Guide to the Human Genome
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Name: PEX11A Sequence: fasta or formatted (247aa) NCBI GI: 4505717
Description:

peroxisomal biogenesis factor 11 alpha

Referenced in:

Peroxisomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         14           2
 C cysteine            2.0          5           1
 D aspartate           4.0         10           1
 E glutamate           4.5         11           3
 F phenylalanine       3.2          8           1
 G glycine             4.9         12           2
 H histidine           2.0          5           2
 I isoleucine          5.3         13           2
 K lysine              7.3         18           2
 L leucine            15.4         38           4
 M methionine          2.4          6           1
 N asparagine          3.2          8           1
 P proline             3.2          8           2
 Q glutamine           4.5         11           1
 R arginine            6.9         17           1
 S serine              6.9         17           2
 T threonine           6.9         17           1
 V valine              6.1         15           2
 W tryptophan          2.0          5           1
 Y tyrosine            3.6          9           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 11 alpha 
PEX11B                0.372   peroxisomal biogenesis factor 11 beta 
PEX11G                0.055   peroxisomal biogenesis factor 11 gamma 
SPAG6                 0.017   sperm associated antigen 6 isoform 1 
SPAG6                 0.017   sperm associated antigen 6 isoform 2 
GRAMD1A               0.006   GRAM domain containing 1A isoform 2 
GRAMD1A               0.006   GRAM domain containing 1A isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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