Search of human proteins with 4504561

Search of human proteins with 4504561

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504561 intercellular adhesion molecule 4 isoform 1
precursor [Homo sapiens]
         (271 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor...   550   e-157
gi|12545402 intercellular adhesion molecule 4 isoform 2 precurso...   478   e-135
gi|85068578 intercellular adhesion molecule 4 isoform 3 precurso...   274   7e-74
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s...    91   1e-18
gi|153082722 intercellular adhesion molecule 2 precursor [Homo s...    78   7e-15
gi|153082719 intercellular adhesion molecule 2 precursor [Homo s...    78   7e-15
gi|153082699 intercellular adhesion molecule 2 precursor [Homo s...    78   7e-15
gi|153082686 intercellular adhesion molecule 2 precursor [Homo s...    78   7e-15
gi|153082696 intercellular adhesion molecule 2 precursor [Homo s...    78   7e-15
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s...    73   2e-13
gi|167466198 intercellular adhesion molecule 1 precursor [Homo s...    54   1e-07
gi|4507875 vascular cell adhesion molecule 1 isoform a precursor...    53   3e-07
gi|18201909 vascular cell adhesion molecule 1 isoform b precurso...    45   9e-05
gi|25121980 dispatched B [Homo sapiens]                                37   0.018
gi|239757369 PREDICTED: hypothetical protein [Homo sapiens]            35   0.053
gi|239751917 PREDICTED: hypothetical protein [Homo sapiens]            35   0.053
gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo ...    35   0.053
gi|19923084 polycystin-1L1 [Homo sapiens]                              33   0.20 
gi|153281158 dual specificity phosphatase 8 [Homo sapiens]             32   0.45 
gi|18780285 mucosal vascular addressin cell adhesion molecule 1 ...    32   0.77 
gi|38787970 tensin like C1 domain containing phosphatase isoform...    31   1.0  
gi|38787957 tensin like C1 domain containing phosphatase isoform...    31   1.0  
gi|38787941 tensin like C1 domain containing phosphatase isoform...    31   1.0  
gi|24797074 major histocompatibility complex, class II, DP alpha...    30   1.7  
gi|109633022 mucosal vascular addressin cell adhesion molecule 1...    30   2.2  
gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precurs...    30   2.9  
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        30   2.9  
gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precurs...    29   3.8  
gi|157311649 neogenin homolog 1 [Homo sapiens]                         29   3.8  
gi|20270311 solute carrier family 25, member 46 [Homo sapiens]         29   3.8  

>gi|4504561 intercellular adhesion molecule 4 isoform 1 precursor
           [Homo sapiens]
          Length = 271

 Score =  550 bits (1418), Expect = e-157
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
           MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60

Query: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
           PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120

Query: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
           TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL
Sbjct: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180

Query: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA 240
           ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA
Sbjct: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA 240

Query: 241 LASGSIAALVGILLTVGAAYLCKCLAMKSQA 271
           LASGSIAALVGILLTVGAAYLCKCLAMKSQA
Sbjct: 241 LASGSIAALVGILLTVGAAYLCKCLAMKSQA 271


>gi|12545402 intercellular adhesion molecule 4 isoform 2 precursor
           [Homo sapiens]
          Length = 237

 Score =  478 bits (1229), Expect = e-135
 Identities = 233/236 (98%), Positives = 234/236 (99%)

Query: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
           MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60

Query: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
           PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120

Query: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180
           TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL
Sbjct: 121 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 180

Query: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSP 236
           ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLML  +P
Sbjct: 181 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAP 236


>gi|85068578 intercellular adhesion molecule 4 isoform 3 precursor
           [Homo sapiens]
          Length = 272

 Score =  274 bits (700), Expect = 7e-74
 Identities = 132/138 (95%), Positives = 134/138 (97%)

Query: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60
           MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ
Sbjct: 1   MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 60

Query: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120
           PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK
Sbjct: 61  PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 120

Query: 121 TRWATSRITAYKPPHSVI 138
           TRWATSRITAY  P  ++
Sbjct: 121 TRWATSRITAYSVPGGLL 138


>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
           sapiens]
          Length = 924

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 71/208 (34%), Positives = 95/208 (45%), Gaps = 16/208 (7%)

Query: 47  PFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRA 106
           PFW  + P    V+ G S+ LNCS +CP+P+   L T LR+  T RG  W++ QL+D+R 
Sbjct: 33  PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIRE 92

Query: 107 WSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEP-----PVLKGRKYTLRCHVTQVFPV 161
             +   C   CA +T  A   I  ++ P  V L P     PV  G  +TL C V    P 
Sbjct: 93  PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPV--GENFTLSCRVPGAGPR 150

Query: 162 GYLVVTLRHGSRVIYSESLERFTGLD--LANVTLTYEFAAGPRDFWQPVICHARLNL--D 217
             L +TL  G++ +   S   F G         LT    A   D      C A L+L   
Sbjct: 151 ASLTLTLLRGAQELIRRS---FAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPH 207

Query: 218 GL-VVRNSSAPITL-MLAWSPAPTALAS 243
           GL +  NSSAP  L   + SP    LA+
Sbjct: 208 GLGLFENSSAPRELRTFSLSPDAPRLAA 235


>gi|153082722 intercellular adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 275

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 41  PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
           P      F V + P+ +AV+P  S+++NCS +C QP+   L T L +        W  Y 
Sbjct: 20  PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79

Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
           + ++ +  ++  C  TC+GK     S ++ Y+PP  VI  L+P  V  G+ +T+ C V  
Sbjct: 80  VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138

Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
           V P+  L + L  G+  ++ E+  +         T T+   A   D  +   C A L+L 
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197

Query: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
              G +    SAP  L +    + + +    I  +V +LL++    +  C
Sbjct: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245


>gi|153082719 intercellular adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 275

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 41  PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
           P      F V + P+ +AV+P  S+++NCS +C QP+   L T L +        W  Y 
Sbjct: 20  PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79

Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
           + ++ +  ++  C  TC+GK     S ++ Y+PP  VI  L+P  V  G+ +T+ C V  
Sbjct: 80  VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138

Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
           V P+  L + L  G+  ++ E+  +         T T+   A   D  +   C A L+L 
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197

Query: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
              G +    SAP  L +    + + +    I  +V +LL++    +  C
Sbjct: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245


>gi|153082699 intercellular adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 275

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 41  PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
           P      F V + P+ +AV+P  S+++NCS +C QP+   L T L +        W  Y 
Sbjct: 20  PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79

Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
           + ++ +  ++  C  TC+GK     S ++ Y+PP  VI  L+P  V  G+ +T+ C V  
Sbjct: 80  VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138

Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
           V P+  L + L  G+  ++ E+  +         T T+   A   D  +   C A L+L 
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197

Query: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
              G +    SAP  L +    + + +    I  +V +LL++    +  C
Sbjct: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245


>gi|153082686 intercellular adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 275

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 41  PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
           P      F V + P+ +AV+P  S+++NCS +C QP+   L T L +        W  Y 
Sbjct: 20  PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79

Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
           + ++ +  ++  C  TC+GK     S ++ Y+PP  VI  L+P  V  G+ +T+ C V  
Sbjct: 80  VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138

Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
           V P+  L + L  G+  ++ E+  +         T T+   A   D  +   C A L+L 
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197

Query: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
              G +    SAP  L +    + + +    I  +V +LL++    +  C
Sbjct: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245


>gi|153082696 intercellular adhesion molecule 2 precursor [Homo
           sapiens]
          Length = 275

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 10/230 (4%)

Query: 41  PSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ 100
           P      F V + P+ +AV+P  S+++NCS +C QP+   L T L +        W  Y 
Sbjct: 20  PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYL 79

Query: 101 LLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQ 157
           + ++ +  ++  C  TC+GK     S ++ Y+PP  VI  L+P  V  G+ +T+ C V  
Sbjct: 80  VSNI-SHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 138

Query: 158 VFPVGYLVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL- 216
           V P+  L + L  G+  ++ E+  +         T T+   A   D  +   C A L+L 
Sbjct: 139 VEPLDSLTLFLFRGNETLHYETFGKAAPAP-QEATATFNSTADREDGHRNFSCLAVLDLM 197

Query: 217 --DGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAYLCKC 264
              G +    SAP  L +    + + +    I  +V +LL++    +  C
Sbjct: 198 SRGGNIFHKHSAPKMLEIYEPVSDSQMV--IIVTVVSVLLSLFVTSVLLC 245


>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
           sapiens]
          Length = 547

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 64/199 (32%), Positives = 88/199 (44%), Gaps = 21/199 (10%)

Query: 39  LAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVS 98
           L P      F +R+ P+   +  G S+ +NCS  CP  +  +L T L +     G GW +
Sbjct: 23  LTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSSEKIALETSLSKELVASGMGWAA 82

Query: 99  YQLLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEP-----PVLKGRKYTLRC 153
           + L +V   S +  C V C G     +S IT Y+ P  V L P     PV  G+ +TLRC
Sbjct: 83  FNLSNVTGNSRIL-CSVYCNGSQITGSSNITVYRLPERVELAPLPPWQPV--GQNFTLRC 139

Query: 154 HVTQVFPVGYLVVTLRHGSRVIYSESLERFTGL-DLANVTLTYEFAAGPRDFWQPVICHA 212
            V    P   L V L     + + E L R   + + A VT T    A   D   P  C  
Sbjct: 140 QVEDGSPRTSLTVVL-----LRWEEELSRQPAVEEPAEVTAT--VLASRDDHGAPFSCRT 192

Query: 213 RLNLD----GLVVRNSSAP 227
            L++     GL V N+SAP
Sbjct: 193 ELDMQPQGLGLFV-NTSAP 210


>gi|167466198 intercellular adhesion molecule 1 precursor [Homo
           sapiens]
          Length = 532

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 55/177 (31%), Positives = 72/177 (40%), Gaps = 34/177 (19%)

Query: 8   SLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQL 67
           +LL  L A +PG G+A                    TSV      SP  V +  G SV +
Sbjct: 12  ALLVLLGALFPGPGNAQ-------------------TSV------SPSKVILPRGGSVLV 46

Query: 68  NCSNSCPQPQNSSLRTPL-RQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATS 126
            CS SC QP+   + TPL ++   L G     Y+L +V+   S   C   C      A +
Sbjct: 47  TCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQPMCYSNCPDGQSTAKT 105

Query: 127 RITAYKPPHSVILEP-----PVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSE 178
            +T Y  P  V L P     PV  G+  TLRC V    P   L V L  G + +  E
Sbjct: 106 FLTVYWTPERVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE 160


>gi|4507875 vascular cell adhesion molecule 1 isoform a precursor
           [Homo sapiens]
          Length = 739

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 15/212 (7%)

Query: 47  PFWVRMSP-EFVAVQPGKSVQLNCS-NSCPQPQNS---SLRTPLRQGKTLRGPGWVSYQL 101
           PF V +SP   +A Q G SV L CS   C  P  S    + +PL  GK +R  G  S   
Sbjct: 312 PFTVEISPGPRIAAQIGDSVMLTCSVMGCESPSFSWRTQIDSPL-SGK-VRSEGTNSTLT 369

Query: 102 LDVRAWSSLAH--CLVTCAGKTRWATSRITAYKPPHSVILEPP--VLKGRKYTLRCHVTQ 157
           L   ++ +     C VTC  K      ++  Y  P    +E    ++ G   T+ C V  
Sbjct: 370 LSPVSFENEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSGGLVNGSSVTVSCKVPS 429

Query: 158 VFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNL 216
           V+P+  L + L  G  ++ + E LE      L N +L   F     D  + ++C A+L++
Sbjct: 430 VYPLDRLEIELLKGETILENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHI 489

Query: 217 DGLVVRNSSAPITLMLAWSPAP---TALASGS 245
           D +         T  L  + AP   T L S S
Sbjct: 490 DDMEFEPKQRQSTQTLYVNVAPRDTTVLVSPS 521



 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 10/182 (5%)

Query: 45  SVPFWVRMSPEF-VAVQPGKSVQLNCSNS-CPQP---QNSSLRTPLRQGKTLRGPGWVSY 99
           S  F +  +PE     Q G SV L CS + C  P     + + +PL  GK        + 
Sbjct: 22  SQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTL 80

Query: 100 QLLDVRAWSSLAH-CLVTCAGKTRWATSRITAYKPPHS--VILEPPVLKGRKYTLRCHVT 156
            +  V   +  ++ C  TC  +      ++  Y  P    + L  P+  G+  T++C V 
Sbjct: 81  TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 140

Query: 157 QVFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLN 215
            V+P   L + L  G  ++ S E LE      L   +L   F     D  + ++C A+L+
Sbjct: 141 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 200

Query: 216 LD 217
           +D
Sbjct: 201 ID 202


>gi|18201909 vascular cell adhesion molecule 1 isoform b precursor
           [Homo sapiens]
          Length = 647

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 10/182 (5%)

Query: 45  SVPFWVRMSPEF-VAVQPGKSVQLNCSNS-CPQP---QNSSLRTPLRQGKTLRGPGWVSY 99
           S  F +  +PE     Q G SV L CS + C  P     + + +PL  GK        + 
Sbjct: 22  SQAFKIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTL 80

Query: 100 QLLDVRAWSSLAH-CLVTCAGKTRWATSRITAYKPPHS--VILEPPVLKGRKYTLRCHVT 156
            +  V   +  ++ C  TC  +      ++  Y  P    + L  P+  G+  T++C V 
Sbjct: 81  TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 140

Query: 157 QVFPVGYLVVTLRHGSRVIYS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLN 215
            V+P   L + L  G  ++ S E LE      L   +L   F     D  + ++C A+L+
Sbjct: 141 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 200

Query: 216 LD 217
           +D
Sbjct: 201 ID 202



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 7/194 (3%)

Query: 59  VQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCL--VT 116
           +Q G SV + CS+             L  G      G  +  L+ +R   S  +    V 
Sbjct: 236 LQEGGSVTMTCSSEGLPAPEIFWSKKLDNGNLQHLSGNATLTLIAMRMEDSGIYVCEGVN 295

Query: 117 CAGKTRWATSRIT-AYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVI 175
             GK R     I  A+     + +   ++ G   T+ C V  V+P+  L + L  G  ++
Sbjct: 296 LIGKNRKEVELIVQAFPRDPEIEMSGGLVNGSSVTVSCKVPSVYPLDRLEIELLKGETIL 355

Query: 176 YS-ESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAW 234
            + E LE      L N +L   F     D  + ++C A+L++D +         T  L  
Sbjct: 356 ENIEFLEDTDMKSLENKSLEMTFIPTIEDTGKALVCQAKLHIDDMEFEPKQRQSTQTLYV 415

Query: 235 SPAP---TALASGS 245
           + AP   T L S S
Sbjct: 416 NVAPRDTTVLVSPS 429


>gi|25121980 dispatched B [Homo sapiens]
          Length = 1401

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 19 GVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS-NSCPQPQ 77
          G G A G   +  Q P+G PLAP G S       S +  AV P  S + +CS +SCP   
Sbjct: 11 GSGPAPGPGPEGEQRPEGEPLAPDGGSPD-----STQTKAVPPEASPERSCSLHSCPLED 65

Query: 78 NSSLRTPLRQGKTLRGPG 95
           SS   P     TL+  G
Sbjct: 66 PSSSSGPPPTTSTLQPVG 83


>gi|239757369 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)

Query: 6   PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
           P  L   L+ A  G+G  + R   R +  Q P+G  L   APS    P  FW + +    
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165

Query: 54  ----PEFVAVQPGKSVQL 67
               PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183


>gi|239751917 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)

Query: 6   PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
           P  L   L+ A  G+G  + R   R +  Q P+G  L   APS    P  FW + +    
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165

Query: 54  ----PEFVAVQPGKSVQL 67
               PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183


>gi|239746407 PREDICTED: hypothetical protein XP_002343705 [Homo
           sapiens]
          Length = 188

 Score = 35.4 bits (80), Expect = 0.053
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 16/78 (20%)

Query: 6   PLSLLFFLAAAYPGVGSALGR---RTKRAQSPKGSPL---APSGTSVP--FWVRMS---- 53
           P  L   L+ A  G+G  + R   R +  Q P+G  L   APS    P  FW + +    
Sbjct: 106 PRLLFLLLSGARRGIGKGVPRGRLRRQLRQHPRGGGLLAGAPSALLPPPAFWNKAASLWI 165

Query: 54  ----PEFVAVQPGKSVQL 67
               PEF++VQPG SV+L
Sbjct: 166 SFHQPEFLSVQPGGSVRL 183


>gi|19923084 polycystin-1L1 [Homo sapiens]
          Length = 2849

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 8    SLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQL 67
            SL   L   YPG G+   R         G      G+SV   +++ P  +   P     L
Sbjct: 2341 SLTTLLDGLYPG-GTPSARVPGAQPGALGGKCYLIGSSVIRQLKVFPRHLCKPPRPFSAL 2399

Query: 68   ------NCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQ---LLDVRAWSSLAHCLVTCA 118
                   CS     P+N  L  P  Q  TL GPG    +   +L +    + AH  ++  
Sbjct: 2400 IEDSIPTCSPEVGGPENPYLIDPENQNVTLNGPGGCGTREDCVLSLGRTRTEAHTALSRL 2459

Query: 119  GKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLV 165
              + W   R T     H  +  PP       +LR    ++ P G LV
Sbjct: 2460 RASMW-IDRSTRAVSVHFTLYNPPTQLFTSVSLR---VEILPTGSLV 2502


>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
          Length = 625

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 12/78 (15%)

Query: 60  QPGKSVQLNCSNSCPQP----QNSSLRTPLRQGKTLRGPGWV--SYQLLDVRAWSS---L 110
           Q G S  LN SNSCP+P    ++  +R P+      +   W+  S + +D    SS   +
Sbjct: 184 QNGISYVLNASNSCPKPDFICESRFMRVPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVI 243

Query: 111 AHCLVTCAGKTRWATSRI 128
            HCL   AG +R AT  I
Sbjct: 244 VHCL---AGISRSATIAI 258


>gi|18780285 mucosal vascular addressin cell adhesion molecule 1
           isoform b precursor [Homo sapiens]
          Length = 295

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 55/231 (23%), Positives = 86/231 (37%), Gaps = 20/231 (8%)

Query: 47  PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
           P  V      VAV  G S QL C  +C       Q   L T L   ++  G   ++ +  
Sbjct: 25  PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84

Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPV- 161
            + A +    C+ +C G+T   T ++  Y  P  + + P  L      + C   +V PV 
Sbjct: 85  SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPVD 143

Query: 162 -GYLVVTLRHGSRVI---------YSESLERFTGLDLANVTLTYEFAAGPRDFWQP--VI 209
              L  +L  G + +           E  E   G +     +T  +   P     P  + 
Sbjct: 144 PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALY 203

Query: 210 CHARLNLDGLVVRNSSAPITLMLAWSPAPTALASGSIAALVGILLTVGAAY 260
           C A + L GL + +  A      A    P AL + S  A++G+LL     Y
Sbjct: 204 CQATMRLPGLELSHRQAIPASKPAGDQLPAALWTSS--AVLGLLLLALPTY 252


>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
           [Homo sapiens]
          Length = 1285

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 33  SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
           SP GSPL P  + +P W+  SPE     P  +  L  S       N   + PL + + L 
Sbjct: 902 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 956

Query: 93  GPG 95
           GPG
Sbjct: 957 GPG 959


>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
            [Homo sapiens]
          Length = 1409

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 33   SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
            SP GSPL P  + +P W+  SPE     P  +  L  S       N   + PL + + L 
Sbjct: 1026 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1080

Query: 93   GPG 95
            GPG
Sbjct: 1081 GPG 1083


>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
            [Homo sapiens]
          Length = 1419

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 33   SPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLR 92
            SP GSPL P  + +P W+  SPE     P  +  L  S       N   + PL + + L 
Sbjct: 1036 SPDGSPLTPVPSQMP-WLVASPEPPQSSPTPAFPLAAS----YDTNGLSQPPLPEKRHLP 1090

Query: 93   GPG 95
            GPG
Sbjct: 1091 GPG 1093


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 133 PPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERF-TGLDLANV 191
           P  +V  + PV  G+  TL CH+ + FP    V  L +G  V    +   F    D +  
Sbjct: 118 PEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFH 177

Query: 192 TLTY-EFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTALASGSIAALV 250
              Y  F     DF+   + H    LD  ++++  A   + +  +      A G +  LV
Sbjct: 178 KFHYLTFVPSAEDFYDCRVEH--WGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLV 235

Query: 251 GILLTVGAAYLCKCL 265
           GI+  VG   + K L
Sbjct: 236 GII--VGTVLIIKSL 248


>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
           isoform a precursor [Homo sapiens]
          Length = 382

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 47  PFWVRMSPEFVAVQPGKSVQLNCSNSC----PQPQNSSLRTPLRQGKTLRGPGWVSYQLL 102
           P  V      VAV  G S QL C  +C       Q   L T L   ++  G   ++ +  
Sbjct: 25  PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNA 84

Query: 103 DVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPV 161
            + A +    C+ +C G+T   T ++  Y  P  + + P  L      + C   +V PV
Sbjct: 85  SLSA-AGTRVCVGSCGGRTFQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPV 142


>gi|11128023 protocadherin gamma subfamily C, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 944

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 95  GWVSYQLLDVRAWSSLAHCLVTC----AGKTRWATSRITAYKPPHSVILEPPVLKGRKYT 150
           G + Y  + +R   S +HC  TC    +  + +   R  + + P ++ LEP  ++ R  T
Sbjct: 755 GTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNT 814

Query: 151 LRCHVTQVFP 160
           LR    Q  P
Sbjct: 815 LRERSQQAPP 824


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 23   ALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLR 82
            AL RR++   S KG   +P G+S       SPE     P        S S P+P+  S R
Sbjct: 1631 ALPRRSRSGSSSKGRGPSPEGSSS---TESSPEH---PPKSRTARRGSRSSPEPKTKS-R 1683

Query: 83   TPLRQGKTLRGP 94
            TP R+  +   P
Sbjct: 1684 TPPRRRSSRSSP 1695


>gi|14277685 protocadherin gamma subfamily C, 5 isoform 2 precursor
           [Homo sapiens]
          Length = 878

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 95  GWVSYQLLDVRAWSSLAHCLVTC----AGKTRWATSRITAYKPPHSVILEPPVLKGRKYT 150
           G + Y  + +R   S +HC  TC    +  + +   R  + + P ++ LEP  ++ R  T
Sbjct: 755 GTLKYMEVTLRPTDSQSHCYRTCFSPASDGSDFTFLRPLSVQQPTALALEPDAIRSRSNT 814

Query: 151 LR 152
           LR
Sbjct: 815 LR 816


>gi|157311649 neogenin homolog 1 [Homo sapiens]
          Length = 1461

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 5  FPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKS 64
          F L  L  L    PG  +A      R+ S   SP A   T  PF+  + P       G S
Sbjct: 16 FWLYCLLLLGRRAPGAAAA------RSGSAPQSPGASIRTFTPFYFLVEPVDTLSVRGSS 69

Query: 65 VQLNCS-NSCPQPQ 77
          V LNCS  S P P+
Sbjct: 70 VILNCSAYSEPSPK 83


>gi|20270311 solute carrier family 25, member 46 [Homo sapiens]
          Length = 418

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 166 VTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQP-----VICHARLNLDGLV 220
           + LR   +V Y       T   + N+  ++    GPR  W+      ++    L  +G++
Sbjct: 121 IVLRRQCQVNYHAQHYHLTPFTVINIMYSFNKTQGPRALWKGMGSTFIVQGVTLGAEGII 180

Query: 221 VRNSSAPITLMLAWSP 236
              +  P  ++  WSP
Sbjct: 181 SEFTPLPREVLHKWSP 196


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,187,815
Number of Sequences: 37866
Number of extensions: 533360
Number of successful extensions: 1640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1610
Number of HSP's gapped (non-prelim): 47
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.