +S+PPPP P P A + AP P +
Sbjct: 323 TPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVL 382
Query: 242 RRDPTPVCCPSCRRATPISVWGPL 265
P P+ P + + P++ P+
Sbjct: 383 HPAPPPIAPPLVQPSPPVARAAPV 406
Score = 29.6 bits (65), Expect = 3.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 178 PPVLR-----QSISFSGLPSGRRTS----PPPPGLAGPSL-SSSSFSPSSSPPPPGDLPL 227
PPV R +++ LP G PPPP L P + SS + ++ PP L
Sbjct: 398 PPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP 457
Query: 228 SPSAFSAAPGTPLARRDPTP 247
+P S APG + P+P
Sbjct: 458 TP---STAPGPHVPLMPPSP 474
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 175 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA 234
P PP L ++S S L + ++PPPP P +++ + PPPP L ++P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHP 384
Query: 235 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDP 281
AP P+A P P RA P+ P+ L + VQ L P
Sbjct: 385 AP-PPIA--PPLVQPSPPVARAAPVCETVPVHPLPQ-GEVQGLPPPP 427
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 196 TSPPPPGLAGPSLSSSSF--SPSSSPPPPGDLPLSPSAFS-AAPGTP-----------LA 241
T PPPP +LS+SS S +S+PPPP P P A + AP P +
Sbjct: 323 TPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVL 382
Query: 242 RRDPTPVCCPSCRRATPISVWGPL 265
P P+ P + + P++ P+
Sbjct: 383 HPAPPPIAPPLVQPSPPVARAAPV 406
Score = 29.6 bits (65), Expect = 3.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 178 PPVLR-----QSISFSGLPSGRRTS----PPPPGLAGPSL-SSSSFSPSSSPPPPGDLPL 227
PPV R +++ LP G PPPP L P + SS + ++ PP L
Sbjct: 398 PPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP 457
Query: 228 SPSAFSAAPGTPLARRDPTP 247
+P S APG + P+P
Sbjct: 458 TP---STAPGPHVPLMPPSP 474
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 175 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA 234
P PP L ++S S L + ++PPPP P +++ + PPPP L ++P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHP 384
Query: 235 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDP 281
AP P+A P P RA P+ P+ L + VQ L P
Sbjct: 385 AP-PPIA--PPLVQPSPPVARAAPVCETVPVHPLPQ-GEVQGLPPPP 427
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 196 TSPPPPGLAGPSLSSSSF--SPSSSPPPPGDLPLSPSAFS-AAPGTP-----------LA 241
T PPPP +LS+SS S +S+PPPP P P A + AP P +
Sbjct: 323 TPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVL 382
Query: 242 RRDPTPVCCPSCRRATPISVWGPL 265
P P+ P + + P++ P+
Sbjct: 383 HPAPPPIAPPLVQPSPPVARAAPV 406
Score = 29.6 bits (65), Expect = 3.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 178 PPVLR-----QSISFSGLPSGRRTS----PPPPGLAGPSL-SSSSFSPSSSPPPPGDLPL 227
PPV R +++ LP G PPPP L P + SS + ++ PP L
Sbjct: 398 PPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP 457
Query: 228 SPSAFSAAPGTPLARRDPTP 247
+P S APG + P+P
Sbjct: 458 TP---STAPGPHVPLMPPSP 474
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 175 PGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSA 234
P PP L ++S S L + ++PPPP P +++ + PPPP L ++P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHP 384
Query: 235 APGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDP 281
AP P+A P P RA P+ P+ L + VQ L P
Sbjct: 385 AP-PPIA--PPLVQPSPPVARAAPVCETVPVHPLPQ-GEVQGLPPPP 427
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 196 TSPPPPGLAGPSLSSSSF--SPSSSPPPPGDLPLSPSAFS-AAPGTP-----------LA 241
T PPPP +LS+SS S +S+PPPP P P A + AP P +
Sbjct: 323 TPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAPGVL 382
Query: 242 RRDPTPVCCPSCRRATPISVWGPL 265
P P+ P + + P++ P+
Sbjct: 383 HPAPPPIAPPLVQPSPPVARAAPV 406
Score = 29.6 bits (65), Expect = 3.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 178 PPVLR-----QSISFSGLPSGRRTS----PPPPGLAGPSL-SSSSFSPSSSPPPPGDLPL 227
PPV R +++ LP G PPPP L P + SS + ++ PP L
Sbjct: 398 PPVARAAPVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHP 457
Query: 228 SPSAFSAAPGTPLARRDPTP 247
+P S APG + P+P
Sbjct: 458 TP---STAPGPHVPLMPPSP 474
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.7 bits (104), Expect = 1e-04
Identities = 76/299 (25%), Positives = 103/299 (34%), Gaps = 53/299 (17%)
Query: 39 SLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPRLG---PELSPSPTSPT 95
+L P SSP S ++ ++ ++ +P P + L +L P PSP++P
Sbjct: 295 ALGPLSSSPLATPS-----PSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPP 349
Query: 96 ATSTTPSRYKTELCRTFSESGRCRYGAKCQF------------------AHGLGELRQAN 137
+ T PS T + + G A F A L L QA
Sbjct: 350 SLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPL-QAP 408
Query: 138 RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTS 197
P L + P H + P + P PPV + P +
Sbjct: 409 PSPPASPPLSPLATPSPQAPNALAVHLLQAP---FSPPPSPPVQAPFSPPASPPVSPSAT 465
Query: 198 PP---PPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCR 254
PP PP LA P L P PP P+SPSA TP + P P+ P +
Sbjct: 466 PPSQAPPSLAAPPL-------QVPPSPPASPPMSPSA------TP-PPQAPPPLAAPPLQ 511
Query: 255 RATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
A P P + TP +Q+L S P AS S S A P P A P
Sbjct: 512 LAKPPPQAPP---ALATPPLQALPSPP---ASFPGQAPFSPSASLPMSPLATPPPQAPP 564
Score = 38.9 bits (89), Expect = 0.006
Identities = 44/160 (27%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 169 SEDLAAPGHPPVLRQSISFSG--LPSGRRTSPPPPG-------LAGPSLSSSSFSPSSSP 219
S L AP PP S SG L PPPP L+GP L+ S S +S+P
Sbjct: 580 SPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTP 639
Query: 220 P----------------PPGDLPLS---PSAFSAAPGTPLARRDPTPVCCPSCRRATP-- 258
PP D L+ P+A+S P PLA R P P
Sbjct: 640 EELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGS 699
Query: 259 ----ISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS 294
+++ G TP+ +L P S G + G+
Sbjct: 700 ADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGA 739
Score = 37.4 bits (85), Expect = 0.018
Identities = 79/317 (24%), Positives = 112/317 (35%), Gaps = 46/317 (14%)
Query: 18 PVPSDHGGTESSPGWGSS----GPWS-----LSPSDSSPSGVTSRLPGRSTSLVEGR--S 66
P + G SSPG S GP +S ++ G + P RS R +
Sbjct: 105 PAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDT 164
Query: 67 CGWVP--PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYG--A 122
G P P P A + G E+ +P+A P+ + + SE A
Sbjct: 165 SGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA 224
Query: 123 KCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLR 182
+ + + G G R A+R P S + AP HP +
Sbjct: 225 RRRPSAGGGLQRPASRSLS-----------SSATPLSSPARSGPSARGTPRAPAHPSQPK 273
Query: 183 QSISFSGLPSGRRTSPPPPGL-AGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLA 241
GL + R PP A P+L S SP ++P P L A P TP +
Sbjct: 274 PK----GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP--SAALQSQAPPTLPATPHS 327
Query: 242 RRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSG-SSLGGSDSPVFE 300
+C+ ATP+ + P PS+Q+L S P S +SLG SP +
Sbjct: 328 -------SSLTCQLATPLPLAPPSPS--APPSLQTLPSPPATPPSQATTSLG---SPTLQ 375
Query: 301 AGVFAPPQPVAAPRRLP 317
A P P +P P
Sbjct: 376 ATHSFLPSPPLSPLATP 392
Score = 37.4 bits (85), Expect = 0.018
Identities = 54/175 (30%), Positives = 67/175 (38%), Gaps = 34/175 (19%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSP-----PPP 222
P A P PP ++ L + PP LA P L + P+S P P
Sbjct: 490 PMSPSATP--PPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPS 547
Query: 223 GDLPLSPSAF---SAAP--GTPLARRDPTPVCCPSC----RRATP---ISVWGPLGGLV- 269
LP+SP A A P PL + P+P P+ R TP SV GP L
Sbjct: 548 ASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLAL 607
Query: 270 ---------RTPSVQSLGSDPDEYASSGSS----LGGSDSPVFEAGVFAPPQPVA 311
R+PS G D ++SS +S L G DS E G A P P A
Sbjct: 608 APGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGP-EGGAAASPPPDA 661
Score = 34.3 bits (77), Expect = 0.15
Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 174 APGHPPVLRQSISFSGLPSGRRTSP---PPPGLAGPSLSSSSFSPSSSPPP--PGDLPLS 228
+P PP L+ S P + T+ P L S SP ++PPP P L L
Sbjct: 344 SPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALP 403
Query: 229 PSAFSAAPGTPLARRDPTPVCCPSCRRATPISV---WGPLGGLVRTPSVQSLGSDPDEYA 285
P AP +P A +P+ PS + ++V P +P VQ+ S P
Sbjct: 404 P---LQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSP-PPSPPVQAPFSPPASPP 459
Query: 286 SSGSSLGGSDSPVFEAG--VFAPPQPVAAPRRLP 317
S S+ S +P A + PP P A+P P
Sbjct: 460 VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSP 493
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 193 GRRTSPPPPGLAGPSLSS--SSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCC 250
G T P AGP+ S+ SS +P+S PP G +P A + +PG PV
Sbjct: 66 GGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPG---------PVSS 116
Query: 251 PSCRRATPISVWGPLG 266
P RA+ + GPLG
Sbjct: 117 PG--RASGTTRPGPLG 130
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 44.7 bits (104), Expect = 1e-04
Identities = 68/266 (25%), Positives = 94/266 (35%), Gaps = 33/266 (12%)
Query: 15 PDVPVPSDHGGTESSPGWGS-SGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPP 73
P P P E+ P G+ + P + + PS + P S ++ R P
Sbjct: 453 PPGPAPEPEREAETEPERGAGTEPERIG---TEPSTAPAPSPPAPKSCLKHRPAAASEGP 509
Query: 74 PGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGEL 133
PLA P + P P S A + P R K E +G R + + G EL
Sbjct: 510 AASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEA-PPAGAERAAPERKAERGGAEL 568
Query: 134 RQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSIS---FSGL 190
R A K+ C P + S L PV R + GL
Sbjct: 569 RGAK---KFSVSSCR------ARPRPGVSRPLERASGRLPLARSGPVWRSEAALDDLQGL 619
Query: 191 PSGRRTSPPPPGLA--GPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPV 248
P + P P LA GP S ++SP P SP +AAPGT R+P
Sbjct: 620 PEPQHAKPGPRKLAERGP---QDSGDRAASPAGPRK---SPQEAAAAPGT----REP--- 666
Query: 249 CCPSCRRATPISVWGPLGGLVRTPSV 274
CP+ + P P +R+ S+
Sbjct: 667 -CPAAQEPAPSEDRNPFPVKLRSTSL 691
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 44.3 bits (103), Expect = 1e-04
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 191 PSGRRTSPPPPGLAG------------PSLSSSSFSPSSSPPPPGDLPLS-PSAFSAAPG 237
P + SP PPG G PS S S SP PPG+L L + + P
Sbjct: 936 PQAAQPSPAPPGARGGLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPE 995
Query: 238 TPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSP 297
TP + +P + + A+P+ + P GGL +P S G P + S+ GS
Sbjct: 996 TPPRQPEPPSLVAGASGGASPVG-FTPRGGL--SPPGHSPG-PPRTFPSAPPRASGSHGS 1051
Query: 298 VFEAGVFAPPQPVAAPRR 315
+ +PP P RR
Sbjct: 1052 LLLPPASSPPPPQVPQRR 1069
Score = 35.8 bits (81), Expect = 0.053
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 35/152 (23%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPP----- 222
P L+ PGH P G P RT P P A S S P+SSPPPP
Sbjct: 1021 PRGGLSPPGHSP---------GPP---RTFPSAPPRASGSHGSLLLPPASSPPPPQVPQR 1068
Query: 223 -GDLPLSPSAFSAAPGTPLARRDPTPV-CCPSCRRATPISVWGPLGGLVRTPSVQSLGSD 280
G PL+P + A + P + RRA+P S S +S+ +
Sbjct: 1069 RGTPPLTPGRLTQDLKLISASQPALPQDGAQTLRRASPHS------------SGESMAAF 1116
Query: 281 PDEYASSGSSLGGSDSPVFEAGVFAPPQPVAA 312
P + +G GGS S G+ P +P A
Sbjct: 1117 P-LFPRAGGGSGGSGS---SGGLGPPGRPYGA 1144
Score = 34.7 bits (78), Expect = 0.12
Identities = 67/242 (27%), Positives = 82/242 (33%), Gaps = 40/242 (16%)
Query: 17 VPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRST---SLVEGRSCGWVP-- 71
+P P SSPG P LS ++ T P R SLV G S G P
Sbjct: 959 LPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGASPVG 1018
Query: 72 -------PPPGFAPLAPRLGPELSPSPTS-------PTATSTTPSRYKTELCRTFSESGR 117
PPG +P PR P P + P A+S P + GR
Sbjct: 1019 FTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGR 1078
Query: 118 CRYGAKCQFA-------HGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
K A G LR+A+ H E F L R GS S
Sbjct: 1079 LTQDLKLISASQPALPQDGAQTLRRASPHS--SGESMAAFPLFPRAGGGSGG---SGSSG 1133
Query: 171 DLAAPGHPPVLRQSISFSGLPSGRRTS----PPPPGLAGPSLSSSSFSPSSSPP--PPGD 224
L PG P +I + R+TS PPP L G +SS P ++ P PG
Sbjct: 1134 GLGPPGRP---YGAIPGQHVTLPRKTSSGSLPPPLSLFGARATSSGGPPLTAGPQREPGA 1190
Query: 225 LP 226
P
Sbjct: 1191 RP 1192
Score = 33.1 bits (74), Expect = 0.34
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 200 PPGLAG-PSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLA 241
PPGLA P +S P++SPPPP P SA P A
Sbjct: 145 PPGLAAEPERPGASAQPAASPPPPQQPPQPASASCEQPSVDTA 187
Score = 31.6 bits (70), Expect = 1.0
Identities = 53/212 (25%), Positives = 77/212 (36%), Gaps = 55/212 (25%)
Query: 45 SSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPS-- 102
S+P+G++ LP S+S PPPG G +P+P++ A +T
Sbjct: 866 SAPAGLSPLLPSSSSS-----------PPPGAC------GSPSAPTPSAGVAATTIAGFG 908
Query: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRC 162
+ L + S S + L L+ R P+ P G+R
Sbjct: 909 HFHKALGGSLSSSD----------SPLLTPLQPGARSPQAAQP--------SPAPPGARG 950
Query: 163 ------HFIHNPSEDLAAPGHPPVLRQ-----SISFSGLPSGRRTSPP----PPGL-AGP 206
HF+ P + P L Q S+ + P +PP PP L AG
Sbjct: 951 GLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGA 1010
Query: 207 SLSSS--SFSPSSSPPPPGDLPLSPSAFSAAP 236
S +S F+P PPG P P F +AP
Sbjct: 1011 SGGASPVGFTPRGGLSPPGHSPGPPRTFPSAP 1042
>gi|40548415 dishevelled associated activator of morphogenesis 2
[Homo sapiens]
Length = 1067
Score = 44.3 bits (103), Expect = 1e-04
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 188 SGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLS----PSAFSAAPGTPLARR 243
S L +G +SPPPPG GP SSS + + PPPP LP + P PG P
Sbjct: 512 SELSTGPVSSPPPPG--GPLTLSSSMTTNDLPPPPPPLPFACCPPPPPPPLPPGGP---- 565
Query: 244 DPTPVCCPSC 253
PTP P C
Sbjct: 566 -PTPPGAPPC 574
Score = 29.6 bits (65), Expect = 3.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 208 LSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPV---CCP 251
LS S P SSPPPPG P S++ T P P+ CCP
Sbjct: 511 LSELSTGPVSSPPPPG----GPLTLSSSMTTNDLPPPPPPLPFACCP 553
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 44.3 bits (103), Expect = 1e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 10/61 (16%)
Query: 107 ELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIH 166
++C+ F E GRC G +C+F H EL + + E+C KFYLQG C G C ++H
Sbjct: 276 QICKYFLE-GRCIKGDQCKFDHD-AELEK-------RKEIC-KFYLQGYCTKGENCIYMH 325
Query: 167 N 167
N
Sbjct: 326 N 326
Score = 30.0 bits (66), Expect = 2.9
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 168 PSEDLAAP--GHPPVLRQSISFSGLPSGRRTSPPP---------PGLAGPSLSSSSFSPS 216
P+ DLA PP S S G P + +SP P PG GP++S SP
Sbjct: 436 PTVDLAHKIGRKPPAFYTSASPPG-PQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPV 493
Query: 217 SSPPPPGDLPLSPSAFSAAPGTPLARRDPTP 247
P PG P + PG P+ + P P
Sbjct: 494 MHPGSPGHHPC-----AGPPGLPVPQSPPLP 519
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 137 NRHP-KYKTELCHKFYLQGRCPYGSRCHFIHN 167
N+H ++K + K++L+GRC G +C F H+
Sbjct: 266 NQHTVEHKGKQICKYFLEGRCIKGDQCKFDHD 297
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 197 SPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRA 256
SP PP GPS S + + + P P LP+ P A S A + D +P PS
Sbjct: 681 SPDPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATAS-----DISPGASPSL--- 732
Query: 257 TPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAP 306
+S WGP G S S GS E S S G + V F P
Sbjct: 733 --LSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRP 780
Score = 35.8 bits (81), Expect = 0.053
Identities = 48/169 (28%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 169 SEDLAAPGHPPVLRQSISF---SGLPSGRRTSPPPP----GLAGPSLSSSSFSPSSSPPP 221
S L +P P SIS +G P SPP P G A P+ + F PS++P
Sbjct: 729 SPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPA--PTDFRPSATPED 786
Query: 222 PGDLPLSPSAFSAAPGT---PLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLG 278
PLSPS +A P P A P+ P P + + G V+ P++ L
Sbjct: 787 LLASPLSPSEVAAVPPADPGPEALHPTVPLDLPPA--TVPATTFPGAMGSVK-PALDWLT 843
Query: 279 SDPDEYASSGSSLGGSDSPVF-----------EAGVFAPPQPVAAPRRL 316
+ E + GG D+P F A + PP P+ P L
Sbjct: 844 REGGELPEADEWTGG-DAPAFSTSTLLSGDGDSAELEGPPAPLILPSSL 891
Score = 32.7 bits (73), Expect = 0.45
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 8 ESLLSLSPD-VPV----PSDHGGTESSPGWGSS-----GPWSLSPSDSSPSGVTSRLPGR 57
++L + +PD +PV PS ++ SPG S GPW+ S S SSP S L
Sbjct: 699 KALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEE 758
Query: 58 STSLVEGRSCGW-VPPPPGFAPLAPRLGPELSPSPTSPTATSTTP 101
+ G VP P F P A +L SP SP+ + P
Sbjct: 759 PSPPSPQNGPGTAVPAPTDFRPSA--TPEDLLASPLSPSEVAAVP 801
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 43.9 bits (102), Expect = 2e-04
Identities = 36/110 (32%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Query: 197 SPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRA 256
SP PP GPS S + + + P P LP+ P A S A + D +P PS
Sbjct: 681 SPDPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATAS-----DISPGASPSL--- 732
Query: 257 TPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAP 306
+S WGP G S S GS E S S G + V F P
Sbjct: 733 --LSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRP 780
Score = 35.8 bits (81), Expect = 0.053
Identities = 48/169 (28%), Positives = 66/169 (39%), Gaps = 27/169 (15%)
Query: 169 SEDLAAPGHPPVLRQSISF---SGLPSGRRTSPPPP----GLAGPSLSSSSFSPSSSPPP 221
S L +P P SIS +G P SPP P G A P+ + F PS++P
Sbjct: 729 SPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPA--PTDFRPSATPED 786
Query: 222 PGDLPLSPSAFSAAPGT---PLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLG 278
PLSPS +A P P A P+ P P + + G V+ P++ L
Sbjct: 787 LLASPLSPSEVAAVPPADPGPEALHPTVPLDLPPA--TVPATTFPGAMGSVK-PALDWLT 843
Query: 279 SDPDEYASSGSSLGGSDSPVF-----------EAGVFAPPQPVAAPRRL 316
+ E + GG D+P F A + PP P+ P L
Sbjct: 844 REGGELPEADEWTGG-DAPAFSTSTLLSGDGDSAELEGPPAPLILPSSL 891
Score = 32.7 bits (73), Expect = 0.45
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 8 ESLLSLSPD-VPV----PSDHGGTESSPGWGSS-----GPWSLSPSDSSPSGVTSRLPGR 57
++L + +PD +PV PS ++ SPG S GPW+ S S SSP S L
Sbjct: 699 KALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEE 758
Query: 58 STSLVEGRSCGW-VPPPPGFAPLAPRLGPELSPSPTSPTATSTTP 101
+ G VP P F P A +L SP SP+ + P
Sbjct: 759 PSPPSPQNGPGTAVPAPTDFRPSA--TPEDLLASPLSPSEVAAVP 801
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 168 PSEDLAAPGHPPVLRQSI------SFSGLPSGRRTSPPPPGLAGPSLSSSSFSP---SSS 218
P + P PPV + + G P+ P PG P + + +P S
Sbjct: 1214 PEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPK 1273
Query: 219 PPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLG 278
PPPP P +P A G P P+P PS R P ++ P G TP SLG
Sbjct: 1274 PPPP---PTAPKPVKAVAGLPSGSAGPSP--APSPARQPPAALAKPPG----TP--PSLG 1322
Query: 279 SDPDEYASSGS 289
+ P + S G+
Sbjct: 1323 ASPAKPPSPGA 1333
Score = 31.6 bits (70), Expect = 1.0
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 26/204 (12%)
Query: 26 TESSPGWGSS--GPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPR- 82
T++ PG + GP +P+ + LP + RS P GFA + P+
Sbjct: 781 TKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTERPM-SPRSLPQSPTHRGFAYVLPQP 839
Query: 83 ----LGPELSPSPTSPTATSTTPSRYKTELC---RTFSESGRCRYGAKCQFAHGLGELRQ 135
+GP +P P P + P+ LC +E GR + + AH L
Sbjct: 840 VEGEVGPA-APGPAPPPVPTAVPT-----LCLPPEADAEPGRPK-----KRAHSLNRYAA 888
Query: 136 ANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRR 195
++ P+ + EL PY + + A G + +S SF+ P +
Sbjct: 889 SDSEPE-RDEL---LVPAAAGPYATVQRRVGRSHSVRAPAGADKNVNRSQSFAVRPRKKG 944
Query: 196 TSPPPPGLAGPSLSSSSFSPSSSP 219
PPPP + +L+S++ + P
Sbjct: 945 PPPPPPKRSSSALASANLADEPVP 968
Score = 28.9 bits (63), Expect = 6.5
Identities = 48/195 (24%), Positives = 72/195 (36%), Gaps = 30/195 (15%)
Query: 71 PPPPGFAPL---APR--------LGPELSPSPTSPTATSTTPSRYKTELCRT-------- 111
PPPP P +P+ L EL + T P T + + L T
Sbjct: 634 PPPPEPTPADCQSPKMTTFQDSELSDELQAAMTGPAEVGPTTEKPSSHLPPTPRATTRQD 693
Query: 112 FSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY----GSRCHFIHN 167
S GR R+ + Q G G ++ + + L + G P G H I
Sbjct: 694 SSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPGRHGHSIKR 753
Query: 168 PSEDLAAPGHP-PVLRQSIS-FSGLPSGRRTSPPPP----GLAGPSLSSSSFSPSSSPPP 221
S PG P VL S F+ + +T P P G GP+ +++ P+ P
Sbjct: 754 ASVP-PVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLP 812
Query: 222 PGDLPLSPSAFSAAP 236
P + P+SP + +P
Sbjct: 813 PTERPMSPRSLPQSP 827
Score = 28.5 bits (62), Expect = 8.5
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 18/90 (20%)
Query: 173 AAPGHPPVLRQSISFSGLPSGRRTS----------PPPPGLAGPSLSSSSFSPSSSPP-- 220
A P PP L S+ +G + RR PPPP A P + + P PP
Sbjct: 1159 AGPEPPPPL--SVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEG 1216
Query: 221 ---PPGDLPLSPSAFSAAPGTPLARRDPTP 247
P P+SP P P + PTP
Sbjct: 1217 EARKPAKPPVSPKPVLTQP-VPKLQGSPTP 1245
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 188 SGLPSGRRTSPPPPGLAGPSLSSSSFSP--SSSPPPPGDLPLSPSAFSAAPGTPLARRDP 245
S P +PP P P+ SSS P +++PP P +P + SA P T A P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA--PP 216
Query: 246 TPVC---CPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAG 302
TP P A P + P TP+ S + P+ A + + P +
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP---SS 273
Query: 303 VFAPPQPVAAP 313
APP+ AAP
Sbjct: 274 ASAPPETTAAP 284
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL 227
P E AAP P Q+ S P +PP P P+ SSS P ++ PP
Sbjct: 185 PPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSAT 244
Query: 228 SPSAFSAAPGTPLARRDPTPVCC---PSCRRATPISVWGPLGGLVRTPSVQS 276
+P+ S++ PTP PS A P + P TP+ S
Sbjct: 245 TPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Score = 42.0 bits (97), Expect = 7e-04
Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGL---AGPSLSSSSFSPSSSPPPPGD 224
P + AAP P + S P +PP P A PS S+ + ++ P PP
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
Query: 225 LPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY 284
P PS+ SA P T A PT PS P+S P P+ + DP
Sbjct: 222 TPAPPSS-SAPPETTAA--PPT----PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA 274
Query: 285 ASSGSSLGGSDSPVFEAGVFAPPQPVA 311
++ + +P A APP A
Sbjct: 275 SAPPETTAAPPTP--SATTPAPPSSPA 299
Score = 38.9 bits (89), Expect = 0.006
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSP------------ 215
P E AAP PP + S P +PP P P+ SSS P
Sbjct: 208 PPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSAT 267
Query: 216 ------SSSPPPPGDLPLSPSAFSAAPGTPLARRDPT--PVCCPSCRRAT 257
+S+PP P +PSA + AP + A ++ T P+ P+ T
Sbjct: 268 TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Score = 33.9 bits (76), Expect = 0.20
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 9 SLLSLSP-DVPVPSDHGGTESSPGWGSSGPWSLSPSDSSP---------SGVTSRLPGRS 58
S+ +L+P + P P D +P + P PS S+P T++ P S
Sbjct: 150 SVATLAPVNSPAPQDTTAAPPTPSATTPAP----PSSSAPPETTAAPPTPSATTQAPPSS 205
Query: 59 TSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTP 101
++ E + PP AP + PE + +P +P+AT+ P
Sbjct: 206 SAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Score = 32.7 bits (73), Expect = 0.45
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 15 PDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPP 74
P P + + S+P ++ P +PS ++P+ ++S P +T+ VPP P
Sbjct: 216 PTPPATTPAPPSSSAPPETTAAP--PTPSATTPAPLSSSAPPETTA---------VPPTP 264
Query: 75 GFAPLAPRLG---PELSPSPTSPTATSTTP 101
L P PE + +P +P+AT+ P
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAP 294
Score = 31.2 bits (69), Expect = 1.3
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 196 TSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC---CPS 252
TS LA + + + ++ P P P PS+ SA P T A PTP P
Sbjct: 147 TSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSS-SAPPETTAA--PPTPSATTQAPP 203
Query: 253 CRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAA 312
A P + P TP+ S + P+ A+ + + +P+ + APP+ A
Sbjct: 204 SSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSS---APPETTAV 260
Query: 313 P 313
P
Sbjct: 261 P 261
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 18 PVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFA 77
P PS T +P S+ P + + + P+ T+ P S++ E + P A
Sbjct: 193 PTPS---ATTQAPPSSSAPPETTAAPPTPPA--TTPAPPSSSAPPETTAAPPTPSATTPA 247
Query: 78 PLAPRLGPELSPSPTSPTATSTTPS 102
PL+ PE + P +P+AT+ PS
Sbjct: 248 PLSSSAPPETTAVPPTPSATTLDPS 272
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 3e-04
Identities = 90/349 (25%), Positives = 120/349 (34%), Gaps = 53/349 (15%)
Query: 9 SLLSLSPDVPVPS---DHGGTESS--PGWGSSGPWSLS--PSDSSPSGVTSRLPGRSTSL 61
SL S SP P+ S T+SS P + P SL+ P ++ PS L S L
Sbjct: 494 SLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAPL 553
Query: 62 VEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSE------- 114
PP P PL P +P P +P++ +T P + L +
Sbjct: 554 TTPHL--ETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPL 611
Query: 115 SGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAA 174
S + L L QA P L + P H + P +
Sbjct: 612 SPLATPPPQAPPXLALPPL-QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP---FSP 667
Query: 175 PGHPPVLRQSISFSGLPSGRRTSPP---PPGLAGPSL-------SSSSFSPSSSPP---- 220
P PPV + P +PP PP LA P L +S SPS++PP
Sbjct: 668 PPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 221 -------------PPGDLPLSPSAFSAAPGTPLARRDP--TPVCCPSCRRATPISVWGPL 265
PP P+SPSA PL P P P+ +P++ P
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ 787
Query: 266 G-GLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
+ TP +Q+L S P AS S S A P P A P
Sbjct: 788 APPALATPPLQALPSPP---ASFPGQAPFSPSASLPMSPLATPPPQAPP 833
Score = 40.8 bits (94), Expect = 0.002
Identities = 69/288 (23%), Positives = 95/288 (32%), Gaps = 53/288 (18%)
Query: 41 SPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTT 100
SP S P ++ P R L+ P PP P++P P P +P A +T
Sbjct: 740 SPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLA----KPPPQAPPALATP 795
Query: 101 PSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGS 160
P + +F G+ + L A P+ L P S
Sbjct: 796 PLQALPSPPASFP--GQAPFSPSAS----LPMSPLATPPPQAPPVLAAPLLQVPPSPPAS 849
Query: 161 RCHFIHNPSEDLAAPGHPPVLRQSISFSG--LPSGRRTSPPPPG-------LAGPSLSSS 211
L AP PP S SG L PPPP L+GP L+
Sbjct: 850 ---------PTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGH 900
Query: 212 SFSPSSSPP----------------PPGDLPLS---PSAFSAAPGTPLARRDPTPVCCPS 252
S S +S+P PP D L+ P+A+S P PLA R P
Sbjct: 901 SSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPW 960
Query: 253 CRRATP------ISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGS 294
P +++ G TP+ +L P S G + G+
Sbjct: 961 PPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGA 1008
Score = 38.5 bits (88), Expect = 0.008
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 197 SPPPPGLAGPSLSSSSFSPSSSPP----PPGDLPLSPSAFSAAPGTPLARRDPTPVCCPS 252
SPP GL P LS + P +PP PP P SP A + P +PLA TP P
Sbjct: 600 SPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPA--SPPLSPLA----TP--SPQ 651
Query: 253 CRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAG--VFAPPQPV 310
A + + +P VQ+ S P S S+ S +P A + PP P
Sbjct: 652 APNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPP 711
Query: 311 AAPRRLP 317
A+P P
Sbjct: 712 ASPPMSP 718
Score = 37.7 bits (86), Expect = 0.014
Identities = 53/174 (30%), Positives = 62/174 (35%), Gaps = 43/174 (24%)
Query: 172 LAAPGHPPVLRQSISFSGLPSGRRTSPPP---PGLAGPSLSSSSFSPSSSP-----PPPG 223
L P PP + LP PPP P LA P L + P+S P P
Sbjct: 766 LQVPPSPP--------ASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSA 817
Query: 224 DLPLSPSAFS--------------------AAPGTPLARRDPT--PVCCPSCRRATPISV 261
LP+SP A A+P RR PT P S R T
Sbjct: 818 SLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALA 877
Query: 262 WGPLGGLVRTPSVQSLGSDPDEYASSGSS----LGGSDSPVFEAGVFAPPQPVA 311
GP R+PS G D ++SS +S L G DS E G A P P A
Sbjct: 878 PGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGP-EGGAAASPPPDA 930
Score = 33.9 bits (76), Expect = 0.20
Identities = 76/318 (23%), Positives = 111/318 (34%), Gaps = 52/318 (16%)
Query: 18 PVPSDHGGTESSPGWGSS----GPWS-----LSPSDSSPSGVTSRLPGRSTSLVEGR--S 66
P + G SSPG S GP +S ++ G + P RS R +
Sbjct: 105 PAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDT 164
Query: 67 CGWVP--PPPGFAPLAPRLGPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYG--A 122
G P P P A + G E+ +P+A P+ + + SE A
Sbjct: 165 SGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA 224
Query: 123 KCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLR 182
+ + + G G R A+R P S + AP HP +
Sbjct: 225 RRRPSAGGGLQRPASRSLS-----------SSATPLSSPARSGPSARGTPRAPAHPSQPK 273
Query: 183 QSISFSGLPSGRRTSPPPPGL-AGPSLSSSSFSPSSSPPPPGD--LPLSPSAFSAAP--- 236
GL + R PP A P+L S SP ++P P G P+ P +A P
Sbjct: 274 PK----GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPA 329
Query: 237 --------GTPLARRDPTPVCCPSCRR-----ATPISVWGP---LGGLVRTPSVQSLGSD 280
TPL P+P PS + ATP S P + PS+Q++
Sbjct: 330 TLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPI 389
Query: 281 PDEYASSGSSLGGSDSPV 298
++ + SL SP+
Sbjct: 390 QVPHSLTSPSLQAPPSPL 407
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 193 GRRTSPPPPGLAGPSLSS--SSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCC 250
G T P AGP+ S+ SS +P+S PP G +P A + +PG PV
Sbjct: 66 GGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPG---------PVSS 116
Query: 251 PSCRRATPISVWGPLG 266
P RA+ + GPLG
Sbjct: 117 PG--RASGTTRPGPLG 130
Score = 30.4 bits (67), Expect = 2.2
Identities = 43/160 (26%), Positives = 53/160 (33%), Gaps = 21/160 (13%)
Query: 173 AAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAF 232
+A PP S S T P P PS P+S PLS A
Sbjct: 195 SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPAR 254
Query: 233 S--AAPGTPLARRDPT------------PVCCPSCRRATPISVWGPLGGL-VRTPSVQSL 277
S +A GTP A P+ P P + A P GPL + TPS
Sbjct: 255 SGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAP--ALGPLSSSPLATPSPSGT 312
Query: 278 GS----DPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAP 313
+ PD A+ + P+ APP P A P
Sbjct: 313 KARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPP 352
Score = 28.5 bits (62), Expect = 8.5
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 17/147 (11%)
Query: 168 PSEDLAAPGH--PPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDL 225
PS LA P PP S LPS T PP A PS+++ P +PP +
Sbjct: 333 PSPPLATPLPLAPPSPSAPPSLQTLPSPPAT---PPSQAPPSMTTP---PMQAPPSLQTI 386
Query: 226 PLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYA 285
P P + +P + P+P+ S + T S+ P L T S ++ + +
Sbjct: 387 P--PIQVPHSLTSPSLQAPPSPLALSSLQATT--SLGSPT--LQATHSFLTMSPRQTQAS 440
Query: 286 SSGSSLGGS---DSPVFEAGVFAPPQP 309
+ S S DSP +A + P P
Sbjct: 441 LTSPSRPASTPPDSPPLQAPLSLPASP 467
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 188 SGLPSGRRTSPPPPGLAGPSLSSSSFSP--SSSPPPPGDLPLSPSAFSAAPGTPLARRDP 245
S P +PP P P+ SSS P +++PP P +P + SA P T A P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA--PP 216
Query: 246 TPVC---CPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAG 302
TP P A P + P TP+ S + P+ A + + P +
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP---SS 273
Query: 303 VFAPPQPVAAP 313
APP+ AAP
Sbjct: 274 ASAPPETTAAP 284
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL 227
P E AAP P Q+ S P +PP P P+ SSS P ++ PP
Sbjct: 185 PPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSAT 244
Query: 228 SPSAFSAAPGTPLARRDPTPVCC---PSCRRATPISVWGPLGGLVRTPSVQS 276
+P+ S++ PTP PS A P + P TP+ S
Sbjct: 245 TPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Score = 42.0 bits (97), Expect = 7e-04
Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGL---AGPSLSSSSFSPSSSPPPPGD 224
P + AAP P + S P +PP P A PS S+ + ++ P PP
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
Query: 225 LPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY 284
P PS+ SA P T A PT PS P+S P P+ + DP
Sbjct: 222 TPAPPSS-SAPPETTAA--PPT----PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA 274
Query: 285 ASSGSSLGGSDSPVFEAGVFAPPQPVA 311
++ + +P A APP A
Sbjct: 275 SAPPETTAAPPTP--SATTPAPPSSPA 299
Score = 38.9 bits (89), Expect = 0.006
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSP------------ 215
P E AAP PP + S P +PP P P+ SSS P
Sbjct: 208 PPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSAT 267
Query: 216 ------SSSPPPPGDLPLSPSAFSAAPGTPLARRDPT--PVCCPSCRRAT 257
+S+PP P +PSA + AP + A ++ T P+ P+ T
Sbjct: 268 TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Score = 33.9 bits (76), Expect = 0.20
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 9 SLLSLSP-DVPVPSDHGGTESSPGWGSSGPWSLSPSDSSP---------SGVTSRLPGRS 58
S+ +L+P + P P D +P + P PS S+P T++ P S
Sbjct: 150 SVATLAPVNSPAPQDTTAAPPTPSATTPAP----PSSSAPPETTAAPPTPSATTQAPPSS 205
Query: 59 TSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTP 101
++ E + PP AP + PE + +P +P+AT+ P
Sbjct: 206 SAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Score = 32.7 bits (73), Expect = 0.45
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 15 PDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPP 74
P P + + S+P ++ P +PS ++P+ ++S P +T+ VPP P
Sbjct: 216 PTPPATTPAPPSSSAPPETTAAP--PTPSATTPAPLSSSAPPETTA---------VPPTP 264
Query: 75 GFAPLAPRLG---PELSPSPTSPTATSTTP 101
L P PE + +P +P+AT+ P
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAP 294
Score = 31.2 bits (69), Expect = 1.3
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 196 TSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC---CPS 252
TS LA + + + ++ P P P PS+ SA P T A PTP P
Sbjct: 147 TSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSS-SAPPETTAA--PPTPSATTQAPP 203
Query: 253 CRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAA 312
A P + P TP+ S + P+ A+ + + +P+ + APP+ A
Sbjct: 204 SSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSS---APPETTAV 260
Query: 313 P 313
P
Sbjct: 261 P 261
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 18 PVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFA 77
P PS T +P S+ P + + + P+ T+ P S++ E + P A
Sbjct: 193 PTPS---ATTQAPPSSSAPPETTAAPPTPPA--TTPAPPSSSAPPETTAAPPTPSATTPA 247
Query: 78 PLAPRLGPELSPSPTSPTATSTTPS 102
PL+ PE + P +P+AT+ PS
Sbjct: 248 PLSSSAPPETTAVPPTPSATTLDPS 272
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 188 SGLPSGRRTSPPPPGLAGPSLSSSSFSP--SSSPPPPGDLPLSPSAFSAAPGTPLARRDP 245
S P +PP P P+ SSS P +++PP P +P + SA P T A P
Sbjct: 159 SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA--PP 216
Query: 246 TPVC---CPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAG 302
TP P A P + P TP+ S + P+ A + + P +
Sbjct: 217 TPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP---SS 273
Query: 303 VFAPPQPVAAP 313
APP+ AAP
Sbjct: 274 ASAPPETTAAP 284
Score = 43.5 bits (101), Expect = 3e-04
Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPL 227
P E AAP P Q+ S P +PP P P+ SSS P ++ PP
Sbjct: 185 PPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSAT 244
Query: 228 SPSAFSAAPGTPLARRDPTPVCC---PSCRRATPISVWGPLGGLVRTPSVQS 276
+P+ S++ PTP PS A P + P TP+ S
Sbjct: 245 TPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Score = 42.0 bits (97), Expect = 7e-04
Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGL---AGPSLSSSSFSPSSSPPPPGD 224
P + AAP P + S P +PP P A PS S+ + ++ P PP
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPAT 221
Query: 225 LPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEY 284
P PS+ SA P T A PT PS P+S P P+ + DP
Sbjct: 222 TPAPPSS-SAPPETTAA--PPT----PSATTPAPLSSSAPPETTAVPPTPSATTLDPSSA 274
Query: 285 ASSGSSLGGSDSPVFEAGVFAPPQPVA 311
++ + +P A APP A
Sbjct: 275 SAPPETTAAPPTP--SATTPAPPSSPA 299
Score = 38.9 bits (89), Expect = 0.006
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 20/110 (18%)
Query: 168 PSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSP------------ 215
P E AAP PP + S P +PP P P+ SSS P
Sbjct: 208 PPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSAT 267
Query: 216 ------SSSPPPPGDLPLSPSAFSAAPGTPLARRDPT--PVCCPSCRRAT 257
+S+PP P +PSA + AP + A ++ T P+ P+ T
Sbjct: 268 TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Score = 33.9 bits (76), Expect = 0.20
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 9 SLLSLSP-DVPVPSDHGGTESSPGWGSSGPWSLSPSDSSP---------SGVTSRLPGRS 58
S+ +L+P + P P D +P + P PS S+P T++ P S
Sbjct: 150 SVATLAPVNSPAPQDTTAAPPTPSATTPAP----PSSSAPPETTAAPPTPSATTQAPPSS 205
Query: 59 TSLVEGRSCGWVPPPPGFAPLAPRLGPELSPSPTSPTATSTTP 101
++ E + PP AP + PE + +P +P+AT+ P
Sbjct: 206 SAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Score = 32.7 bits (73), Expect = 0.45
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 15 PDVPVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPP 74
P P + + S+P ++ P +PS ++P+ ++S P +T+ VPP P
Sbjct: 216 PTPPATTPAPPSSSAPPETTAAP--PTPSATTPAPLSSSAPPETTA---------VPPTP 264
Query: 75 GFAPLAPRLG---PELSPSPTSPTATSTTP 101
L P PE + +P +P+AT+ P
Sbjct: 265 SATTLDPSSASAPPETTAAPPTPSATTPAP 294
Score = 31.2 bits (69), Expect = 1.3
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 196 TSPPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVC---CPS 252
TS LA + + + ++ P P P PS+ SA P T A PTP P
Sbjct: 147 TSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSS-SAPPETTAA--PPTPSATTQAPP 203
Query: 253 CRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAA 312
A P + P TP+ S + P+ A+ + + +P+ + APP+ A
Sbjct: 204 SSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSS---APPETTAV 260
Query: 313 P 313
P
Sbjct: 261 P 261
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 18 PVPSDHGGTESSPGWGSSGPWSLSPSDSSPSGVTSRLPGRSTSLVEGRSCGWVPPPPGFA 77
P PS T +P S+ P + + + P+ T+ P S++ E + P A
Sbjct: 193 PTPS---ATTQAPPSSSAPPETTAAPPTPPA--TTPAPPSSSAPPETTAAPPTPSATTPA 247
Query: 78 PLAPRLGPELSPSPTSPTATSTTPS 102
PL+ PE + P +P+AT+ PS
Sbjct: 248 PLSSSAPPETTAVPPTPSATTLDPS 272
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/223 (24%), Positives = 77/223 (34%), Gaps = 21/223 (9%)
Query: 102 SRYKTELCRTFSESGRCRYGAKCQFAHGLGEL---RQANRHPKYKTELCHKFYLQGRCPY 158
S+YKT +CR + G C GA C FAH EL R+ N+ + L
Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGL 471
Query: 159 GSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSS------- 211
S + DL + PP L I + +G + P PS SS
Sbjct: 472 PSAAILPDEGAVDLPS-RKPPALPNGI----VSTGNTVTQLIPRGTDPSYDSSLKPGKID 526
Query: 212 SFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRT 271
S S+ PP L P + SA P P + P P P+ V PL + R
Sbjct: 527 HLSSSAPGSPPDLLESVPKSISALPVNPHSIPPRGPADLP------PMPVTKPLQMVPRG 580
Query: 272 PSVQSLGSDPDEYASSGSSLGGSDSPVFEAGVFAPPQPVAAPR 314
+ Y + + ++ G++ P P R
Sbjct: 581 SQLYPAQQTDVYYQDPRGAAPPFEPAPYQQGMYYTPPPQCVSR 623
Score = 39.7 bits (91), Expect = 0.004
Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 25/131 (19%)
Query: 134 RQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPS--EDLAAPGHPPVLRQSISFS--- 188
+Q +H KYKT +C +G CP G+ C F H+ E V R+ +S S
Sbjct: 406 QQPPQHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQ 465
Query: 189 ----GLPSGR---------RTSPPPPGLAGPSLSSSSFSPSSSP---PPPGDLPLSPSAF 232
GLPS S PP L +S+ + P P D L P
Sbjct: 466 LNEVGLPSAAILPDEGAVDLPSRKPPALPNGIVSTGNTVTQLIPRGTDPSYDSSLKPGKI 525
Query: 233 ----SAAPGTP 239
S+APG+P
Sbjct: 526 DHLSSSAPGSP 536
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,483,277
Number of Sequences: 37866
Number of extensions: 1407171
Number of successful extensions: 15910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 1067
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 6070
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.