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Search of human proteins with 4506903
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506903 splicing factor, arginine/serine-rich 9 [Homo
sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 471 e-133
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 297 4e-81
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 259 1e-69
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 136 2e-32
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 130 9e-31
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 122 2e-28
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 122 2e-28
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 73 2e-13
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 69 4e-12
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 67 1e-11
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 61 7e-10
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 61 7e-10
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 61 9e-10
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 60 1e-09
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 58 7e-09
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 58 7e-09
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 55 4e-08
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 55 4e-08
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 53 2e-07
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 53 2e-07
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 51 9e-07
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 50 1e-06
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 50 1e-06
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 50 2e-06
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 50 2e-06
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 50 2e-06
gi|109240550 paraspeckle protein 1 [Homo sapiens] 49 3e-06
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 49 3e-06
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 48 6e-06
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 48 6e-06
>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
Length = 221
Score = 471 bits (1212), Expect = e-133
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE
Sbjct: 1 MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFE 60
Query: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP 120
DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP
Sbjct: 61 DPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPP 120
Query: 121 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 180
SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI
Sbjct: 121 SGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 180
Query: 181 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY 221
RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY
Sbjct: 181 RVYPERSTSYGYSRSRSGSRGRDSPYQSRGSPHYFSPFRPY 221
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 297 bits (761), Expect = 4e-81
Identities = 159/238 (66%), Positives = 179/238 (75%), Gaps = 25/238 (10%)
Query: 1 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR 58
MSG RG G D RIYVGNLP D+R KD+ED+FYKYG IR+I+LKNR G PFAFV
Sbjct: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 59 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS 109
FEDPRDAEDA+YGR+GYDY RLRVEFPR+ GG GG PRG R GPP+RRS
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS 119
Query: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK 169
+ RV+VSGLPPSGSWQDLKDHMREAGDVCYADV +DG G+VE++RKEDM YA+RKLD+TK
Sbjct: 120 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 170 FRSHEGETSYIRVYPE--RSTSYGYSRSRSGSRGRD-----------SPYQSRGSPHY 214
FRSHEGET+YIRV + RS SYG SRSRS SR R SP +SRGSP Y
Sbjct: 180 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY 237
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 259 bits (662), Expect = 1e-69
Identities = 133/193 (68%), Positives = 151/193 (78%), Gaps = 14/193 (7%)
Query: 1 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR 58
MSG RG G D RIYVGNLP D+R KD+ED+FYKYG IR+I+LKNR G PFAFV
Sbjct: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 59 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS 109
FEDPRDAEDA+YGR+GYDY RLRVEFPR+ GG GG PRG R GPP+RRS
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS 119
Query: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK 169
+ RV+VSGLPPSGSWQDLKDHMREAGDVCYADV +DG G+VE++RKEDM YA+RKLD+TK
Sbjct: 120 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 170 FRSHEGETSYIRV 182
FRSH E Y R+
Sbjct: 180 FRSH--EVGYTRI 190
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 136 bits (342), Expect = 2e-32
Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 21/210 (10%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
R+Y+G L RE+D+E F YG+I E++LKN +G FV F+D RDA+DA+Y NG
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFDDLRDADDAVYELNG 57
Query: 75 YDYGQCRLRVEFPR------TYG-GRGGWP--RGGRN--GPPTRRSDFRVLVSGLPPSGS 123
D R+ VE R +YG GR G+ R GR+ GPPTR +++R++V L S
Sbjct: 58 KDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-TEYRLIVENLSSRCS 116
Query: 124 WQDLKDHMREAGDVCYADVQK--DGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR 181
WQDLKD+MR+AG+V YAD K G++E++ DM+ AL KLD T+ + +
Sbjct: 117 WQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR--KIRLVE 174
Query: 182 VYPERSTSYGYSRSRSGSRGRDSPYQSRGS 211
P YSRSRS SR R SR S
Sbjct: 175 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKS 204
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 130 bits (327), Expect = 9e-31
Identities = 86/216 (39%), Positives = 115/216 (53%), Gaps = 25/216 (11%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
R+Y+G L +VREKD++ F YGR+ E++LKN +G FV FED RDA+DA+Y NG
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYG-----FVEFEDSRDADDAVYELNG 57
Query: 75 YDYGQCRLRVEFPR---------TYGGRGGWP------RGGRN--GPPTRRSDFRVLVSG 117
+ R+ VE R +YG R G GR+ GPP R +++R++V
Sbjct: 58 KELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVR-TEYRLIVEN 116
Query: 118 LPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDDTKFRSHEG 175
L SWQDLKD MR+AG+V YAD K+ G++E+ DM+ AL KLD T+
Sbjct: 117 LSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
Query: 176 ETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRGS 211
+ SY SRSRS SR R R S
Sbjct: 177 RLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSS 212
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 122 bits (306), Expect = 2e-28
Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 27/217 (12%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
R+++G L REKD+E F YGRIR+I+LK F FV FEDPRDA+DA+Y +G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAVYELDG 59
Query: 75 YDYGQCRLRVEFPR--TYGGRGGW----------PRGGRNGPPTRRSDFRVLVSGLPPSG 122
+ R+ +E R + GGRG PR R P R++ R++V L
Sbjct: 60 KELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV 119
Query: 123 SWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-----DDTKFRSHEG 175
SWQDLKD MR+AG+V +AD + + G+VE+ D++ A+ KL + K + EG
Sbjct: 120 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEG 179
Query: 176 ETSYIRVYP---ERSTSYGYSRSRSGSRGRDSPYQSR 209
+ R R+ S SRSRS SR R S +SR
Sbjct: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR 216
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 122 bits (306), Expect = 2e-28
Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 27/217 (12%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
R+++G L REKD+E F YGRIR+I+LK F FV FEDPRDA+DA+Y +G
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAVYELDG 59
Query: 75 YDYGQCRLRVEFPR--TYGGRGGW----------PRGGRNGPPTRRSDFRVLVSGLPPSG 122
+ R+ +E R + GGRG PR R P R++ R++V L
Sbjct: 60 KELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV 119
Query: 123 SWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-----DDTKFRSHEG 175
SWQDLKD MR+AG+V +AD + + G+VE+ D++ A+ KL + K + EG
Sbjct: 120 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEG 179
Query: 176 ETSYIRVYP---ERSTSYGYSRSRSGSRGRDSPYQSR 209
+ R R+ S SRSRS SR R S +SR
Sbjct: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR 216
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 72.8 bits (177), Expect = 2e-13
Identities = 66/194 (34%), Positives = 85/194 (43%), Gaps = 48/194 (24%)
Query: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLVPFAFVRFEDPRDAEDAIY 70
G+ ++YVGNL T + +LE F YG +R + + +N G FAFV FEDPRDAEDA+
Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPG---FAFVEFEDPRDAEDAVR 65
Query: 71 GRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDH 130
G +G R+RVE G PR R P R F
Sbjct: 66 GLDGKVICGSRVRVELST------GMPRRSRFDRPPARRPF------------------- 100
Query: 131 MREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSY 190
+ D CY +K G Y + Y+ R+ ++ RSH RS
Sbjct: 101 --DPNDRCYECGEK---GHYAY---DCHRYSRRRRSRSRSRSH-----------SRSRGR 141
Query: 191 GYSRSRSGSRGRDS 204
YSRSRS SRGR S
Sbjct: 142 RYSRSRSRSRGRRS 155
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 68.6 bits (166), Expect = 4e-12
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
++++GNLP + E+++ LF +YG++ E ++ +G FV ED AEDAI +
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 57
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Y + VE + ++ ++ V + P+ + Q+L+ E
Sbjct: 58 YKLHGVNINVEASKN----------------KSKASTKLHVGNISPTCTNQELRAKFEEY 101
Query: 135 GDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF---RSH-EGETSYIRVYPERSTSY 190
G V D+ KD V R ED A+R LD+T+F R H + TS +R P
Sbjct: 102 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 160
Query: 191 G-YSRSRSGSRGRDSPYQSRG 210
G Y + G ++ P G
Sbjct: 161 GCYRCGKEGHWSKECPVDRTG 181
Score = 36.6 bits (83), Expect = 0.017
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 5 ADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRD 64
A + + +++VGN+ ++L F +YG + E ++ + +AFV E D
Sbjct: 69 ASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAED 123
Query: 65 AEDAIYGRNGYDYGQCRLRVEFP----RTYGGRG---GWPRGGRNG 103
A +AI G + ++ R+ V+ RT G G G R G+ G
Sbjct: 124 AVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 67.0 bits (162), Expect = 1e-11
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
++++GNLP + E+++ LF +YG++ E ++ +G FV ED AEDAI +
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYG-----FVHIEDKTAAEDAIRNLHH 57
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
Y + VE + ++ ++ V + P+ + ++L+ E
Sbjct: 58 YKLHGVNINVEASKN----------------KSKTSTKLHVGNISPTCTNKELRAKFEEY 101
Query: 135 GDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTKF---RSH-EGETSYIRVYPERSTSY 190
G V D+ KD V R ED A+R LD+T+F R H + TS +R P
Sbjct: 102 GPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQS 160
Query: 191 G-YSRSRSGSRGRDSPYQSRG 210
G Y + G ++ P G
Sbjct: 161 GCYRCGKEGHWSKECPIDRSG 181
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 61.2 bits (147), Expect = 7e-10
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 14 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIY 70
G++++G L T+ EK LE +F KYGRI E+ L + + FAFV FE P DA+DA
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 71 GRNGYDYGQCRLRVEF----------------------PRTYG-GRGGWPRGGRNGPPTR 107
NG ++VE PR +G GRGG GG GPP+R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG--SGGTRGPPSR 125
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 61.2 bits (147), Expect = 7e-10
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 14 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIY 70
G++++G L T+ EK LE +F KYGRI E+ L + + FAFV FE P DA+DA
Sbjct: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 71 GRNGYDYGQCRLRVEF----------------------PRTYG-GRGGWPRGGRNGPPTR 107
NG ++VE PR +G GRGG GG GPP+R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG--SGGTRGPPSR 125
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 60.8 bits (146), Expect = 9e-10
Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 13 DGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLVPFAFVRFEDPRDAEDAIYG 71
D ++YVGNL + + +LE F YG +R + + +N G FAFV FEDPRDA DA+
Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG---FAFVEFEDPRDAADAVRE 65
Query: 72 RNGYDYGQCRLRVEF------------PRTYGGRGGWPRGGRNGPPTRRSDFR 112
+G CR+RVE P ++G R R+ PP RRS R
Sbjct: 66 LDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 60.1 bits (144), Expect = 1e-09
Identities = 44/120 (36%), Positives = 58/120 (48%), Gaps = 28/120 (23%)
Query: 14 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAIY 70
G++++G L T+ EK LE +F KYGRI E+ L + + FAFV FE P DA+DA
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 71 GRNGYDYGQCRLRVEF----------------PRT-------YGGRGGWPRGGRNGPPTR 107
NG ++VE PR+ GGRGG GG GPP+R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG--SGGTRGPPSR 125
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 57.8 bits (138), Expect = 7e-09
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 10 GEGD--GRIYVGNLPTDVREKDLEDLFYKYGRIREIELK---NRHGLVPFAFVRFEDPRD 64
GE D G+ ++G L T+ +K LE +F KYG+I E+ L + FAF+ FE P D
Sbjct: 2 GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61
Query: 65 AEDAIYGRNGYDYGQCRLRVE---FPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPS 121
A+DA NG ++VE P GR G P PP R RVL G S
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPP-----PPPRSRGPPRVLRGGRGGS 116
Query: 122 GSWQD 126
G ++
Sbjct: 117 GGTRE 121
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 57.8 bits (138), Expect = 7e-09
Identities = 45/125 (36%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 10 GEGD--GRIYVGNLPTDVREKDLEDLFYKYGRIREIELK---NRHGLVPFAFVRFEDPRD 64
GE D G+ ++G L T+ +K LE +F KYG+I E+ L + FAF+ FE P D
Sbjct: 2 GEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPAD 61
Query: 65 AEDAIYGRNGYDYGQCRLRVE---FPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPS 121
A+DA NG ++VE P GR G P PP R RVL G S
Sbjct: 62 AKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPP-----PPPRSRGPPRVLRGGRGGS 116
Query: 122 GSWQD 126
G ++
Sbjct: 117 GGTRE 121
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
++++GNLP +V + +L+D F YG + E+ + + L F FV F+D + + R
Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPI 400
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGR-NGPPTRRSDFRVLVSGLPPSGSWQ 125
G+ RL VE +T R G R R GP R + G P G Q
Sbjct: 401 MFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQ 452
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 55.5 bits (132), Expect = 4e-08
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
++++GNLP +V + +L+D F YG + E+ + + L F FV F+D + + R
Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPI 400
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGR-NGPPTRRSDFRVLVSGLPPSGSWQ 125
G+ RL VE +T R G R R GP R + G P G Q
Sbjct: 401 MFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRGGMVQ 452
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 16/101 (15%)
Query: 13 DGRIYVGNLPTDVREKDLEDLFYKYGRIREI------ELKNRHGLVPFAFVRFEDPRDAE 66
+G+++VG L D E+ LE +F KYG+I E+ E + G F FV FE+ DA+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRG---FGFVTFENIDDAK 61
Query: 67 DAIYGRNGYDYGQCRLRVEFP------RTYGGRGGWPRGGR 101
DA+ NG ++RV+ R+ G RGG GGR
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGG-SAGGR 101
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 52.8 bits (125), Expect = 2e-07
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 11 EGDGR---IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRH-GLVPFAFVRFEDPRDAE 66
E DG+ +YVGNL DV E + LF + G + ++ H P+ FV F + RDA
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 67 DAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD----FRVLVSGLPPSG 122
A+ NG ++V + T P +++ D F V V L P
Sbjct: 63 AALAAMNGRKILGKEVKVNWATT--------------PSSQKKDTSNHFHVFVGDLSPEI 108
Query: 123 SWQDLKDHMREAGDVCYADVQKD-------GVGMVEYLRKEDMEYAL 162
+ +D+K G + A V KD G G V + K D E A+
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155
Score = 30.8 bits (68), Expect = 0.96
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
+Y G + + + ++ + F +G+I EI + G ++FVRF A AI NG
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG---YSFVRFSTHESAAHAIVSVNG 262
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 50.8 bits (120), Expect = 9e-07
Identities = 39/104 (37%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 11 EGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIEL------KNRHGLVPFAFVRFEDPRD 64
EG + V NL L +F KYGR+ ++ + K G FAFVRF D RD
Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRG---FAFVRFHDKRD 67
Query: 65 AEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRR 108
AEDA+ +G LRV+ R GR R GPP RR
Sbjct: 68 AEDAMDAMDGAVLDGRELRVQMARY--GRPPDSHHSRRGPPPRR 109
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 50.4 bits (119), Expect = 1e-06
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 26/162 (16%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIE-LKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
+YVGNL DV E + LF + G + + + + G P+ FV F + R A A+ NG
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD----FRVLVSGLPPSGSWQDLKDH 130
++V + T P +++ D F V V L P + +D+K
Sbjct: 69 RKIMGKEVKVNWATT--------------PSSQKKDTSNHFHVFVGDLSPEITTEDIKAA 114
Query: 131 MREAGDVCYADVQKD-------GVGMVEYLRKEDMEYALRKL 165
G + A V KD G G V + K D E A++++
Sbjct: 115 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Score = 31.2 bits (69), Expect = 0.73
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
+Y G + + + E+ + F +G+I EI + G ++FVRF A AI NG
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG---YSFVRFNSHESAAHAIVSVNG 260
Score = 30.8 bits (68), Expect = 0.96
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRDAEDAIYGR 72
++VG+L ++ +D++ F +GRI + + + FV F + DAE+AI
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 73 NGYDYGQCRLRVEF 86
G G ++R +
Sbjct: 157 GGQWLGGRQIRTNW 170
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 50.4 bits (119), Expect = 1e-06
Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIE-LKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
+YVGNL DV E + LF + G + + + + G P+ FV F + R A A+ NG
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSD-FRVLVSGLPPSGSWQDLKDHMRE 133
++V + T + R D F V V L P + +D+K
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 128
Query: 134 AGDVCYADVQKD-------GVGMVEYLRKEDMEYALRKL 165
G + A V KD G G V + K D E A++++
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Score = 31.2 bits (69), Expect = 0.73
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
+Y G + + + E+ + F +G+I EI + G ++FVRF A AI NG
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG---YSFVRFNSHESAAHAIVSVNG 271
Score = 30.8 bits (68), Expect = 0.96
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGL---VPFAFVRFEDPRDAEDAIYGR 72
++VG+L ++ +D++ F +GRI + + + FV F + DAE+AI
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 73 NGYDYGQCRLRVEF 86
G G ++R +
Sbjct: 168 GGQWLGGRQIRTNW 181
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIEL--KNRHGLVP-FAFVRFEDPRDAEDAIYG 71
+++VGNLP D+ E +L++ F +G + E+ + K G +P F FV F+D + +
Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
Query: 72 RNGYDYGQCRLRVEFPRTYGGRGGWPRGG 100
+ G+ RL VE +T R RGG
Sbjct: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIEL--KNRHGLVP-FAFVRFEDPRDAEDAIYG 71
+++VGNLP D+ E +L++ F +G + E+ + K G +P F FV F+D + +
Sbjct: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
Query: 72 RNGYDYGQCRLRVEFPRTYGGRGGWPRGG 100
+ G+ RL VE +T R RGG
Sbjct: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIEL--KNRHGLVP-FAFVRFEDPRDAEDAIYG 71
+++VGNLP D+ E +L++ F +G + E+ + K G +P F FV F+D + +
Sbjct: 299 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 358
Query: 72 RNGYDYGQCRLRVEFPRTYGGRGGWPRGG 100
+ G+ RL VE +T R RGG
Sbjct: 359 KPIMFRGEVRLNVEEKKTRAARERETRGG 387
>gi|109240550 paraspeckle protein 1 [Homo sapiens]
Length = 523
Score = 49.3 bits (116), Expect = 3e-06
Identities = 48/162 (29%), Positives = 66/162 (40%), Gaps = 29/162 (17%)
Query: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
R++VGNLPTD+ E+D + LF +YG E+ + G F F+R E AE A +G
Sbjct: 83 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRG---FGFIRLESRTLAEIAKAELDG 139
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 134
LR+ F T+G + V L P S + L+ +
Sbjct: 140 TILKSRPLRIRF-ATHGA-------------------ALTVKNLSPVVSNELLEQAFSQF 179
Query: 135 GDVCYADVQKD------GVGMVEYLRKEDMEYALRKLDDTKF 170
G V A V D G G VE+ K AL + D F
Sbjct: 180 GPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 221
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 48.9 bits (115), Expect = 3e-06
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 18 VGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLVP--FAFVRFEDPRDAEDAIYGRNG 74
V NL L +F KYGR+ ++ + + H P FAFVRF D RDA+DA +G
Sbjct: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
Query: 75 YDYGQCRLRVEFPRTYGGRGGWPRGGRNGPPTRRS 109
+ LRV+ R GR PR R G P RS
Sbjct: 78 AELDGRELRVQVARY--GRRDLPR-SRQGEPRGRS 109
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 48.1 bits (113), Expect = 6e-06
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 14 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLV-PFAFVRFEDPRDAEDAIYG 71
G++++G L + EK L+ +F K+G I E+ L K+R FAF+ FE+P DA++A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 72 RNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPP 105
NG ++VE + + + GGR PP
Sbjct: 68 MNGKSLHGKAIKVEQAK----KPSFQSGGRRRPP 97
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 48.1 bits (113), Expect = 6e-06
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 14 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHGLV-PFAFVRFEDPRDAEDAIYG 71
G++++G L + EK L+ +F K+G I E+ L K+R FAF+ FE+P DA++A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 72 RNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPP 105
NG ++VE + + + GGR PP
Sbjct: 68 MNGKSLHGKAIKVEQAK----KPSFQSGGRRRPP 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.142 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,225,789
Number of Sequences: 37866
Number of extensions: 526861
Number of successful extensions: 1977
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 513
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.