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Search of human proteins with 4507555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507555 thymopoietin isoform alpha [Homo sapiens]
(694 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507555 thymopoietin isoform alpha [Homo sapiens] 1362 0.0
gi|73760401 thymopoietin isoform gamma [Homo sapiens] 378 e-104
gi|73760405 thymopoietin isoform beta [Homo sapiens] 378 e-104
gi|56676324 LEM domain containing 1 [Homo sapiens] 49 2e-05
gi|7706607 LEM domain containing 3 [Homo sapiens] 49 2e-05
gi|4557553 emerin [Homo sapiens] 43 9e-04
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 42 0.001
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 42 0.003
gi|21735569 claspin [Homo sapiens] 40 0.010
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.012
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 39 0.016
gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo sa... 39 0.021
gi|62899065 centrosomal protein 72 kDa [Homo sapiens] 38 0.036
gi|5802992 cyclin I [Homo sapiens] 38 0.036
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 38 0.036
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 37 0.047
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 37 0.047
gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo sap... 36 0.14
gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo sap... 36 0.14
gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo sapi... 36 0.14
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 35 0.18
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 35 0.18
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 35 0.18
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 35 0.18
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 35 0.31
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 35 0.31
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.31
gi|61102725 la related protein isoform 2 [Homo sapiens] 35 0.31
gi|39725634 la related protein isoform 1 [Homo sapiens] 35 0.31
gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens] 35 0.31
>gi|4507555 thymopoietin isoform alpha [Homo sapiens]
Length = 694
Score = 1362 bits (3525), Expect = 0.0
Identities = 694/694 (100%), Positives = 694/694 (100%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQA 240
DRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQA
Sbjct: 181 DRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQA 240
Query: 241 AKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEH 300
AKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEH
Sbjct: 241 AKKVHTSKGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEH 300
Query: 301 SAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKAL 360
SAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKAL
Sbjct: 301 SAMLVSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKAL 360
Query: 361 EESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQET 420
EESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQET
Sbjct: 361 EESESSQLISPPLAQAIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQET 420
Query: 421 EFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQS 480
EFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQS
Sbjct: 421 EFLSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHSLTTLGLEVAKQS 480
Query: 481 QHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEI 540
QHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEI
Sbjct: 481 QHDKIDASELSFPFHESILKVIEEEWQQVDRQLPSLACKYPVSSREATQILSVPKVDDEI 540
Query: 541 LGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISQA 600
LGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISQA
Sbjct: 541 LGFISEATPLGGIQAASTESCNQQLDLALCRAYEAAASALQIATHTAFVAKAMQADISQA 600
Query: 601 AQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKI 660
AQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKI
Sbjct: 601 AQILSSDPSRTHQALGILSKTYDAASYICEAAFDEVKMAAHTMGNATVGRRYLWLKDCKI 660
Query: 661 NLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH 694
NLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH
Sbjct: 661 NLASKNKLASTPFKGGTLFGGEVCKVIKKRGNKH 694
>gi|73760401 thymopoietin isoform gamma [Homo sapiens]
Length = 345
Score = 378 bits (970), Expect = e-104
Identities = 192/198 (96%), Positives = 192/198 (96%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEGKKKEHKKVK 198
DRYSDNEE K E K K
Sbjct: 181 DRYSDNEEDSKIELKLEK 198
>gi|73760405 thymopoietin isoform beta [Homo sapiens]
Length = 454
Score = 378 bits (970), Expect = e-104
Identities = 192/198 (96%), Positives = 192/198 (96%)
Query: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
Sbjct: 1 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK 60
Query: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
Sbjct: 61 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL 120
Query: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
Sbjct: 121 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS 180
Query: 181 DRYSDNEEGKKKEHKKVK 198
DRYSDNEE K E K K
Sbjct: 181 DRYSDNEEDSKIELKLEK 198
>gi|56676324 LEM domain containing 1 [Homo sapiens]
Length = 108
Score = 48.9 bits (115), Expect = 2e-05
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 110 LDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSA 169
+DV L++ L +QL K G +PGPI+ +TRKLYEKKL++L +S
Sbjct: 2 VDVKCLSDCKLQNQLEKLGFSPGPILPSTRKLYEKKLVQL--------------LVSPPC 47
Query: 170 ENTRQNGSNDSD--RYSDNEEGKKKEHKKVKSTRDIVPFSE 208
NG + D + SD+ EG +EH+ +S + P E
Sbjct: 48 APPVMNGPRELDGAQDSDDSEGGLQEHQAPESHMGLSPKRE 88
>gi|7706607 LEM domain containing 3 [Homo sapiens]
Length = 911
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
+L++E+L QL +YG++PGP+ +TR +Y KKL KLRE+ + S TR
Sbjct: 11 QLSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQHRS------GGRGNKTR 64
Query: 174 QNGSNDS 180
+ +N++
Sbjct: 65 NSNNNNT 71
>gi|4557553 emerin [Homo sapiens]
Length = 254
Score = 43.1 bits (100), Expect = 9e-04
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 114 ELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTR 173
+L++ +L L +Y + GP+VG+TR+LYEKK+ + Q R S P + +SS +
Sbjct: 6 DLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQ--RRRLSPPSSSAASSYSFSD 63
Query: 174 QNGS-NDSDRY 183
N + D+D Y
Sbjct: 64 LNSTRGDADMY 74
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 42.4 bits (98), Expect = 0.001
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 23/159 (14%)
Query: 63 PDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLL- 121
PD S E+ P LG G + + + R K+TD Q+D D L+ + + LL
Sbjct: 78 PDMISKLEKGEAPWLGKGKRPSQGCPSKIARPKQKETDGKVQKDDDQLENIQKSQNKLLR 137
Query: 122 -------DQLVKYGVNPGPIVGTTRKLY------EKKLLKLREQGTESRSSTPLPTISSS 168
Q K G + G + G L+ +K+LLK G + + LP S +
Sbjct: 138 EVAVKKKTQAKKNGSDCGSL-GKKNNLHKKHVPSKKRLLKFESCGKILKQNLDLPDHSRN 196
Query: 169 AENTRQNGSNDSDR-----YSDNEEGKK---KEHKKVKS 199
+ + + + + SD +GKK K+H+K+ S
Sbjct: 197 CVKRKSDAAKEHKKSFNHSLSDTRKGKKQTGKKHEKLSS 235
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 41.6 bits (96), Expect = 0.003
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 15/154 (9%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
PPLP G R +GS + RSR+ GR + K+ K R++ +
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159
Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
+ Q K PG + + E+ K R + T S SS+ + SSS+
Sbjct: 160 SAST-------SQGRKASTAPGAEASPSPCITERSKQKARRR-TRSSSSSSSSSSSSSSS 211
Query: 171 NTRQNGSNDSD------RYSDNEEGKKKEHKKVK 198
++ + S+ SD +Y D KKK+ KK+K
Sbjct: 212 SSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 245
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 39.7 bits (91), Expect = 0.010
Identities = 95/419 (22%), Positives = 157/419 (37%), Gaps = 69/419 (16%)
Query: 40 LYLQHLTARNRPPLPAGTNSKGPPDFSSDEEREPTPV---LGSGAAAAGRSRAAVGRKAT 96
LY ++L A+ +P L S DF++D + + G+ A +S+ + K
Sbjct: 119 LYQENLEAQVKPCLELSLQSGNSTDFTTDRKSSKKHIHDKEGTAGKAKVKSKRRL-EKEE 177
Query: 97 KKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTES 156
+K +K RQ K + ED ++Q P + L +K L E G E
Sbjct: 178 RKMEKIRQLKKKETK----NQEDDVEQ---------PFNDSGCLLVDKDLF---ETGLED 221
Query: 157 RSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGG 216
+++PL S E+ R N K K+HKK + P E G
Sbjct: 222 ENNSPLED-EESLESIRAAVKN-----------KVKKHKKKE------PSLESGV----H 259
Query: 217 GFFQGISFPEISTRPPLGSTEL--QAAKKVHTSKGDLPREPLVATNLPGRGQLQKLASER 274
F +G + +TR + L +A K++H+ L RE A NLP K +
Sbjct: 260 SFEEGSELSKGTTRKERKAARLSKEALKQLHSETQRLIRES--ALNLPYHMPENKTIHDF 317
Query: 275 NLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLI-------KETTTGYYKDIVE 327
+ H + SS Q H ++ TA + + E TTG ++
Sbjct: 318 FKRKPRPTCHGNAMALLKSSKYQSSHHKEIIDTANTTEMNSDHHSKGSEQTTGAENEVET 377
Query: 328 N-----------ICGREKSGIQPLCP-ERSHISDQSPLSSKRKALEESESSQLISPPLAQ 375
N I G ++S + L E I ++ S R + +S Q S L
Sbjct: 378 NALPVVSKETQIITGSDESCRKDLVKNEELEIQEKQKQSDIRPSPGDSSVLQQESNFLG- 436
Query: 376 AIRDYVNSLLVQGGVGSLPGTSNSMPPLDVENIQKRIDQSKFQ-ETEFLSPPRKVPRLS 433
++ V G V P P + E +++++ + Q ++ + PP KV R +
Sbjct: 437 --NNHSEECQVGGLVAFEPHALEGEGPQNPEETDEKVEEPEQQNKSSAVGPPEKVRRFT 493
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.3 bits (90), Expect = 0.012
Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 45/259 (17%)
Query: 143 EKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS----DRYSDNEEGKKKEHKKVK 198
+KK K +++G S SS+P S++ + ++S R + +K + KK K
Sbjct: 187 QKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRK 246
Query: 199 STRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTS----------- 247
+R P P + S S+ S AA K HT+
Sbjct: 247 RSRSTTP------APKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
Query: 248 ----KGDLPREPLVATNLPGRGQLQKLASERNLFISCKSSH-DRCLEKSSSSSSQPEHSA 302
+GD P + PG Q+ +S S + D+ +K S+++P S
Sbjct: 301 GRRGEGDAP------FSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSP 354
Query: 303 MLVSTAASP----SLIKETTTGYYKDIVENICGREKSGIQPLCP--ERSHISDQSPLSSK 356
ST P L+ E G + + +E P+ P E S D+SP S
Sbjct: 355 ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQE-----PVNPPSEASPTRDRSPPKSP 409
Query: 357 RKALEESESSQLISPPLAQ 375
K L +S SS+ SPP Q
Sbjct: 410 EK-LPQSSSSE-SSPPSPQ 426
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 38.9 bits (89), Expect = 0.016
Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 25/172 (14%)
Query: 118 EDLLDQLVKYGVNPGPIVGTTR------------KLYEKKLLKLREQGTESRSSTPLPTI 165
E L++ + KYGV + + K+ K LR + +R S +
Sbjct: 462 EQLIELIEKYGVGHWAKIASELPHRSGSQCLSKWKIMMGKKQGLRRRRRRARHSVRWSST 521
Query: 166 SSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDI-------------VPFSELGTT 212
SSS ++ +G + S S +EE + ++ + + R + VP + +
Sbjct: 522 SSSGSSSGSSGGSSSSSSSSSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPARQSTSQ 581
Query: 213 PSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGR 264
P GG + P S PP GS+ Q K ++ P E +P R
Sbjct: 582 PWRGGAGAWLGGPAASLSPPKGSSASQGGSKEASTTAAAPGEETSPVQVPAR 633
>gi|148664230 ankyrin repeat and LEM domain containing 2 [Homo
sapiens]
Length = 938
Score = 38.5 bits (88), Expect = 0.021
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 115 LTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLK-LREQG 153
L +DL +++VK G+ GPI TTR ++EKKL + L EQG
Sbjct: 75 LNPDDLREEIVKAGLKCGPITSTTRFIFEKKLAQALLEQG 114
>gi|62899065 centrosomal protein 72 kDa [Homo sapiens]
Length = 647
Score = 37.7 bits (86), Expect = 0.036
Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 38/242 (15%)
Query: 341 CPERSHISDQSPLSSKRKALEESESSQLISPPLAQAIRDYVNSLLVQ------GGVGSLP 394
CPER+H S S R+ ES + + +S P A + + + G +LP
Sbjct: 353 CPERTHGSSVPKESLSRQDSSESRNGRTLSQPEASETEEQRSRGVTDTREPSPGSHSALP 412
Query: 395 GTSNSMPPLDVENIQKRID------QSKFQETEFLSPPRKVPRLSEKSVEERDSGSFVAF 448
G ++ +E + +D +S FL+ R + E+ +DS + V
Sbjct: 413 GKKTALQAALLETLLDLVDRSWGGCRSLHSNEAFLAQARHILSSVEEFTAAQDSSAMV-- 470
Query: 449 QNIPGSELMSSFAKTVVSHSLTTLGLEVAKQSQHDKIDASELSFPFHESILKVIEEEWQQ 508
E + S A + S SL + +A+Q Q + SE++ H + K +++ Q
Sbjct: 471 -----GEDVGSLA--LESKSLQS---RLAEQQQQHAREMSEVTAELHHT-HKELDDLRQH 519
Query: 509 VDRQLPSLACKYPVSSREATQILSVPKVDDEILGFISEAT---PLGGIQAASTESCNQQL 565
+D+ L +SR + +LS+ K E+ + AT + G+Q + C + +
Sbjct: 520 LDKSLEE-------NSRLKSLLLSMKK---EVKSADTAATLNLQIAGLQTSVKRLCGEIV 569
Query: 566 DL 567
+L
Sbjct: 570 EL 571
>gi|5802992 cyclin I [Homo sapiens]
Length = 377
Score = 37.7 bits (86), Expect = 0.036
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 19 ELVANNV-TLPAGEQRKDVYVQLYLQH-LTARNRPPLPAGTNSKGPPDFSSDEEREPTPV 76
ELVA+++ TL + VYV L+H L ++ +S PDFS D + PV
Sbjct: 241 ELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPV 300
Query: 77 LGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL--DVTELTNEDLLDQLVKYGVNPGPI 134
G+ AA AA G K T K + + DD + L NED + + N G +
Sbjct: 301 RGT-AAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSE------NVGSV 353
Query: 135 VGT 137
GT
Sbjct: 354 CGT 356
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 37.7 bits (86), Expect = 0.036
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 29/233 (12%)
Query: 43 QHLTARNRPPLPAGTNSKGPPDFSSDEERE--PTPVL-GSGAAAAGRSRAAVGRKATKKT 99
+HL + +P G + S RE PV G+G + S +V + + +T
Sbjct: 273 KHLALSSSKSMPGERIKAGSGNSSQPSLREGHDKPVFNGAGKPHSSTSSPSVPKTSASRT 332
Query: 100 DKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSS 159
K E K ++ ++ PGP+V K K +R+ G+ S S+
Sbjct: 333 QKSAVEHKAKKSLSHPSHS-----------RPGPMVTPHNKA---KSPGVRQPGSSSSSA 378
Query: 160 -------TPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELG-T 211
PT+SS RQNGS+ S KK + S R + G
Sbjct: 379 PGQPSTGVARPTVSSGPVPRRQNGSSSSGPERSISGSKKPTNDSNPSRRTVSGTCGPGQP 438
Query: 212 TPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGR 264
S GG + IS +S+ PLGS+ + + +S +L R P+ PGR
Sbjct: 439 ASSSGGPGRPIS-GSVSSARPLGSS--RGPGRPVSSPHEL-RRPVSGLGPPGR 487
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 37.4 bits (85), Expect = 0.047
Identities = 87/401 (21%), Positives = 158/401 (39%), Gaps = 39/401 (9%)
Query: 133 PIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKK 192
P+ K+ +KK R++ ES S++ + +SS ++ S+DSD ++EE +
Sbjct: 221 PLDARVDKIKDKKP---RKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEE---E 274
Query: 193 EHKKVKSTRDIVPFSELGTTPSGGG--FFQGISFPEISTRPPLGSTELQAAKKVHTSKGD 250
E + ++ + D SE GIS P+ + +TE K++H
Sbjct: 275 EDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKADGQK---ATEKAQEKRIHQ---P 328
Query: 251 LPREPLVATNLPGRGQLQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAAS 310
LP T+ Q Q + L +SS + E+S + + S LVS
Sbjct: 329 LPLASESQTHSFQSQQKQPQVLSQQLPFIFQSSQAK--EESVNKHTSVIQSTGLVSNVKP 386
Query: 311 PSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRKALEESESSQLIS 370
SL+ + Y ++ K+G + E S ++ S L SKR+ +++ SQL
Sbjct: 387 LSLVNQAKKETYMKLIVPSPDVLKAGNKNTSEESSLLT--SELRSKREQYKQAFPSQLKK 444
Query: 371 PPLAQAIRDYVNSLLVQGGVGSLPG-----TSNSMPPLDVENI------QKRIDQSKFQE 419
+++++ + +L S P N+ P + N + QS QE
Sbjct: 445 QESSKSLKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQE 504
Query: 420 TEF-LSPPRKVPRLSEKSVEERDSGSFVAFQNIPGSELMSSFAKTVVSHS----LTTLGL 474
L+ K+ +++ S F + N+ S + +T V S L + G
Sbjct: 505 APLALTTKTKMQSKINENIAAASSTPFSSPVNLSTSGRRTPGNQTPVMPSASPILHSQGK 564
Query: 475 EVAKQSQHDKIDASELSFPFHESILKVIEEEWQQVDRQLPS 515
E A + + + S P K + E+++ D +PS
Sbjct: 565 EKAVSNNVNPVKTQHHSHP-----AKSLVEQFRGTDSDIPS 600
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 37.4 bits (85), Expect = 0.047
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDL 110
PPLP G R +GS + RSR+ GR + K+ K R++ +
Sbjct: 101 PPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSRKDTSRNC 159
Query: 111 DVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAE 170
+ + G T E+ K R + T S SS+ + SSS+
Sbjct: 160 SAS---------------TSQGRKASTAPGAEERSKQKARRR-TRSSSSSSSSSSSSSSS 203
Query: 171 NTRQNGSNDSD------RYSDNEEGKKKEHKKVK 198
++ + S+ SD +Y D KKK+ KK+K
Sbjct: 204 SSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 237
>gi|148727245 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 35.8 bits (81), Expect = 0.14
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 151 EQGTESRSSTPLPTISSSAENTRQNGS-NDSDRYSDNEEGK--KKEHKKVKSTRDIVP-F 206
E+ S+ LP S++ + +Q+ S S+ +EG K + ++S ++ +P
Sbjct: 11 EESDASQEGDDLPKSSANTSHPKQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKS 70
Query: 207 SELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQ 266
SE P + + P +P LG+ + K +GD+P+ P T +
Sbjct: 71 SEKAIQPKESNIPKSSAKP---IQPKLGNIPKASVKPSQPKEGDIPKAP-EETIQSKKED 126
Query: 267 LQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIV 326
L K + E I K + KSS+ QP+ + T+ PS KE+ K
Sbjct: 127 LPKSSEEA---IQPKEGD---IPKSSAKPIQPK-LGNIAKTSVKPSQPKESDIP--KSPE 177
Query: 327 ENICGRE----KSGIQPLCPERSHISDQSPLSSKRKALEESESSQ 367
E I +E KS +P+ P+ +I S S+ K + S+S +
Sbjct: 178 ETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPE 222
>gi|148727319 thioredoxin domain-containing 2 isoform 2 [Homo
sapiens]
Length = 553
Score = 35.8 bits (81), Expect = 0.14
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 151 EQGTESRSSTPLPTISSSAENTRQNGS-NDSDRYSDNEEGK--KKEHKKVKSTRDIVP-F 206
E+ S+ LP S++ + +Q+ S S+ +EG K + ++S ++ +P
Sbjct: 78 EESDASQEGDDLPKSSANTSHPKQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKS 137
Query: 207 SELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQ 266
SE P + + P +P LG+ + K +GD+P+ P T +
Sbjct: 138 SEKAIQPKESNIPKSSAKP---IQPKLGNIPKASVKPSQPKEGDIPKAP-EETIQSKKED 193
Query: 267 LQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIV 326
L K + E I K + KSS+ QP+ + T+ PS KE+ K
Sbjct: 194 LPKSSEEA---IQPKEGD---IPKSSAKPIQPK-LGNIAKTSVKPSQPKESDIP--KSPE 244
Query: 327 ENICGRE----KSGIQPLCPERSHISDQSPLSSKRKALEESESSQ 367
E I +E KS +P+ P+ +I S S+ K + S+S +
Sbjct: 245 ETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPE 289
>gi|42516570 thioredoxin domain-containing 2 isoform 1 [Homo
sapiens]
Length = 486
Score = 35.8 bits (81), Expect = 0.14
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 21/225 (9%)
Query: 151 EQGTESRSSTPLPTISSSAENTRQNGS-NDSDRYSDNEEGK--KKEHKKVKSTRDIVP-F 206
E+ S+ LP S++ + +Q+ S S+ +EG K + ++S ++ +P
Sbjct: 11 EESDASQEGDDLPKSSANTSHPKQDDSPKSSEETIQPKEGDIPKAPEETIQSKKEDLPKS 70
Query: 207 SELGTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKVHTSKGDLPREPLVATNLPGRGQ 266
SE P + + P +P LG+ + K +GD+P+ P T +
Sbjct: 71 SEKAIQPKESNIPKSSAKP---IQPKLGNIPKASVKPSQPKEGDIPKAP-EETIQSKKED 126
Query: 267 LQKLASERNLFISCKSSHDRCLEKSSSSSSQPEHSAMLVSTAASPSLIKETTTGYYKDIV 326
L K + E I K + KSS+ QP+ + T+ PS KE+ K
Sbjct: 127 LPKSSEEA---IQPKEGD---IPKSSAKPIQPK-LGNIAKTSVKPSQPKESDIP--KSPE 177
Query: 327 ENICGRE----KSGIQPLCPERSHISDQSPLSSKRKALEESESSQ 367
E I +E KS +P+ P+ +I S S+ K + S+S +
Sbjct: 178 ETIQPKEGDIPKSSAKPIQPKLGNIPKASVKPSQPKEGDISKSPE 222
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 35.4 bits (80), Expect = 0.18
Identities = 27/107 (25%), Positives = 43/107 (40%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375
Query: 167 SSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTP 213
SS + R + + S + K + K + R P +L P
Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 35.4 bits (80), Expect = 0.18
Identities = 27/107 (25%), Positives = 43/107 (40%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1316 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1375
Query: 167 SSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTP 213
SS + R + + S + K + K + R P +L P
Sbjct: 1376 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1422
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.4 bits (80), Expect = 0.18
Identities = 27/107 (25%), Positives = 43/107 (40%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1349 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1408
Query: 167 SSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTP 213
SS + R + + S + K + K + R P +L P
Sbjct: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1455
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 35.4 bits (80), Expect = 0.18
Identities = 27/107 (25%), Positives = 43/107 (40%)
Query: 107 KDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTIS 166
KDD +V LT E+ +++ G V + L EK+ LK E+GT +
Sbjct: 1349 KDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKK 1408
Query: 167 SSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTP 213
SS + R + + S + K + K + R P +L P
Sbjct: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNP 1455
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.31
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
PP A T+S+ PP + E P GSG AAG R +GR
Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 34.7 bits (78), Expect = 0.31
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 51 PPLPAGTNSKGPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGR 93
PP A T+S+ PP + E P GSG AAG R +GR
Sbjct: 58 PPSHASTSSRSPPPRARRTEPAVPPSCGSGPGAAGALRMGLGR 100
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 34.7 bits (78), Expect = 0.31
Identities = 81/353 (22%), Positives = 122/353 (34%), Gaps = 39/353 (11%)
Query: 78 GSGAAAAGRSRAAVGRKATKK--TDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIV 135
GSG + RSR+A +K T R + K D L + + P+V
Sbjct: 209 GSGFISGRRSRSASPSTQQEKHPTHHERGQKKSRKDKERLKQKHKKRPESPPSILTPPVV 268
Query: 136 GTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHK 195
T K+ + S SS + ++E++R++ S +S + +GKK
Sbjct: 269 PTADKV----------SSSASSSSHHEASTQETSESSRESKGKKSSSHSLSHKGKKLSSG 318
Query: 196 KVKSTRDIVPFSELGTTPSGGGFFQGI-----SFPEISTRPPLGSTELQAAKKVHTSKGD 250
K S+ S ++ S GG FQ S P+ S P L E K
Sbjct: 319 KGVSSFTSASSSSSSSSSSSGGPFQPAVSSLQSSPDFSAFPKLEQPEEDKYSKPTAPAPS 378
Query: 251 LPREPLVATNLPGRGQL--QKLA----SERNLFISCKSSHDRCLEKSSSSSSQPEHSAML 304
P P + P + L QK+ F + SS R S P +
Sbjct: 379 APPSP--SAPEPPKADLFEQKVVFSGFGPIMRFSTTTSSSGRARAPSPGDYKSPHVTGSG 436
Query: 305 VSTAASPSLIKETTTGYYKDIVENICGREKSGIQPLCPERSHISDQSPLSSKRK------ 358
S + + T D +EK + +RS P S+ K
Sbjct: 437 ASAGTHKRMPALSATPVPADETPETGLKEK---KHKASKRSRHGPGRPKGSRNKEGTGGP 493
Query: 359 ALEESESSQLISPPLAQAIRDYVNSLLVQGGVGSLP----GTSNSMPPLDVEN 407
A S+QL + A A + LV G+G L G S S+P L +E+
Sbjct: 494 AAPSLPSAQL-AGFTATAASPFSGGSLVSSGLGGLSSRTFGPSGSLPSLSLES 545
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 34.7 bits (78), Expect = 0.31
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 138 TRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKV 197
TRKL KK +K +E+G E S P S +NG D R ++G K HK V
Sbjct: 197 TRKLPPKKDMKEQEKG-EGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNK--HKWV 253
Query: 198 KSTRDI---VPFSELGTTPS 214
D+ VP +L + P+
Sbjct: 254 PLQIDMKPEVPREKLASRPT 273
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 34.7 bits (78), Expect = 0.31
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 138 TRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKV 197
TRKL KK +K +E+G E S P S +NG D R ++G K HK V
Sbjct: 120 TRKLPPKKDMKEQEKG-EGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNK--HKWV 176
Query: 198 KSTRDI---VPFSELGTTPS 214
D+ VP +L + P+
Sbjct: 177 PLQIDMKPEVPREKLASRPT 196
>gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]
Length = 293
Score = 34.7 bits (78), Expect = 0.31
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 5/148 (3%)
Query: 102 PRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRKLYEKKLLKL--REQGTESRSS 159
P + + D D ++TN VK + ++K ++KK K ++Q + +
Sbjct: 118 PEEFETDSSDQQDITNGKKTSPQVKSSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEA 177
Query: 160 TPLPTISSSAENTRQNGSNDSDRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFF 219
T + T SS+E + + G++ + + + KKK K KS + F E + S
Sbjct: 178 TDI-TADSSSEFSEETGASGTRKGKQPHKRKKKSRK--KSLKKPALFLEAESNTSHSDDS 234
Query: 220 QGISFPEISTRPPLGSTELQAAKKVHTS 247
S E R + + KK HTS
Sbjct: 235 ASSSSEESEERDTKKTKRKKREKKAHTS 262
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,214,230
Number of Sequences: 37866
Number of extensions: 1270909
Number of successful extensions: 4840
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 4679
Number of HSP's gapped (non-prelim): 253
length of query: 694
length of database: 18,247,518
effective HSP length: 109
effective length of query: 585
effective length of database: 14,120,124
effective search space: 8260272540
effective search space used: 8260272540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.