Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288459 Sequence: fasta or formatted (188aa) NCBI GI: 239751917
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {188aa} PREDICTED: hypothetical protein XP_002343705
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         21           2
 C cysteine            0.5          1           1
 D aspartate           1.6          3           2
 E glutamate           2.1          4           1
 F phenylalanine       2.7          5           1
 G glycine            14.4         27           3
 H histidine           1.6          3           1
 I isoleucine          2.7          5           1
 K lysine              1.6          3           1
 L leucine            18.1         34           3
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            11.2         21           3
 Q glutamine           4.3          8           1
 R arginine           13.3         25           2
 S serine              4.8          9           1
 T threonine           0.0          0           0
 V valine              8.0         15           2
 W tryptophan          1.1          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293453          1.000   PREDICTED: hypothetical protein 
LOC100288459          1.000   PREDICTED: hypothetical protein XP_002343705 
ICAM4                 0.029   intercellular adhesion molecule 4 isoform 3 precurso...
ICAM4                 0.029   intercellular adhesion molecule 4 isoform 1 precursor...
ICAM4                 0.029   intercellular adhesion molecule 4 isoform 2 precurso...
LOC100130667          0.029   PREDICTED: hypothetical protein 
LOC100130667          0.029   PREDICTED: hypothetical protein 
LOC100130667          0.029   PREDICTED: hypothetical protein 
GJD4                  0.023   connexin40.1 
LOC100292688          0.023   PREDICTED: hypothetical protein 
SHC2                  0.017   SHC (Src homology 2 domain containing) transforming...
LOC100289978          0.014   PREDICTED: hypothetical protein XP_002348035 
SAC3D1                0.014   SAC3 domain containing 1 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
LOC100290783          0.014   PREDICTED: hypothetical protein XP_002347614 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
LOC100288864          0.014   PREDICTED: hypothetical protein XP_002343435 
LOC100129571          0.014   PREDICTED: similar to hCG1646049 
C15orf23              0.014   TRAF4 associated factor 1 isoform c 
C15orf23              0.014   TRAF4 associated factor 1 isoform b 
C15orf23              0.014   TRAF4 associated factor 1 isoform a 
BUD13                 0.014   BUD13 homolog isoform 2 
BUD13                 0.014   BUD13 homolog isoform 1 
LOC100293812          0.011   PREDICTED: hypothetical protein 
ZNF831                0.011   zinc finger protein 831 
VAX1                  0.011   ventral anterior homeobox 1 isoform a 
LOC100290231          0.011   PREDICTED: hypothetical protein XP_002346778 
LOC100287558          0.011   PREDICTED: hypothetical protein XP_002343325 
LOC100289372          0.011   PREDICTED: hypothetical protein XP_002342624 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press