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Search of human proteins with 4505719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens] 521 e-148
gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens] 200 9e-52
gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens] 53 2e-07
gi|195972866 keratin 10 [Homo sapiens] 36 0.029
gi|5032007 purine-rich element binding protein A [Homo sapiens] 36 0.038
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 36 0.038
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 36 0.038
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 35 0.050
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 35 0.050
gi|13994190 frizzled 8 [Homo sapiens] 35 0.085
gi|37537558 nuclear apoptosis inducing factor 1 [Homo sapiens] 34 0.11
gi|38570105 Ras-interacting protein 1 [Homo sapiens] 34 0.11
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 34 0.15
gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo ... 34 0.15
gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo ... 34 0.15
gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo ... 34 0.15
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 33 0.19
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 33 0.25
gi|229577180 MPN domain containing isoform 2 [Homo sapiens] 32 0.42
gi|31542699 MPN domain containing isoform 1 [Homo sapiens] 32 0.42
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 32 0.42
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 0.55
gi|4507741 twist [Homo sapiens] 32 0.72
gi|47132620 keratin 2 [Homo sapiens] 32 0.72
gi|188497630 hypothetical protein LOC55571 [Homo sapiens] 32 0.72
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.72
gi|84570137 homeobox B3 [Homo sapiens] 32 0.72
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 31 0.94
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 31 0.94
gi|59709427 XK, Kell blood group complex subunit-related family,... 31 0.94
>gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
Length = 259
Score = 521 bits (1342), Expect = e-148
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 60
MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR
Sbjct: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 60
Query: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA
Sbjct: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
Query: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 180
QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG
Sbjct: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 180
Query: 181 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL
Sbjct: 181 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
Query: 241 VSSILSILTLIYPWLRLKP 259
VSSILSILTLIYPWLRLKP
Sbjct: 241 VSSILSILTLIYPWLRLKP 259
>gi|4505717 peroxisomal biogenesis factor 11 alpha [Homo sapiens]
Length = 247
Score = 200 bits (509), Expect = 9e-52
Identities = 102/258 (39%), Positives = 162/258 (62%), Gaps = 13/258 (5%)
Query: 1 MDAWVRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLR 60
MDA+ RF+ Q+Q R+RL RA QY C LL + L+ ++ ++++LES +S GRK R
Sbjct: 1 MDAFTRFTNQTQGRDRLFRATQYTCMLLRYLLEPKAGKEKVVMKLKKLESSVSTGRKWFR 60
Query: 61 LGNSADALESAKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWA 120
LGN A+++ ++++H +D+V R C+T+++LNR +YF CD +LW GL +++EKW
Sbjct: 61 LGNVVHAIQATEQSIHATDLVPRLCLTLANLNRVIYFICDTILWVRSVGLTSGINKEKWR 120
Query: 121 QRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPG 180
R+ +Y +SL+++L RD YEI L M++ + +++ K + S
Sbjct: 121 TRAAHHYYYSLLLSLVRDLYEISLQMKRVTCDRAKKEKSASQDPLWFSVA---------- 170
Query: 181 GGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGL 240
+ L+ +LLL R L+ HPPLLLD V+N CD+ PLD+LG+++ PGI+GL GL
Sbjct: 171 ---EEETEWLQSFLLLLFRSLKQHPPLLLDTVKNLCDILNPLDQLGIYKSNPGIIGLGGL 227
Query: 241 VSSILSILTLIYPWLRLK 258
VSSI ++T+ YP ++LK
Sbjct: 228 VSSIAGMITVAYPQMKLK 245
>gi|18087833 peroxisomal biogenesis factor 11 gamma [Homo sapiens]
Length = 241
Score = 53.1 bits (126), Expect = 2e-07
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 12 QARERLCRAAQYACSLLGHAL-QRHGASPELQKQIRQLESHLSLGRKLLRLGNSADALES 70
+ R+RL R Y C L+G L ++ A E+ ++ + + LS R +LRL +
Sbjct: 15 RGRDRLIRVLGYCCQLVGGVLVEQCPARSEVGTRLLVVSTQLSHCRTILRLFDDLAMFVY 74
Query: 71 AKR---AVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYY 127
K+ D +R + +L LY+ C++V WA + + VD +W S +
Sbjct: 75 TKQYGLGAQEEDAFVRCVSVLGNLADQLYYPCEHVAWAADARVL-HVDSSRWWTLSTTLW 133
Query: 128 LFSLIMNLSRDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLA 187
SL++ ++R + + L + RL+ S T P P G +
Sbjct: 134 ALSLLLGVARSLWMLLKLRQ--------RLR---------SPTAPFTSP-LPRGKRRAME 175
Query: 188 LKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDKLGLWRCGPGIVGLCGLVSSILSI 247
+++ + L L L L + V ++P L R P +VGL G +SSILS+
Sbjct: 176 AQMQSEALSLLSNLAD----LANAVH-----WLPRGVLWAGRFPPWLVGLMGTISSILSM 226
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 36.2 bits (82), Expect = 0.029
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 30/155 (19%)
Query: 40 ELQKQIRQLESHLSLGRKLLRLGNSADALE-------SAKRAVH--LSDVVLRFCITVSH 90
E+ I Q+ S+ S ++ L + ALE + K+++ L++ R+C+ +S
Sbjct: 350 EIDNNIEQISSYKS---EITELRRNVQALEIELQSQLALKQSLEASLAETEGRYCVQLSQ 406
Query: 91 LNRALYFACDNVLWAGKSGLAPRVDQ---EKWAQRSFRYYLFSLIMNLSRDAYEIRLLME 147
+ + S L ++ Q E Q + L + + L + R L+E
Sbjct: 407 IQAQI------------SALEEQLQQIRAETECQNTEYQQLLDIKIRLENEIQTYRSLLE 454
Query: 148 QESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGG 182
E S+ G GGG GG GG G G+ GGG
Sbjct: 455 GEGSSGGG---GRGGGSFGGGYGGGSSGGGSSGGG 486
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
GS G GGS +GG GG + GGG
Sbjct: 516 GSSSGGHGGSSSGGYGGGSSGGGG 539
Score = 29.3 bits (64), Expect = 3.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGG 182
SGGG GGS +GG GG + G G
Sbjct: 509 SGGGYGGGSSSGGHGGSSSGGYG 531
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG GGS GG G GGG
Sbjct: 537 GGGGGYGGGSSGGGSSSGGGYGGG 560
Score = 28.1 bits (61), Expect = 8.0
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 160 SGGGVPGGSETGGLGGPGTPGG 181
SGGG GGS GG G G GG
Sbjct: 495 SGGGYGGGSSGGGSSGGGYGGG 516
>gi|5032007 purine-rich element binding protein A [Homo sapiens]
Length = 322
Score = 35.8 bits (81), Expect = 0.038
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDL 218
GSG G GG GG GG GGG L+ Q L RV + LDV +NA
Sbjct: 25 GSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQELASKRVDIQNKRFYLDVKQNAKGR 84
Query: 219 FIPLDKLG 226
F+ + ++G
Sbjct: 85 FLKIAEVG 92
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 35.8 bits (81), Expect = 0.038
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 26/204 (12%)
Query: 2 DAWVRFSAQSQARERLCRAAQYACS--LLGHALQRHGASPELQKQIRQLESHLSLGRKLL 59
+ +V F ++ + LCR QY + + H + + G ++ IR+ + S ++ +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKID-MIRKRLQNFSYDQREM 531
Query: 60 RLGNSADALESAKRAVHLSDV--------VLRFCITVSHLNRALYFACDNVLWAGKSGLA 111
L D + SAK H++++ VL+F + A++ DN GL
Sbjct: 532 ILNPEGD-VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN----NGQGLG 586
Query: 112 PRVDQ---EKWAQRSFRYYLFSLIMNLSRDAY----EIRLLMEQESSACSRRLKGSGGGV 164
+ Q E A++S R + L R+A+ + + E E + ++ KG V
Sbjct: 587 QALVQFKNEDDARKSERLHRKKLN---GREAFVHVVTLEDMREIEKNPPAQGKKGLKMPV 643
Query: 165 PGGSETGGLGGPGTPGGGLPQLAL 188
PG G+ G PG GLP L
Sbjct: 644 PGNPAVPGMPNAGLPGVGLPSAGL 667
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 35.8 bits (81), Expect = 0.038
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 26/204 (12%)
Query: 2 DAWVRFSAQSQARERLCRAAQYACS--LLGHALQRHGASPELQKQIRQLESHLSLGRKLL 59
+ +V F ++ + LCR QY + + H + + G ++ IR+ + S ++ +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKID-MIRKRLQNFSYDQREM 531
Query: 60 RLGNSADALESAKRAVHLSDV--------VLRFCITVSHLNRALYFACDNVLWAGKSGLA 111
L D + SAK H++++ VL+F + A++ DN GL
Sbjct: 532 ILNPEGD-VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN----NGQGLG 586
Query: 112 PRVDQ---EKWAQRSFRYYLFSLIMNLSRDAY----EIRLLMEQESSACSRRLKGSGGGV 164
+ Q E A++S R + L R+A+ + + E E + ++ KG V
Sbjct: 587 QALVQFKNEDDARKSERLHRKKLN---GREAFVHVVTLEDMREIEKNPPAQGKKGLKMPV 643
Query: 165 PGGSETGGLGGPGTPGGGLPQLAL 188
PG G+ G PG GLP L
Sbjct: 644 PGNPAVPGMPNAGLPGVGLPSAGL 667
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 35.4 bits (80), Expect = 0.050
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 143 RLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGG 182
++ EQ+++ ++ KG GGG GG GG GG G+ GGG
Sbjct: 210 QIAAEQKANPDGKK-KGDGGGAGGGGGGGGSGGGGSGGGG 248
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 35.4 bits (80), Expect = 0.050
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 143 RLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGG 182
++ EQ+++ ++ KG GGG GG GG GG G+ GGG
Sbjct: 194 QIAAEQKANPDGKK-KGDGGGAGGGGGGGGSGGGGSGGGG 232
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.085
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 161 GGGVPGGSETGGLGGPGTPGGG 182
GGG PGG GG GG G PGGG
Sbjct: 640 GGGGPGGGGGGGPGGGGGPGGG 661
Score = 32.7 bits (73), Expect = 0.32
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 140 YEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGG 182
Y +RL+ E ACS G+GG G G G G GG
Sbjct: 327 YLVRLVAGHEKVACSGGAPGAGGAGGAGGAAAGAGAAGAGAGG 369
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 MEQESSACSR---RLKGSG-GGVPGGSETGGLGGPGTPGGGLP 184
+E S C+R KG+ GG G + GG GGPG GGG P
Sbjct: 610 LESWRSLCTRCCWASKGAAVGGGAGATAAGGGGGPGGGGGGGP 652
Score = 29.6 bits (65), Expect = 2.7
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGGL 183
G G G GG GG GGPG GG L
Sbjct: 641 GGGPGGGGGGGPGGGGGPGGGGGSL 665
>gi|37537558 nuclear apoptosis inducing factor 1 [Homo sapiens]
Length = 327
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 77 LSDVVLRFCITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYYLFSLIMNLS 136
+ ++ L+ + V+H N + A + W G+ RV+ A + R L + S
Sbjct: 21 VEELELKKHLLVNHFNAGVPLAAKSAAW---HGILRRVN----AVATCRRELPEVKKKWS 73
Query: 137 RDAYEIRLLMEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGG 181
E+R + Q +A GG PG +E G GGPGT GG
Sbjct: 74 DLKTEVRRKVAQVRAAVE------GGEAPGPTEEDGAGGPGTGGG 112
>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
Length = 963
Score = 34.3 bits (77), Expect = 0.11
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 154 SRRLKGSGGGVPGGSETGGLGGPGTPGGG--------LPQLALKLRLQVLLLARVLRGHP 205
S+ +GSG G G S G GGPGTPGG LP+LA + + L R P
Sbjct: 90 SQLFRGSGTGTTGSS---GAGGPGTPGGAQRWASEKKLPELAAGVAPEPPLATRATA--P 144
Query: 206 PLLLDV 211
P +L +
Sbjct: 145 PGVLKI 150
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.9 bits (76), Expect = 0.15
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 149 ESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGGLP 184
ES A +GGG G +GGLG PG P G +P
Sbjct: 1111 ESMAAFPLFPRAGGGSGGSGSSGGLGPPGRPYGAIP 1146
>gi|239753158 PREDICTED: hypothetical protein XP_002345577 [Homo
sapiens]
Length = 342
Score = 33.9 bits (76), Expect = 0.15
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 155 RRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLL 197
RRL G G G GG G G PGGGLP L+L LQV +L
Sbjct: 213 RRLPLRGDGGSGRQGGGGHWGRGQPGGGLPLQHLQL-LQVFVL 254
>gi|239747728 PREDICTED: hypothetical protein XP_002348255 [Homo
sapiens]
Length = 342
Score = 33.9 bits (76), Expect = 0.15
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 155 RRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLL 197
RRL G G G GG G G PGGGLP L+L LQV +L
Sbjct: 213 RRLPLRGDGGSGRQGGGGHWGRGQPGGGLPLQHLQL-LQVFVL 254
>gi|239741594 PREDICTED: hypothetical protein XP_002342244 [Homo
sapiens]
Length = 342
Score = 33.9 bits (76), Expect = 0.15
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 155 RRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLL 197
RRL G G G GG G G PGGGLP L+L LQV +L
Sbjct: 213 RRLPLRGDGGSGRQGGGGHWGRGQPGGGLPLQHLQL-LQVFVL 254
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 33.5 bits (75), Expect = 0.19
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGGLPQLALKL-RLQVLLLARVLRGHP 205
+GGGVP G+ GGL GT GGG +L ++ R+ V + R+ R P
Sbjct: 212 AGGGVPEGTGAGGLAAGGT-GGGPDRLEPEMVRMVVESVERIFRSFP 257
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 33.1 bits (74), Expect = 0.25
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG GG GG GGPG GGG
Sbjct: 154 GGGGGPGGGPGGGGGGGPGGGGGG 177
Score = 29.3 bits (64), Expect = 3.6
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGGLP 184
G GGG GG G GGPG GGG P
Sbjct: 148 GGGGGPGGGGGPG--GGPGGGGGGGP 171
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GG G GG GG G PGGG
Sbjct: 139 GGGGAHDGPGGGGGPGGGGGPGGG 162
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G+G GG G GG G PGGG
Sbjct: 133 GAGAAAGGGGAHDGPGGGGGPGGG 156
>gi|229577180 MPN domain containing isoform 2 [Homo sapiens]
Length = 451
Score = 32.3 bits (72), Expect = 0.42
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGGLPQLALKLRL 192
SGGG GG+ GG GG PGG L + A+ LR+
Sbjct: 50 SGGGGGGGAGAGGCGG---PGGALTRRAVTLRV 79
>gi|31542699 MPN domain containing isoform 1 [Homo sapiens]
Length = 471
Score = 32.3 bits (72), Expect = 0.42
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGGLPQLALKLRL 192
SGGG GG+ GG GG PGG L + A+ LR+
Sbjct: 50 SGGGGGGGAGAGGCGG---PGGALTRRAVTLRV 79
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.42
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGGLPQLALKL 190
S GG PGGS GG GGPG G P +KL
Sbjct: 64 SSGGGPGGSGGGGSGGPGA-GTSFPPPGVKL 93
Score = 30.4 bits (67), Expect = 1.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG GG G GPG GGG
Sbjct: 26 GGGGGGGGGGPGGSASGPGGTGGG 49
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 32.0 bits (71), Expect = 0.55
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 159 GSGGGVPGGSETGGLGGPGTPG--GGLPQLALKLRLQVLLLARVLRGHPPLLL 209
G GG GG+ +GG G G P GG P + R + + + +R HPP+L+
Sbjct: 2304 GGGGSGGGGAPSGGSGHSGGPSSCGGAPSTS---RSRPSRIPQPVRHHPPVLV 2353
Score = 30.4 bits (67), Expect = 1.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG G GG GG G P GG
Sbjct: 2294 GGGGGSGGSGGGGGSGGGGAPSGG 2317
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 160 SGGGVPGGSETGGLGGPGTPGGGLP 184
SGGG GGS G GG G+ GGG P
Sbjct: 2291 SGGGGGGGSGGSG-GGGGSGGGGAP 2314
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.72
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 154 SRRLKGSGGGVPGGSETGGLGG---PGTPGGG 182
SRR G G G PGG+ GG+GG PG+P G
Sbjct: 42 SRRSAGGGAG-PGGAAGGGVGGGDEPGSPAQG 72
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 31.6 bits (70), Expect = 0.72
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGG 181
G GGG GG GG GGPG GG
Sbjct: 112 GFGGGGFGGGRFGGFGGPGGVGG 134
>gi|188497630 hypothetical protein LOC55571 [Homo sapiens]
Length = 510
Score = 31.6 bits (70), Expect = 0.72
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 139 AYEIRLLMEQESSACSRRLKGSGGGVPGGSETG-GLGGPGTPGG 181
A E R E SA GSGGG G S G G GGPG P G
Sbjct: 16 AAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAG 59
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 31.6 bits (70), Expect = 0.72
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 157 LKGSGGGVPGGSETGGLGGPGTPGGG 182
L G GGG GG GG GG G+ GGG
Sbjct: 54 LDGGGGG--GGGGAGGAGGAGSAGGG 77
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 31.6 bits (70), Expect = 0.72
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG GG +GG GG G GGG
Sbjct: 154 GGGGGGGGGGGSGGSGGGGGGGGG 177
Score = 28.5 bits (62), Expect = 6.1
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 146 MEQESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGG 182
++ S + G GGG GG G GG G GGG
Sbjct: 142 LKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGG 178
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 31.2 bits (69), Expect = 0.94
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 159 GSGGGVPGGSETGGLGGPGTPGGG 182
G GGG GGS G GG G GGG
Sbjct: 165 GHGGGGGGGSSNAGGGGGGASGGG 188
Score = 28.1 bits (61), Expect = 8.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 156 RLKGSGGGVPGGSETGGLGGPGTPGGG 182
++ GSGGG GG GG G GGG
Sbjct: 157 KVGGSGGGGHGGGGGGGSSNAGGGGGG 183
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 31.2 bits (69), Expect = 0.94
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 149 ESSACSRRLKGSGGGVPGGSETGGLGGPGTPGGGL 183
E +RL GG GG GG GG G GGGL
Sbjct: 20 EKLLSGKRLSSGFGGGGGGGSGGGGGGSGGGGGGL 54
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 31.2 bits (69), Expect = 0.94
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 151 SACSRRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRL 192
S C GSGG G +GG+ GPG GGG AL LRL
Sbjct: 62 SRCCCCCAGSGGSAGSGG-SGGVAGPG--GGGAGSAALCLRL 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,695,898
Number of Sequences: 37866
Number of extensions: 515453
Number of successful extensions: 5989
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 4863
Number of HSP's gapped (non-prelim): 969
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.