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Search of human proteins with 4503955
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503955 biogenesis of lysosome-related organelles complex-1,
subunit 1 [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503955 biogenesis of lysosome-related organelles complex-1, ... 247 2e-66
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens] 28 1.4
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 28 1.4
gi|24430175 pantothenate kinase 2 isoform 2 [Homo sapiens] 28 1.8
gi|24430167 pantothenate kinase 2 isoform 2 [Homo sapiens] 28 1.8
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 28 1.8
gi|42794779 myosin 18A isoform b [Homo sapiens] 28 1.8
gi|28416946 myosin 18A isoform a [Homo sapiens] 28 1.8
gi|13375789 pantothenate kinase 3 [Homo sapiens] 28 1.8
gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ... 28 1.8
gi|38569484 kinesin family member 21A [Homo sapiens] 28 2.3
gi|156119615 myosin IXA [Homo sapiens] 27 5.2
gi|4826724 zygin 1 isoform 1 [Homo sapiens] 27 5.2
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 27 5.2
gi|148529025 pleckstrin homology domain containing, family G (wi... 27 5.2
gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens] 26 6.8
gi|11386139 phospholipase C beta 3 [Homo sapiens] 26 6.8
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 26 6.8
gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens] 26 6.8
gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens] 26 6.8
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 26 8.9
gi|92859701 myosin VI [Homo sapiens] 26 8.9
gi|4504805 basic leucine zipper nuclear factor 1 [Homo sapiens] 26 8.9
gi|209969700 coiled-coil domain containing 124 [Homo sapiens] 26 8.9
gi|19923969 coiled-coil domain containing 124 [Homo sapiens] 26 8.9
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 26 8.9
gi|31340735 zinc finger protein 445 [Homo sapiens] 26 8.9
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 26 8.9
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 26 8.9
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 26 8.9
>gi|4503955 biogenesis of lysosome-related organelles complex-1,
subunit 1 [Homo sapiens]
Length = 125
Score = 247 bits (630), Expect = 2e-66
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEV 60
MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEV
Sbjct: 1 MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEV 60
Query: 61 KTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQL 120
KTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQL
Sbjct: 61 KTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQL 120
Query: 121 QSAPS 125
QSAPS
Sbjct: 121 QSAPS 125
>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
Length = 432
Score = 28.5 bits (62), Expect = 1.4
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 3 SRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKT 62
S L A+ R ELQ ++IT LV+HL V + ++ NQR L
Sbjct: 106 SSSLSSAAARPRRRPELQRVAVEKSITEVAQELTELVEHL-VDIVRSLQNQRPLSESGPD 164
Query: 63 LQVQAAQFAKQTGQWIGMVE----NFNQALKEIGDVENWARSIELDMRTIAT---ALEYV 115
++ A +G + M + A +I D+ + I+ ++ T A E
Sbjct: 165 NELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQ 224
Query: 116 YKGQLQSAPS 125
+G+L APS
Sbjct: 225 MQGELLEAPS 234
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 28.5 bits (62), Expect = 1.4
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 3 SRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKT 62
+RLL E + E++E +E+ RRE E L +AQ +R E ++
Sbjct: 480 TRLLAEKRRLAREQREKEERERRE--------QEELERQKREELAQRVAEERTTRREEES 531
Query: 63 LQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMR 106
+++A Q ++ Q E +AL+E + E R E + R
Sbjct: 532 RRLEAEQAREKEEQLQRQAE--ERALREREEAERAQRQKEEEAR 573
>gi|24430175 pantothenate kinase 2 isoform 2 [Homo sapiens]
Length = 279
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 85 NQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQS 122
N+ + ++ V N+ R + MR +A AL+Y KGQL++
Sbjct: 220 NENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKA 257
>gi|24430167 pantothenate kinase 2 isoform 2 [Homo sapiens]
Length = 279
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 85 NQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQS 122
N+ + ++ V N+ R + MR +A AL+Y KGQL++
Sbjct: 220 NENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKA 257
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 85 NQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQS 122
N+ + ++ V N+ R + MR +A AL+Y KGQL++
Sbjct: 511 NENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKA 548
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 2 LSRLLKEHQAKQNERKELQE-----KRRREAITAATCLTEALVDHLNVGVAQAYMNQRKL 56
LSRL +E QN +E QE ++ +A A A ++ L + +A +++L
Sbjct: 1734 LSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQEL 1793
Query: 57 DHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALE 113
+++ LQ Q +F +Q+ +V ++E+ + R+ + ++A+ L+
Sbjct: 1794 QEKLQALQSQ-VEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQVKRLESLASRLK 1849
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 2 LSRLLKEHQAKQNERKELQE-----KRRREAITAATCLTEALVDHLNVGVAQAYMNQRKL 56
LSRL +E QN +E QE ++ +A A A ++ L + +A +++L
Sbjct: 1734 LSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQEL 1793
Query: 57 DHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALE 113
+++ LQ Q +F +Q+ +V ++E+ + R+ + ++A+ L+
Sbjct: 1794 QEKLQALQSQ-VEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQVKRLESLASRLK 1849
>gi|13375789 pantothenate kinase 3 [Homo sapiens]
Length = 370
Score = 28.1 bits (61), Expect = 1.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 85 NQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQS 122
N+ + + V N+ R L M+ +A AL+Y KGQL++
Sbjct: 311 NEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKA 348
>gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 1
[Homo sapiens]
Length = 621
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 10 QAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQ 69
+AK+ E+ E +EK+R+ + AA E + + QA + +++ D + K ++ + +
Sbjct: 300 EAKRKEQ-EAKEKQRQAELEAARLAKEKEEEEVR---QQALLAKKEKDIQKKAIKKERQK 355
Query: 70 FAKQTGQWIGMVENFNQALKEIGDVENWARSIEL 103
W +N + +K + +VE +EL
Sbjct: 356 LRNSCKTWNHFSDNEAERVKMMEEVEKLCDRLEL 389
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 19/63 (30%)
Query: 4 RLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTL 63
RL+K+ + +Q + + + +R RE +AQ +QRK DH+++ L
Sbjct: 759 RLMKQMKEEQEKARLTESRRNRE-------------------IAQLKKDQRKRDHQLRLL 799
Query: 64 QVQ 66
+ Q
Sbjct: 800 EAQ 802
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 26 EAITA----ATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQV 65
EA+T A L AL D + + A +N + L+H KTL +
Sbjct: 490 EAVTVRNSMAKSLYSALFDWIVFRINHALLNSKDLEHNTKTLSI 533
>gi|4826724 zygin 1 isoform 1 [Homo sapiens]
Length = 392
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 5 LLKEHQAKQNERKELQEKRRRE 26
+L E Q KQ E++EL +KRR+E
Sbjct: 273 VLIEVQNKQKEQRELMKKRRKE 294
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 26.6 bits (57), Expect = 5.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 4 RLLKEHQAKQNERKELQEKRRRE 26
R +E + K+ E KEL+EK RRE
Sbjct: 366 RAKEEAKKKKEEEKELKEKERRE 388
>gi|148529025 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4B [Homo sapiens]
Length = 1271
Score = 26.6 bits (57), Expect = 5.2
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 16 RKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDH--EVKTLQ--------V 65
R+EL + R+ + AAT L + + + ++ V + ++L+H E+ +L
Sbjct: 418 REELGTEDSRDTLEAATSLYDRVDEEVHRLVLTSNNRLQQLEHLRELASLLEGNDQQSCQ 477
Query: 66 QAAQFAKQTGQWI-GMVENFNQALKEI--------GDVENWARSIEL 103
+ Q AK+ Q MV++F + L + G++ W RS EL
Sbjct: 478 KGLQLAKENPQRTEEMVQDFRRGLSAVVSQAECREGELARWTRSSEL 524
>gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens]
Length = 210
Score = 26.2 bits (56), Expect = 6.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 3 SRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKL 56
S L A+ R ELQ ++IT LV+HL V + ++ NQR L
Sbjct: 106 SSSLSSAAARPRRRPELQRVAVEKSITEVAQELTELVEHL-VDIVRSLQNQRPL 158
>gi|11386139 phospholipase C beta 3 [Homo sapiens]
Length = 1234
Score = 26.2 bits (56), Expect = 6.8
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 5 LLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQR 54
L+K ++ + +EL++K +R+A+T LT L+D G+AQA R
Sbjct: 963 LVKLRSRQERDLRELRKKHQRKAVT----LTRRLLD----GLAQAQAEGR 1004
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 26.2 bits (56), Expect = 6.8
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 2 LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61
L++L E + ER+E +EK ++ AIT A + E L + A ++ L+ V+
Sbjct: 1783 LAQLSGEVEEAAQERREAEEKAKK-AITDAAMMAEELKKEQDTS-AHLERMKKTLEQTVR 1840
Query: 62 TLQV---QAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117
LQ +A Q A + G+ Q K V ++ + + A AL+ V K
Sbjct: 1841 ELQARLEEAEQAALRGGK--------KQVQKLEAKVRELEAELDAEQKKHAEALKGVRK 1891
>gi|209529726 PHD finger protein 21B isoform 2 [Homo sapiens]
Length = 489
Score = 26.2 bits (56), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 RLLKEHQAKQNERKELQEKRRREAITAATCL 34
+LL+ QNE ++L+E+ RR A CL
Sbjct: 390 KLLQRGSELQNEHQQLEERDRRLASAVQKCL 420
>gi|19923937 PHD finger protein 21B isoform 1 [Homo sapiens]
Length = 531
Score = 26.2 bits (56), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 RLLKEHQAKQNERKELQEKRRREAITAATCL 34
+LL+ QNE ++L+E+ RR A CL
Sbjct: 432 KLLQRGSELQNEHQQLEERDRRLASAVQKCL 462
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 25.8 bits (55), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 4 RLLKEHQAKQNERKELQEKRRREA 27
+L KEH ++ ERKE Q K+ EA
Sbjct: 221 KLKKEHDREELERKEKQYKKEVEA 244
>gi|92859701 myosin VI [Homo sapiens]
Length = 1285
Score = 25.8 bits (55), Expect = 8.9
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 4 RLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTL 63
R ++E K+ +R+E EKRRR+ E + Q ++K + + K +
Sbjct: 927 RRIQEEMEKERKRREEDEKRRRKEEEERRMKLE-----MEAKRKQEEEERKKREDDEKRI 981
Query: 64 QVQA-AQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYV 115
Q + AQ A+Q + E+ QA+ +E R EL +R + E +
Sbjct: 982 QAEVEAQLARQKEE-----ESQQQAV-----LEQERRDRELALRIAQSEAELI 1024
>gi|4504805 basic leucine zipper nuclear factor 1 [Homo sapiens]
Length = 400
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 7 KEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQ 66
++H + Q+ K+ + LTE ++ V + + + + H++ +
Sbjct: 42 RKHHSLQSPWKKAVPSESPGVLQLGKMLTEKAME---VKAVRILVPKAAITHDIPNKNTK 98
Query: 67 AAQFAKQTGQWIGMVENFNQALKEIGDVEN 96
G+++G E + KE+ +V+N
Sbjct: 99 VKSLGHHKGEFLGQSEGVIEPNKELSEVKN 128
>gi|209969700 coiled-coil domain containing 124 [Homo sapiens]
Length = 223
Score = 25.8 bits (55), Expect = 8.9
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 8 EHQAKQNERKELQEKRRREAI---TAATCLTEALVDHLNVGVAQAYMNQRKL-------- 56
+H ++ +RKE +EKRR + + L E L G A K+
Sbjct: 44 KHVMRKEQRKEEKEKRRLDQLERKKETQRLLEEEDSKLKGGKAPRVATSSKVTRAQIEDT 103
Query: 57 ---DHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALE 113
DH+++ A+ AK + + + EN N+ + E G VE AR+IE + ++ A E
Sbjct: 104 LRRDHQLREAP-DTAEKAKSHLE-VPLEENVNRRVLEEGSVE--ARTIEDAIAVLSVAEE 159
>gi|19923969 coiled-coil domain containing 124 [Homo sapiens]
Length = 223
Score = 25.8 bits (55), Expect = 8.9
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 8 EHQAKQNERKELQEKRRREAI---TAATCLTEALVDHLNVGVAQAYMNQRKL-------- 56
+H ++ +RKE +EKRR + + L E L G A K+
Sbjct: 44 KHVMRKEQRKEEKEKRRLDQLERKKETQRLLEEEDSKLKGGKAPRVATSSKVTRAQIEDT 103
Query: 57 ---DHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALE 113
DH+++ A+ AK + + + EN N+ + E G VE AR+IE + ++ A E
Sbjct: 104 LRRDHQLREAP-DTAEKAKSHLE-VPLEENVNRRVLEEGSVE--ARTIEDAIAVLSVAEE 159
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 45 GVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELD 104
GV+ + + + + L+ Q K+T + +++FN LKE+ + N
Sbjct: 577 GVSLLHKKSLEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKELRETYN-------- 628
Query: 105 MRTIATALEYVYK 117
T ALE +YK
Sbjct: 629 --TQQLALEQLYK 639
>gi|31340735 zinc finger protein 445 [Homo sapiens]
Length = 1031
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 40 DHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVEN 96
D L + +NQ L+ E +TL V + A + IG+ E+F Q ++ EN
Sbjct: 312 DDLQSKTNKFILNQEPLE-EAETLAVSSGCPATSVSEGIGLRESFQQKSRQKDQCEN 367
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 25.8 bits (55), Expect = 8.9
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 2 LSRLLKEHQAKQNERKELQEKRRR---EAITAATCLTEALVDHL---NVGVAQAYMNQRK 55
+SR+ KEHQ Q++ +E+ E + + + L E L HL + + +
Sbjct: 1492 ISRIEKEHQVLQDQLQEVYENYEQIKLKGLEETRDLEEKLKRHLEENKISKTELDWFLQD 1551
Query: 56 LDHEVKTLQVQAAQF---AKQTGQWIGMVENFNQALKEIGDVENWARSIELDMR-TIATA 111
L+ E+K Q + + K + I V N ++ + D + + LD I+
Sbjct: 1552 LEREIKKWQQEKKEIQERLKSLKKKIKKVSNASEMYTQKNDGKEKEHELHLDQSLEISNT 1611
Query: 112 L--------EYVYKGQ 119
L EY+ KG+
Sbjct: 1612 LTNEKMKIEEYIKKGK 1627
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 25.8 bits (55), Expect = 8.9
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 2 LSRLLKEHQAKQNERKELQEKRRR---EAITAATCLTEALVDHL---NVGVAQAYMNQRK 55
+SR+ KEHQ Q++ +E+ E + + + L E L HL + + +
Sbjct: 1492 ISRIEKEHQVLQDQLQEVYENYEQIKLKGLEETRDLEEKLKRHLEENKISKTELDWFLQD 1551
Query: 56 LDHEVKTLQVQAAQF---AKQTGQWIGMVENFNQALKEIGDVENWARSIELDMR-TIATA 111
L+ E+K Q + + K + I V N ++ + D + + LD I+
Sbjct: 1552 LEREIKKWQQEKKEIQERLKSLKKKIKKVSNASEMYTQKNDGKEKEHELHLDQSLEISNT 1611
Query: 112 L--------EYVYKGQ 119
L EY+ KG+
Sbjct: 1612 LTNEKMKIEEYIKKGK 1627
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 25.8 bits (55), Expect = 8.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 5 LLKEHQAKQNERKELQEKRRR 25
L KE +AK K+LQE+RRR
Sbjct: 161 LEKEEKAKALREKQLQERRRR 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,717,769
Number of Sequences: 37866
Number of extensions: 119722
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 795
Number of HSP's gapped (non-prelim): 38
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.