Search of human proteins with 4506671

Search of human proteins with 4506671

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506671 ribosomal protein P2 [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506671 ribosomal protein P2 [Homo sapiens]                        221   7e-59
gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]               63   4e-11
gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]              62   1e-10
gi|4506667 ribosomal protein P0 [Homo sapiens]                         54   3e-08
gi|16933546 ribosomal protein P0 [Homo sapiens]                        54   3e-08
gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]            51   2e-07
gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo ...    51   2e-07
gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo ...    51   2e-07
gi|13376339 plasticity-related protein 2 [Homo sapiens]                39   0.001
gi|55956788 nucleolin [Homo sapiens]                                   35   0.010
gi|30795231 brain abundant, membrane attached signal protein 1 [...    35   0.010
gi|23346412 cysteine-serine-rich nuclear protein 3 [Homo sapiens]      33   0.063
gi|28274705 family with sequence similarity 9, member A [Homo sa...    33   0.063
gi|148762978 similar to CG15216-PA [Homo sapiens]                      33   0.063
gi|150418009 transforming, acidic coiled-coil containing protein...    32   0.083
gi|6912492 mitogen-activated protein kinase 8 interacting protei...    32   0.083
gi|7706537 mitogen-activated protein kinase 8 interacting protei...    32   0.083
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H...    32   0.14 
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]         31   0.18 
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]    31   0.18 
gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]           31   0.18 
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     31   0.18 
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap...    31   0.24 
gi|24497556 homeobox A7 [Homo sapiens]                                 31   0.24 
gi|239749940 PREDICTED: similar to deformed epidermal autoregula...    31   0.24 
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         31   0.24 
gi|138175817 zinc finger protein 236 [Homo sapiens]                    31   0.24 
gi|24233572 zinc finger protein 367 [Homo sapiens]                     31   0.24 
gi|11141903 FAST kinase domains 5 [Homo sapiens]                       31   0.24 
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         31   0.24 

>gi|4506671 ribosomal protein P2 [Homo sapiens]
          Length = 115

 Score =  221 bits (564), Expect = 7e-59
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
           MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
Sbjct: 1   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60

Query: 61  KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
           KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD
Sbjct: 61  KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115


>gi|4506669 ribosomal protein P1 isoform 1 [Homo sapiens]
          Length = 114

 Score = 63.2 bits (152), Expect = 4e-11
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 12/101 (11%)

Query: 26  ILDSVGIEADDDRLNKVISELNGKNIED---------VIAQGIGKL-ASVPAGGAVAVSA 75
           IL    +   +D++N +I    G N+E          +    IG L  +V AGG    + 
Sbjct: 15  ILHDDEVTVTEDKINALIKAA-GVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAG 73

Query: 76  APGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
           A  +  PA  +A A AEEKK E KKEESEESDDDMGFGLFD
Sbjct: 74  AAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>gi|47524167 ribosomal protein P1 isoform 2 [Homo sapiens]
          Length = 89

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
           + +V AGG    + A  +  PA  +A A AEEKK E KKEESEESDDDMGFGLFD
Sbjct: 35  ICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 89


>gi|4506667 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 33/54 (61%), Positives = 36/54 (66%), Gaps = 5/54 (9%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
           LA   A  A A  AA  +AAPAA +APA     K E KEESEESD+DMGFGLFD
Sbjct: 269 LADPSAFVAAAPVAAATTAAPAAAAAPA-----KVEAKEESEESDEDMGFGLFD 317


>gi|16933546 ribosomal protein P0 [Homo sapiens]
          Length = 317

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 33/54 (61%), Positives = 36/54 (66%), Gaps = 5/54 (9%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
           LA   A  A A  AA  +AAPAA +APA     K E KEESEESD+DMGFGLFD
Sbjct: 269 LADPSAFVAAAPVAAATTAAPAAAAAPA-----KVEAKEESEESDEDMGFGLFD 317


>gi|239756106 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 153

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
           + +V AGG      A  +  PA  +  A AEEKK E KKEE EE DDDM FGLFD
Sbjct: 99  ICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239750635 PREDICTED: hypothetical protein XP_002347460 [Homo
           sapiens]
          Length = 153

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
           + +V AGG      A  +  PA  +  A AEEKK E KKEE EE DDDM FGLFD
Sbjct: 99  ICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|239744944 PREDICTED: hypothetical protein XP_002343314 [Homo
           sapiens]
          Length = 153

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDDMGFGLFD 115
           + +V AGG      A  +  PA  +  A AEEKK E KKEE EE DDDM FGLFD
Sbjct: 99  ICNVGAGGPAPTVGAAPAEGPAPTTTAAPAEEKKVETKKEEPEEYDDDMDFGLFD 153


>gi|13376339 plasticity-related protein 2 [Homo sapiens]
          Length = 746

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 16  SSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSA 75
           S+PS  D  +   ++ +  D  R  ++ISE   K++E    +G+G          +   A
Sbjct: 409 SAPSLDDPARRHMTIHVPLDASRSKQLISEWKQKSLE---GRGLG----------LPDDA 455

Query: 76  APGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMG 110
           +PG     A       EE++DE++EE EE ++D G
Sbjct: 456 SPGHLRAPAEPMAEEEEEEEDEEEEEEEEEEEDEG 490


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 60  GKLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           GK  + P    VA     G+A PA G+      +K+D  +EE ++S++D
Sbjct: 108 GKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEED 156



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 79  SAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           +A  AA +AP A+E++ DE  E+ E+ DDD
Sbjct: 173 AAMKAAAAAP-ASEDEDDEDDEDDEDDDDD 201



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 82  PAAGSAPAAAEEKKDEKKEESEESDDD 108
           PAA  A AAA   +DE  E+ E+ +DD
Sbjct: 172 PAAMKAAAAAPASEDEDDEDDEDDEDD 198



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 72  AVSAAPGSAAPAAGSAPA----AAEEKKDEKKEESEESDDD 108
           A+   P     AA   P      AE++ +E+ +E E+ DDD
Sbjct: 210 AMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDD 250


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 18/35 (51%), Positives = 21/35 (60%)

Query: 66  PAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKE 100
           PA G  A  AA  +AAPA  +APAA EE   E+ E
Sbjct: 113 PAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGE 147


>gi|23346412 cysteine-serine-rich nuclear protein 3 [Homo sapiens]
          Length = 585

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 9   LAALGGNSSPSAKDIK-KILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPA 67
           ++A   +  P A  ++  I DS  IE +        + L+ ++ E++  QG  +      
Sbjct: 295 ISAHSSSMGPVAHSVEYSIADSFEIETEPQA-----AVLHLQSAEELDCQG--EEEEEEE 347

Query: 68  GGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD 115
            G+   S    S+  +   + +  EE+++E++EE E+ DDD G G  +
Sbjct: 348 DGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGDGFVE 395


>gi|28274705 family with sequence similarity 9, member A [Homo
           sapiens]
          Length = 332

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 67  AGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           A  A A +AA   AA AA       +E+++EK+EE E+ +++
Sbjct: 196 AAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKEEEE 237



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 12/49 (24%)

Query: 74  SAAPGSAAPAAGSAPAAAE------------EKKDEKKEESEESDDDMG 110
           +AA   AA AA +A AAAE            E+++EK+EE EE +++ G
Sbjct: 197 AAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKEEEEEEGEEEGG 245



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 63  ASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           A   A  A A +AA  +AA A        EE++ E++EE EE +++
Sbjct: 194 AEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEEKEEEEEE 239


>gi|148762978 similar to CG15216-PA [Homo sapiens]
          Length = 976

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 62  LASVPAGGAVAVSAAPGSAAPAAGSA--PAAAEEKKDEKKEESEESDDDM 109
           L S PAG      A P S   +AGSA  PAA  E  D   E S + DD M
Sbjct: 614 LDSRPAGSGAPALAPPRSPPASAGSAEEPAAPGEAADASPEPSADEDDLM 663


>gi|150418009 transforming, acidic coiled-coil containing protein 2
            isoform a [Homo sapiens]
          Length = 2948

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 27/101 (26%), Positives = 40/101 (39%)

Query: 11   ALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGA 70
            A G  SSP A DI +      +E+     +    ++ G+   D+IAQ I   A+      
Sbjct: 1853 AEGTESSPVADDIIQPAAPADLESPTLAASSYHGDVVGQVSTDLIAQSISPAAAHAGLPP 1912

Query: 71   VAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGF 111
             A       +APA     A+     D  K+ S  SD +  F
Sbjct: 1913 SAAEHIVSPSAPAGDRVEASTPSCPDPAKDLSRSSDSEEAF 1953


>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
           isoform 1 [Homo sapiens]
          Length = 824

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 75  AAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           AAPG AA    +  AA  E++DE+ +E EE  +D
Sbjct: 451 AAPGRAARPGRACSAACSEEEDEEDDEEEEDAED 484


>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
           isoform 2 [Homo sapiens]
          Length = 797

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 75  AAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           AAPG AA    +  AA  E++DE+ +E EE  +D
Sbjct: 424 AAPGRAARPGRACSAACSEEEDEEDDEEEEDAED 457


>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
           sapiens]
          Length = 747

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 27  LDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGS 86
           LDS G++ D     ++   L+ + +ED    G        AG   A  A P   A A+G 
Sbjct: 20  LDSRGLKVD--LAQRLQEALDAEMLEDEAGGG-------GAGPGGACKAEPRPVA-ASGG 69

Query: 87  APAAAEEKKDEKKEESEES 105
            P   EE+ +E++EE EE+
Sbjct: 70  GPGGDEEEDEEEEEEDEEA 88


>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
          Length = 474

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 35/119 (29%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 7   YLLAALGGNSSPSAKDIKKILDSVGIEAD-DDRLNKVISELNGKNIEDVIAQGIGKLASV 65
           YL   LG +SSP        +  VG  AD  D L     E  G + +     G    AS 
Sbjct: 297 YLFGGLGTSSSP--------VGGVGAGADPSDPLGLYEEEGAGCSPDAPSLSGRSSAASS 348

Query: 66  PAGGAVAVS----AAPGSAAPAAGSAPA-----AAEEKKDEKKEESEESDDDMGFGLFD 115
           PA G         A+  +A+PA  SAP+     A+          S  SDD+    L D
Sbjct: 349 PAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLD 407


>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
          Length = 1759

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)

Query: 74   SAAPGSAAPAAGSAPAAAEEKKDEKKEE----SEESDDD 108
            +AAPG    AA +A AA E  +++++EE     EE++DD
Sbjct: 1654 AAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDD 1692



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 33   EADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGS 86
            E DDD   +  SE   +++ +  A+  G  A  PA  A+A   APG A  AA S
Sbjct: 1708 EDDDDEDLRTDSE---ESLPEAAAEAAGAGARTPALAALAALGAPGPAPTAASS 1758


>gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]
          Length = 387

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 2   RYVASYLLAALGGNSSPSAKDIKKILDS-----VGIEADDDRLNKVISELNGKNIEDVIA 56
           RY     +A +G NS  SA    K  D      VGI   D+   K+I ELN +N   ++A
Sbjct: 61  RYPRKRFVAGVGANSKISALKGSKGKDCEIPVPVGISVTDEN-GKIIGELNKENDRILVA 119

Query: 57  QG 58
           QG
Sbjct: 120 QG 121


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 69  GAVAVSAA--PGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           GA+A+     PG A PAA + P+ ++   +E+  E EE +DD
Sbjct: 293 GALALPRGDRPGRAPPAASARPSRSKRGGEERVLEKEEEEDD 334


>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
           sapiens]
          Length = 565

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 70  AVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDD 107
           A AV+AA   AA AA +A   AEE    + E+SEE  D
Sbjct: 16  AAAVAAAAAVAAAAAAAAGGEAEEPVLSRDEDSEEDAD 53


>gi|24497556 homeobox A7 [Homo sapiens]
          Length = 230

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 74  SAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           +AAP  A P+A  A  AA +K DE+ ++ EE D++
Sbjct: 197 AAAPEGAVPSA--AATAAADKADEEDDDEEEEDEE 229


>gi|239749940 PREDICTED: similar to deformed epidermal
           autoregulatory factor 1 [Homo sapiens]
          Length = 426

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 70  AVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDD 107
           A AV+AA   AA AA +A   AEE    + E+SEE  D
Sbjct: 16  AAAVAAAAAVAAAAAAAAGGEAEEPVLSRDEDSEEDAD 53


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 78  GSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGL 113
           GS   ++   P+  EE+++E++EE EE D++   GL
Sbjct: 255 GSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGL 290



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 73   VSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
            VS  P  A   AG    A EE+++E++EE EE +++
Sbjct: 1004 VSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEEE 1039



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 77  PGSAAPAAGSAPAAAEEKKDEKKEESEESDDD 108
           P  + P++ +   + EE+++E++EE EE +D+
Sbjct: 253 PTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDE 284


>gi|138175817 zinc finger protein 236 [Homo sapiens]
          Length = 1845

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 14/74 (18%), Positives = 35/74 (47%)

Query: 16   SSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSA 75
            +S   +D+ +++ S G+ +     +++   +N  ++  V+AQ  G  A+  +G    ++ 
Sbjct: 1467 NSSGTQDLTQVMTSQGLVSPSGGPHEITLTINNSSLSQVLAQAAGPTATSSSGSPQEITL 1526

Query: 76   APGSAAPAAGSAPA 89
                    +GS P+
Sbjct: 1527 TISELNTTSGSLPS 1540


>gi|24233572 zinc finger protein 367 [Homo sapiens]
          Length = 350

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 48  GKNIEDVI----AQGIGKLASVPAGGAVAVSAAPG-SAAPAAGSAPAAAEEKKDEKKEES 102
           G+N  +V     A G    A++PA  A   S   G  A P A SA AAA   +DE++  S
Sbjct: 74  GENAHNVTLSPGAAGAAASAALPAAAAAEHSGLRGRGAPPPAASASAAASGGEDEEEASS 133

Query: 103 EES 105
            +S
Sbjct: 134 PDS 136


>gi|11141903 FAST kinase domains 5 [Homo sapiens]
          Length = 764

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 16  SSPSAKDIKKILDSVGIEADDDRLNKVI-----SELNGKNIEDVIAQ--GIGKLASVPAG 68
           ++P+    K  L+ VG+   DD +NK++         GK   +   Q   +   A+VP G
Sbjct: 607 ATPAENVAKLRLEHVGVSLTDDLMNKLLKGKARGHFQGKTESEPGQQPMELENKAAVPLG 666

Query: 69  GAVAVSAAPGSAAPAAGSAPAA 90
           G +   A    A   AG  PAA
Sbjct: 667 GFLCNVADKSGAMEMAGLCPAA 688


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 61  KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDM 109
           K  +  A  AV  +A   +    A   P AA E K E + E+E++ DD+
Sbjct: 835 KAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEPKKETESEAEDNLDDL 883


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.127    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,549,982
Number of Sequences: 37866
Number of extensions: 195493
Number of successful extensions: 3589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 2552
Number of HSP's gapped (non-prelim): 968
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.