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Search of human proteins with 4504519
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504519 heat shock 27kDa protein 2 [Homo sapiens] 373 e-104
gi|4503057 crystallin, alpha B [Homo sapiens] 113 8e-26
gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Ho... 104 5e-23
gi|4504517 heat shock protein beta-1 [Homo sapiens] 100 7e-22
gi|4503055 crystallin, alpha A [Homo sapiens] 94 6e-20
gi|5453688 heat shock 27kDa protein 3 [Homo sapiens] 72 3e-13
gi|7657146 heat shock 22kDa protein 8 [Homo sapiens] 63 2e-10
gi|7657202 cardiovascular heat shock protein [Homo sapiens] 58 5e-09
gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens] 33 0.18
gi|26051273 voltage-gated potassium channel, subfamily H, member... 32 0.39
gi|7657178 transmembrane protein 5 [Homo sapiens] 32 0.39
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens] 29 2.6
gi|54607077 ankyrin repeat domain 57 [Homo sapiens] 28 3.3
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens] 28 5.7
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 28 5.7
gi|189011544 ubiquitously transcribed tetratricopeptide repeat, ... 27 7.4
gi|109689723 abl interactor 2 [Homo sapiens] 27 7.4
gi|94400932 syntaxin 5 [Homo sapiens] 27 7.4
gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-l... 27 9.7
gi|239745130 PREDICTED: similar to Golgin subfamily A member 8-l... 27 9.7
gi|113425119 PREDICTED: similar to golgi autoantigen, golgin sub... 27 9.7
gi|239745114 PREDICTED: Golgin subfamily A member 8-like protein... 27 9.7
gi|239745111 PREDICTED: Golgin subfamily A member 8-like protein... 27 9.7
gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-l... 27 9.7
gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens] 27 9.7
gi|145199237 transcription elongation factor B polypeptide 3 bin... 27 9.7
gi|8923458 COMM domain containing 8 [Homo sapiens] 27 9.7
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 27 9.7
>gi|4504519 heat shock 27kDa protein 2 [Homo sapiens]
Length = 182
Score = 373 bits (958), Expect = e-104
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS 60
MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS
Sbjct: 1 MSGRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGS 60
Query: 61 RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT 120
RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT
Sbjct: 61 RAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRT 120
Query: 121 YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV 180
YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV
Sbjct: 121 YVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIV 180
Query: 181 EP 182
EP
Sbjct: 181 EP 182
>gi|4503057 crystallin, alpha B [Homo sapiens]
Length = 175
Score = 113 bits (283), Expect = 8e-26
Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
Query: 16 YEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGYYVRPRA-APAGEGSRAGASELRLSEGK 73
+ F +PSRL +Q FGE LL ++ T T +Y+RP + A G SE+RL + +
Sbjct: 15 FPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDR 74
Query: 74 FQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVR 133
F LDV HF+P+E+ V+ + +++EV +H +R D HGF+SREF R Y +PADVDP +
Sbjct: 75 FSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTIT 134
Query: 134 AALSHDGILNLEAPR 148
++LS DG+L + PR
Sbjct: 135 SSLSSDGVLTVNGPR 149
>gi|21389433 heat shock protein, alpha-crystallin-related, B6 [Homo
sapiens]
Length = 160
Score = 104 bits (259), Expect = 5e-23
Identities = 59/128 (46%), Positives = 79/128 (61%), Gaps = 8/128 (6%)
Query: 21 PSRLGEQRFGEGLLPEEI--LTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFL 78
P RL +QRFGEGLL E+ L PT YY+R AP+ +++ G F L
Sbjct: 25 PGRLFDQRFGEGLLEAELAALCPTTLAPYYLR---APS---VALPVAQVPTDPGHFSVLL 78
Query: 79 DVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSH 138
DV HF+P+E+ V+ V +EV ARH +R D HGFV+REF R Y LP VDP V +ALS
Sbjct: 79 DVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREFHRRYRLPPGVDPAAVTSALSP 138
Query: 139 DGILNLEA 146
+G+L+++A
Sbjct: 139 EGVLSIQA 146
>gi|4504517 heat shock protein beta-1 [Homo sapiens]
Length = 205
Score = 100 bits (249), Expect = 7e-22
Identities = 71/182 (39%), Positives = 100/182 (54%), Gaps = 28/182 (15%)
Query: 22 SRLGEQRFGEGLLPEEI---LTPTLYHGYYVRPRAAPAGEG--------SRA-------G 63
SRL +Q FG LPEE L + + GY VRP A E SRA G
Sbjct: 26 SRLFDQAFGLPRLPEEWSQWLGGSSWPGY-VRPLPPAAIESPAVAAPAYSRALSRQLSSG 84
Query: 64 ASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVL 123
SE+R + +++ LDV+HF PDE+TV+T D ++E++ +H +R D HG++SR F R Y L
Sbjct: 85 VSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQDEHGYISRCFTRKYTL 144
Query: 124 PADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISL-------LPAPPDPEEEEE 176
P VDP +V ++LS +G L +EAP L T+ NE+ I + L P + +E
Sbjct: 145 PPGVDPTQVSSSLSPEGTLTVEAPM--PKLATQSNEITIPVTFESRAQLGGPEAAKSDET 202
Query: 177 AA 178
AA
Sbjct: 203 AA 204
>gi|4503055 crystallin, alpha A [Homo sapiens]
Length = 173
Score = 94.0 bits (232), Expect = 6e-20
Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 21 PSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELRLSEGKFQAFLDV 80
PSRL +Q FGEGL ++L P L R + +G SE+R KF FLDV
Sbjct: 19 PSRLFDQFFGEGLFEYDLL-PFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDV 77
Query: 81 SHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDG 140
HF+P+++TV+ D+ +E+ +H +R D HG++SREF R Y LP++VD + +LS DG
Sbjct: 78 KHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADG 137
Query: 141 ILNLEAPRGGRHLD 154
+L P+ LD
Sbjct: 138 MLTFCGPKIQTGLD 151
>gi|5453688 heat shock 27kDa protein 3 [Homo sapiens]
Length = 150
Score = 71.6 bits (174), Expect = 3e-13
Identities = 37/96 (38%), Positives = 54/96 (56%)
Query: 50 RPRAAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQRLDR 109
+ RAA + A + R + FQ LDV F P+++ ++T + L + A+H R+D
Sbjct: 47 KTRAAQSPPVDSAAETPPREGKSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDE 106
Query: 110 HGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLE 145
HGF+SR F R Y LP V+ + A L HDGIL +E
Sbjct: 107 HGFISRSFTRQYKLPDGVEIKDLSAVLCHDGILVVE 142
>gi|7657146 heat shock 22kDa protein 8 [Homo sapiens]
Length = 196
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 78 LDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHGFVSREFCRTYVLPADVDPWRVRAALS 137
++V F P+E+ V+T D +EVS +H ++ G VS+ F + LPA+VDP V A+LS
Sbjct: 100 VNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLS 159
Query: 138 HDGILNLEAPR 148
+G+L +EAP+
Sbjct: 160 PEGLLIIEAPQ 170
>gi|7657202 cardiovascular heat shock protein [Homo sapiens]
Length = 170
Score = 57.8 bits (138), Expect = 5e-09
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 46 GYYVRPRAAPAGEGSR-AGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHP 104
G ++RP + P +R GA ++ ++ +DV F+P+++ V T +N +EV A
Sbjct: 53 GSFMRPHSEPLAFPARPGGAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA--- 109
Query: 105 QRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTE 156
++L G V F LP DVDP V +AL DG L + R RH TE
Sbjct: 110 EKLAADGTVMNTFAHKCQLPEDVDPTSVTSALREDGSLTI---RARRHPHTE 158
>gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens]
Length = 250
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 78 LDVSHFTPDEVTVRTVDNLLEVSARHPQRLDRHG---FVSREFCRTYVLPADVDPWRVRA 134
++V F PD+V VR D + VSA R D G + C+ + LP VD V
Sbjct: 129 VNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTY 188
Query: 135 ALSHDGILNLEAP 147
+ + +E+P
Sbjct: 189 SYGLGSCVKIESP 201
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 31.6 bits (70), Expect = 0.39
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 53 AAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQ 105
AAPAG+ SR GA R +G+ + + +S EV D L E + P+
Sbjct: 2 AAPAGKASRTGALRPRAQKGRVRRAVRISSLVAQEVLSLGADVLPEYKLQAPR 54
>gi|7657178 transmembrane protein 5 [Homo sapiens]
Length = 443
Score = 31.6 bits (70), Expect = 0.39
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 44 YHGYYVRPRAAPAG--EGSRAGASELRLSEGKFQAFLDVSHFTPDE 87
YH ++ R R APAG G R GA+ R G+ Q+ L+ + P E
Sbjct: 25 YHVFFGRRRQAPAGSPRGLRKGAAPARERRGREQSTLESEEWNPWE 70
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 8 HAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASEL 67
H H A + + + G +L E L L H AAPAG+G AG E+
Sbjct: 132 HGHAAPEDGSHRQVAAVARVAGGHHVLGVEHLLGELGHRERPVLLAAPAGQGREAGHEEV 191
Query: 68 RLSEG 72
+ EG
Sbjct: 192 QAREG 196
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 8 HAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASEL 67
H H A + + + G +L E L L H AAPAG+G AG E+
Sbjct: 132 HGHAAPEDGSHRQVAAVARVAGGHHVLGVEHLLGELGHRERPVLLAAPAGQGREAGHEEV 191
Query: 68 RLSEG 72
+ EG
Sbjct: 192 QAREG 196
>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
Length = 590
Score = 28.9 bits (63), Expect = 2.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 2 SGRSVPHAHPATAEYEFANPSRLGEQRFGE----GLLPEEILTPTLYHGYYVRP 51
SG P +HPAT EF + R G + GL P PTL H ++ P
Sbjct: 478 SGDEDPSSHPATPRPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPP 531
>gi|54607077 ankyrin repeat domain 57 [Homo sapiens]
Length = 525
Score = 28.5 bits (62), Expect = 3.3
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 130 WRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISLLPAPPDPEEEEEAAIVE 181
W AAL + +L A RGGR L E+ + + L P+ A E
Sbjct: 7 WGPEAALGPEAVLRFLAERGGRALHAELVQHFRGALGGEPEQRARARAHFKE 58
>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
Length = 3144
Score = 27.7 bits (60), Expect = 5.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 122 VLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVY 161
+L D+DP + AL++DGI L GR ++ E++
Sbjct: 3065 ILSEDIDPHKNFVALNYDGICYLGGFEYGRKVNIVTQEIF 3104
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 27.7 bits (60), Expect = 5.7
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 3 GRSVPHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRA 62
G+SV H P+T+E + + PS Q G +L ++ + H + P A S+
Sbjct: 248 GKSVRHPKPSTSESKQSTPSE--TQTVGAHVL--QVCSEHTSHSAHPEP-ALNLTLASKE 302
Query: 63 GASEL--RLSEGKFQAFLDVSHFTPDEV 88
S+L +L +GK +A LD+ + P V
Sbjct: 303 IPSKLEAQLGQGKGEAKLDLKYVPPRRV 330
>gi|189011544 ubiquitously transcribed tetratricopeptide repeat, X
chromosome [Homo sapiens]
Length = 1401
Score = 27.3 bits (59), Expect = 7.4
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 9 AHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASELR 68
A A+ E E A+PS E+R G L + +H R +A G+ R S +
Sbjct: 27 AGKASGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKAL-LGKAVRCYESLIL 85
Query: 69 LSEGKFQA--FLDVSHF 83
+EGK ++ F + HF
Sbjct: 86 KAEGKVESDFFCQLGHF 102
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 27.3 bits (59), Expect = 7.4
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 166 PAPPDPEEEEEAAIVE 181
P PP+ EEEEAA+VE
Sbjct: 382 PPPPEDYEEEEAAVVE 397
>gi|94400932 syntaxin 5 [Homo sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 120 TYVLPADVDPWRVRAALSHDGILNLEAPRGGRHLDTEVNEVYISL 164
TY++ D++ + A D + + + GRHL T N + +SL
Sbjct: 136 TYIIKQDINSLNKQIAQLQD-FVRAKGSQSGRHLQTHSNTIVVSL 179
>gi|113425137 PREDICTED: similar to Golgin subfamily A member 8-like
protein 2 isoform 3 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 428 GGEHLDSEGEEAPRPMPSVPEDPESRE 454
>gi|239745130 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 428 GGEHLDSEGEEAPRPMPSVPEDPESRE 454
>gi|113425119 PREDICTED: similar to golgi autoantigen, golgin
subfamily a, 8E isoform 2 [Homo sapiens]
Length = 631
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 427 GGEHLDSEGEEAPQPMPSVPEDPESRE 453
>gi|239745114 PREDICTED: Golgin subfamily A member 8-like protein 3
[Homo sapiens]
Length = 580
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 376 GGEHLDSEGEEAPRPMPSVPEDPESRE 402
>gi|239745111 PREDICTED: Golgin subfamily A member 8-like protein 3
isoform 1 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 428 GGEHLDSEGEEAPRPMPSVPEDPESRE 454
>gi|239745099 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 632
Score = 26.9 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 149 GGRHLDTEVNEVYISLLPAPPDPEEEE 175
GG HLD+E E + P DPE E
Sbjct: 428 GGEHLDSEGEEAPQPMPSVPEDPESRE 454
>gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens]
Length = 646
Score = 26.9 bits (58), Expect = 9.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 166 PAPPDPEEEEEAAI 179
P PP PEEEEE A+
Sbjct: 603 PPPPPPEEEEEGAV 616
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 26.9 bits (58), Expect = 9.7
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 7 PHAHPATAEYEFANPSRLGEQRFGEGLLPEEILTPTLYHGYYVRPRAAPAGEGSRAGASE 66
P+A P E A P GLL + GY P AAPA GS+ +
Sbjct: 132 PNASPTVGPDEDAFPLAFDYSPGSHGLLSPDA-------GYQPTPLAAPAEPGSKYSLAS 184
Query: 67 LRLSEGK 73
L +G+
Sbjct: 185 LDRGQGR 191
>gi|8923458 COMM domain containing 8 [Homo sapiens]
Length = 183
Score = 26.9 bits (58), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 130 WRVRAALSHDGILNLEAPRGGRHLDTEVN 158
W+V+ ALS D I L P HLD + N
Sbjct: 122 WQVKLALSSDKIAALRMPLLSLHLDVKEN 150
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 26.9 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 123 LPADVDPWRVRAALSHDGILNLEAPRG 149
LP + P ++ ++ GIL+LEAP+G
Sbjct: 1076 LPRGLPPTSLQVPAAYPGILSLEAPKG 1102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,167,837
Number of Sequences: 37866
Number of extensions: 390533
Number of successful extensions: 1028
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 35
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.