Search of human proteins with 4505187

Search of human proteins with 4505187

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]       248   8e-67
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]             72   8e-14
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]     69   7e-13
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]            68   2e-12
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]             65   2e-11
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi...    65   2e-11
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]       65   2e-11
gi|4505981 pro-platelet basic protein precursor [Homo sapiens]         55   1e-08
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota...    52   2e-07
gi|10834978 interleukin 8 precursor [Homo sapiens]                     47   5e-06
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    43   5e-05
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ...    43   5e-05
gi|4505735 platelet factor 4 variant 1 [Homo sapiens]                  40   4e-04
gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]            39   0.001
gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo sap...    34   0.025
gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo sap...    34   0.025
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]          34   0.033
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    34   0.033
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    33   0.043
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri...    33   0.043
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]    33   0.043
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]           33   0.056
gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]           32   0.095
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]          32   0.095
gi|117414154 sodium channel associated protein 2 isoform b [Homo...    32   0.12 
gi|117414162 sodium channel associated protein 2 isoform a [Homo...    32   0.12 
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    32   0.16 
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    32   0.16 
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    32   0.16 
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    32   0.16 

>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
          Length = 125

 Score =  248 bits (633), Expect = 8e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 60
           MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
Sbjct: 1   MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 60

Query: 61  IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR 120
           IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR
Sbjct: 61  IEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSR 120

Query: 121 QKKTT 125
           QKKTT
Sbjct: 121 QKKTT 125


>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
          Length = 107

 Score = 72.4 bits (176), Expect = 8e-14
 Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 5/89 (5%)

Query: 7   LFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIE 62
           L  + ++LL+L+       G P+  + RC C+ T QG IHL++++ +K  +P P C + E
Sbjct: 15  LLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQG-IHLKNIQSVKVKSPGPHCAQTE 73

Query: 63  IIATLKNGVQTCLNPDSADVKELIKKWEK 91
           +IATLKNG + CLNP S  VK++I+K  K
Sbjct: 74  VIATLKNGQKACLNPASPMVKKIIEKMLK 102


>gi|149999382 small inducible cytokine B10 precursor [Homo
          sapiens]
          Length = 98

 Score = 69.3 bits (168), Expect = 7e-13
 Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 12 IILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATL-KNG 70
          +I L L G+QG P+ R  RC+CIS +   ++ +SL+ L+    S  C ++EIIAT+ K G
Sbjct: 11 LIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATMKKKG 70

Query: 71 VQTCLNPDSADVKELIKKWEKQVSQK 96
           + CLNP+S  +K L+K   K+ S++
Sbjct: 71 EKRCLNPESKAIKNLLKAVSKERSKR 96


>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
          Length = 107

 Score = 68.2 bits (165), Expect = 2e-12
 Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 5/86 (5%)

Query: 7  LFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIE 62
          L  + ++LL+L+       G  VV + RC C+ T QG IHL++++ +   +P P C + E
Sbjct: 15 LLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQG-IHLKNIQSVNVRSPGPHCAQTE 73

Query: 63 IIATLKNGVQTCLNPDSADVKELIKK 88
          +IATLKNG + CLNP S  V+++I+K
Sbjct: 74 VIATLKNGKKACLNPASPMVQKIIEK 99


>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
          Length = 107

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 7  LFLLGIILLVLIGV----QGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIE 62
          L  + ++LL+L+       G  V  + RC C+ T QG IH ++++ +   +P P C + E
Sbjct: 15 LLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQG-IHPKNIQSVNVKSPGPHCAQTE 73

Query: 63 IIATLKNGVQTCLNPDSADVKELIKK 88
          +IATLKNG + CLNP S  VK++I+K
Sbjct: 74 VIATLKNGRKACLNPASPIVKKIIEK 99


>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
           sapiens]
          Length = 114

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 10/89 (11%)

Query: 9   LLGIILLVLIGVQGTPVVRKG---------RCSCISTNQGTIHLQSLKDLKQFAPSPSCE 59
           L  +++L+L+  Q  P+   G         RC C+ T QG +H + + +L+ FA  P C 
Sbjct: 18  LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG-VHPKMISNLQVFAIGPQCS 76

Query: 60  KIEIIATLKNGVQTCLNPDSADVKELIKK 88
           K+E++A+LKNG + CL+P++  +K++I+K
Sbjct: 77  KVEVVASLKNGKEICLDPEAPFLKKVIQK 105


>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
          Length = 94

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 1  MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK 60
          M   G+   L +IL   + VQG P+ ++GRC CI      + +  ++      PS +C+K
Sbjct: 1  MSVKGMAIALAVILCATV-VQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDK 59

Query: 61 IEIIATLK-NGVQTCLNPDSADVKELIKKWEKQ 92
          IE+I TLK N  Q CLNP S   + +IKK E++
Sbjct: 60 IEVIITLKENKGQRCLNPKSKQARLIIKKVERK 92


>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
          Length = 128

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 23/59 (38%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 30  RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKK 88
           RC CI T  G IH ++++ L+       C ++E+IATLK+G + CL+PD+  +K++++K
Sbjct: 62  RCMCIKTTSG-IHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQK 119


>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
           chemotactic protein 2) [Homo sapiens]
          Length = 114

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 25  VVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKE 84
           V+ + RC+C+      ++ +++  L+ F   P C K+E++A+LKNG Q CL+P++  +K+
Sbjct: 43  VLTELRCTCLRVTL-RVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKK 101

Query: 85  LIKK 88
           +I+K
Sbjct: 102 VIQK 105


>gi|10834978 interleukin 8 precursor [Homo sapiens]
          Length = 99

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 30 RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKW 89
          RC CI T     H + +K+L+     P C   EII  L +G + CL+P    V+ +++K+
Sbjct: 33 RCQCIKTYSKPFHPKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKF 92

Query: 90 EKQ 92
           K+
Sbjct: 93 LKR 95


>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
           factor 1) isoform gamma [Homo sapiens]
          Length = 119

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 14/120 (11%)

Query: 6   VLFLLGIILLVLIGVQGTPVVRKGRCSC--ISTNQGTIHLQSLKDLKQFAPSPSCEKIEI 63
           V+ +L ++L  L    G PV    RC C    ++    +++ LK L     +P+C  ++I
Sbjct: 5   VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILN----TPNCA-LQI 59

Query: 64  IATLKNGV-QTCLNPDSADVKELIKK------WEKQVSQKKKQKNGKKHQKKKVLKVRKS 116
           +A LKN   Q C++P    ++E ++K       E++V +K+K    K+ +K+K  + RK+
Sbjct: 60  VARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 119


>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
          [Homo sapiens]
          Length = 101

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 3  KSGVLFLLGIILLVLIGVQGTPVVRKG--RCSCISTNQGTI--HLQSLKDLKQFAPSPSC 58
          + G+LFL  ++L +++          G  +C C+ T       H+ SL+ +K     P C
Sbjct: 11 RPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKA---GPHC 67

Query: 59 EKIEIIATLKNGVQTCLNPDSADVKELIKK 88
             ++IATLKNG + CL+  +   K++IKK
Sbjct: 68 PTAQLIATLKNGRKICLDLQAPLYKKIIKK 97


>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
          Length = 104

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 6   VLFLLGIILLVLIGVQGTPVVRKG--RCSCISTNQGTI--HLQSLKDLKQFAPSPSCEKI 61
           +LFL  ++L V++          G  +C C+ T       H+ SL+ +K     P C   
Sbjct: 17  MLFLALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKA---GPHCPTA 73

Query: 62  EIIATLKNGVQTCLNPDSADVKELIKK 88
           ++IATLKNG + CL+  +   K++IK+
Sbjct: 74  QLIATLKNGRKICLDLQALLYKKIIKE 100


>gi|239752449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           KE  KK +K+  +KKK+K  KK +KKK  K RK +R R++K
Sbjct: 110 KEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRK 150



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 77  PDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           P   + KE  K+ +K+  +KKK+K  KK +KKK  K +K +R R++K
Sbjct: 100 PQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRK 146



 Score = 37.7 bits (86), Expect = 0.002
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           KE  KK +K+  +KKK+K  KK +KKK  K +K +R R++K
Sbjct: 108 KEKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRK 148



 Score = 37.0 bits (84), Expect = 0.004
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           K+  KK +K+  +KKK+K  KK +KKK  + RK +R R+KK
Sbjct: 114 KKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKK 154



 Score = 36.2 bits (82), Expect = 0.007
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           K+  KK +K+  +KKK+K  KK +KKK  + RK +R R++K
Sbjct: 112 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRK 152



 Score = 35.4 bits (80), Expect = 0.011
 Identities = 17/43 (39%), Positives = 29/43 (67%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKKTT 125
           K+  KK +K+  +KKK+K  K+ +K+K  + RK +R ++KK T
Sbjct: 120 KKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKT 162



 Score = 34.7 bits (78), Expect = 0.019
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           K+  KK +K+  +KKK+K  KK +K+K  + RK ++ R+KK
Sbjct: 118 KKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKK 158



 Score = 33.5 bits (75), Expect = 0.043
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           K+  KK +K+  +KKK+K  KK +K+K  + RK +R +++K
Sbjct: 116 KKKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRK 156



 Score = 33.1 bits (74), Expect = 0.056
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 85  LIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           L ++ EK+  +K+K+K  KK +KKK  K +K ++ ++KK
Sbjct: 99  LPQREEKKEKEKEKKKKKKKKKKKKKKKKKKKKKKKKKK 137



 Score = 31.6 bits (70), Expect = 0.16
 Identities = 14/41 (34%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           K+  KK +K+  +KKK+K  KK ++K+  K ++ ++ ++KK
Sbjct: 117 KKKKKKKKKKKKKKKKKKKKKKKKRKRKRKRKRKRKKKRKK 157



 Score = 26.9 bits (58), Expect = 4.0
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQ 121
           K+  KK +K+  +K+K+K  +K ++KK  K +K +   +
Sbjct: 127 KKKKKKKKKKKKKKRKRKRKRKRKRKKKRKKKKKKTGNE 165


>gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo
           sapiens]
          Length = 161

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 3/39 (7%)

Query: 87  KKWEKQVSQKKKQKNGKKHQKKKVLKVRKS-QRSRQKKT 124
           KK +K  SQ+K  KNGK   +KK++KV+K  QR+ +KKT
Sbjct: 32  KKEKKNSSQQKTNKNGK--VEKKIIKVKKPLQRNSRKKT 68


>gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo
           sapiens]
          Length = 161

 Score = 34.3 bits (77), Expect = 0.025
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 3/39 (7%)

Query: 87  KKWEKQVSQKKKQKNGKKHQKKKVLKVRKS-QRSRQKKT 124
           KK +K  SQ+K  KNGK   +KK++KV+K  QR+ +KKT
Sbjct: 32  KKEKKNSSQQKTNKNGK--VEKKIIKVKKPLQRNSRKKT 68


>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
          Length = 126

 Score = 33.9 bits (76), Expect = 0.033
 Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 31  CSCISTNQGTIHLQSLKDLKQFAPSPS-CEKIEIIATLKNGVQTCLNPDSADVKELIKK 88
           C C+ +  G      + ++  +  S + C K+++IA LK+G +  L+P++  +K++++K
Sbjct: 59  CVCVKSASGIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQK 117


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 33.9 bits (76), Expect = 0.033
 Identities = 15/41 (36%), Positives = 28/41 (68%)

Query: 83  KELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           KE +K+ EK+  +K+K+K  +K ++KK  +  K +R R+K+
Sbjct: 693 KEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKR 733



 Score = 28.1 bits (61), Expect = 1.8
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 77  PDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           P S +VK+ +KK E +   KKK+K   + ++K   K +  ++ + K+
Sbjct: 516 PSSVEVKKKLKK-ELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKE 561



 Score = 27.7 bits (60), Expect = 2.3
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 81  DVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           D KE  KK EK+  +K+K++  +K +++K  K ++  +  + K
Sbjct: 704 DKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIK 746


>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal
          cell-derived factor 1) isoform beta [Homo sapiens]
          Length = 93

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 6  VLFLLGIILLVLIGVQGTPVVRKGRCSC--ISTNQGTIHLQSLKDLKQFAPSPSCEKIEI 63
          V+ +L ++L  L    G PV    RC C    ++    +++ LK L     +P+C  ++I
Sbjct: 5  VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILN----TPNC-ALQI 59

Query: 64 IATLK-NGVQTCLNPDSADVKELIKK 88
          +A LK N  Q C++P    ++E ++K
Sbjct: 60 VARLKNNNRQVCIDPKLKWIQEYLEK 85


>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
          cell-derived factor 1) isoform alpha [Homo sapiens]
          Length = 89

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 6  VLFLLGIILLVLIGVQGTPVVRKGRCSC--ISTNQGTIHLQSLKDLKQFAPSPSCEKIEI 63
          V+ +L ++L  L    G PV    RC C    ++    +++ LK L     +P+C  ++I
Sbjct: 5  VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILN----TPNC-ALQI 59

Query: 64 IATLK-NGVQTCLNPDSADVKELIKK 88
          +A LK N  Q C++P    ++E ++K
Sbjct: 60 VARLKNNNRQVCIDPKLKWIQEYLEK 85


>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
          Length = 859

 Score = 33.5 bits (75), Expect = 0.043
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 71  VQTCLNPDSADVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKKTT 125
           V    NP S   KE  K+  + VS++++++ GK    KK +K++KS+    + T+
Sbjct: 59  VSPAKNPSSLFSKEAPKRKAQAVSEEEEEEEGKSSSPKKKIKLKKSKNVATEGTS 113


>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
          Length = 894

 Score = 33.1 bits (74), Expect = 0.056
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 81  DVKELIKKWEKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           DV E I+++ ++ S KKK+K  K  +K K  K +KS++ + +K
Sbjct: 62  DVNERIEQFSQEHSVKKKKKKDKHSKKAKKEKKKKSKKQKYEK 104


>gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]
          Length = 856

 Score = 32.3 bits (72), Expect = 0.095
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 49  LKQFAPSPSCEKIEII--ATLKNGVQTC-------------LNPDSADVKELIKKWEKQV 93
           L+ F P PSCE ++I    TL   ++                N  S   K L+++++  V
Sbjct: 474 LQSFPPLPSCEILDINDEQTLPRLIEALEKRHNLRQMMIDEFNKQSNAFKALLQEFDNAV 533

Query: 94  SQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
             K+    GK ++K+K++  +K +  R +K
Sbjct: 534 LSKENHMQGKLNEKEKMISGQKLEIERLEK 563


>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
          Length = 960

 Score = 32.3 bits (72), Expect = 0.095
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 49  LKQFAPSPSCEKIEII--ATLKNGVQTC-------------LNPDSADVKELIKKWEKQV 93
           L+ F P PSCE ++I    TL   ++                N  S   K L+++++  V
Sbjct: 474 LQSFPPLPSCEILDINDEQTLPRLIEALEKRHNLRQMMIDEFNKQSNAFKALLQEFDNAV 533

Query: 94  SQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
             K+    GK ++K+K++  +K +  R +K
Sbjct: 534 LSKENHMQGKLNEKEKMISGQKLEIERLEK 563


>gi|117414154 sodium channel associated protein 2 isoform b [Homo
           sapiens]
          Length = 939

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 22/94 (23%), Positives = 45/94 (47%)

Query: 30  RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKW 89
           R  C   +  T  ++ LKD  Q          E I  ++   Q  L+  S+ + E+++K 
Sbjct: 720 RIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKL 779

Query: 90  EKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           E+   +K+K K   K ++ ++ ++RK+  +  +K
Sbjct: 780 ERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 813


>gi|117414162 sodium channel associated protein 2 isoform a [Homo
           sapiens]
          Length = 1032

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 22/94 (23%), Positives = 45/94 (47%)

Query: 30  RCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKW 89
           R  C   +  T  ++ LKD  Q          E I  ++   Q  L+  S+ + E+++K 
Sbjct: 813 RIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKL 872

Query: 90  EKQVSQKKKQKNGKKHQKKKVLKVRKSQRSRQKK 123
           E+   +K+K K   K ++ ++ ++RK+  +  +K
Sbjct: 873 ERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRK 906


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 38   QGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKK 97
            +G++  Q  KD       P  E  + + T++ G Q+  NP S   K+   K +K   +K+
Sbjct: 1329 KGSLGSQGAKD------EPEEELQKGMGTVEGGDQS--NPKSKKEKKKSDKRKKDKEKKE 1380

Query: 98   KQKNGKKHQKKKVLKVRKSQRSRQKKT 124
            K+K  KK   K      + ++ ++KKT
Sbjct: 1381 KKKKAKKASTKDSESPSQKKKKKKKKT 1407


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 38   QGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKK 97
            +G++  Q  KD       P  E  + + T++ G Q+  NP S   K+   K +K   +K+
Sbjct: 1368 KGSLGSQGAKD------EPEEELQKGMGTVEGGDQS--NPKSKKEKKKSDKRKKDKEKKE 1419

Query: 98   KQKNGKKHQKKKVLKVRKSQRSRQKKT 124
            K+K  KK   K      + ++ ++KKT
Sbjct: 1420 KKKKAKKASTKDSESPSQKKKKKKKKT 1446


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 38   QGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKK 97
            +G++  Q  KD       P  E  + + T++ G Q+  NP S   K+   K +K   +K+
Sbjct: 1405 KGSLGSQGAKD------EPEEELQKGMGTVEGGDQS--NPKSKKEKKKSDKRKKDKEKKE 1456

Query: 98   KQKNGKKHQKKKVLKVRKSQRSRQKKT 124
            K+K  KK   K      + ++ ++KKT
Sbjct: 1457 KKKKAKKASTKDSESPSQKKKKKKKKT 1483


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 38   QGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKELIKKWEKQVSQKK 97
            +G++  Q  KD       P  E  + + T++ G Q+  NP S   K+   K +K   +K+
Sbjct: 1328 KGSLGSQGAKD------EPEEELQKGMGTVEGGDQS--NPKSKKEKKKSDKRKKDKEKKE 1379

Query: 98   KQKNGKKHQKKKVLKVRKSQRSRQKKT 124
            K+K  KK   K      + ++ ++KKT
Sbjct: 1380 KKKKAKKASTKDSESPSQKKKKKKKKT 1406


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,775,494
Number of Sequences: 37866
Number of extensions: 207220
Number of successful extensions: 2460
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1741
Number of HSP's gapped (non-prelim): 573
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.