Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4502671
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502671 CD3E antigen, epsilon polypeptide precursor [Homo
sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502671 CD3E antigen, epsilon polypeptide precursor [Homo sap... 436 e-123
gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens] 44 1e-04
gi|126517478 peroxidasin homolog-like [Homo sapiens] 40 0.001
gi|209977117 unc-5 homolog D [Homo sapiens] 33 0.13
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 32 0.38
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor... 32 0.38
gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo ... 32 0.50
gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens] 30 1.1
gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase... 30 1.9
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 29 2.5
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 3.2
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 3.2
gi|110349715 titin isoform N2-B [Homo sapiens] 29 3.2
gi|7657277 killer cell immunoglobulin-like receptor, two domains... 29 3.2
gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens] 29 3.2
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 29 3.2
gi|6912474 killer cell immunoglobulin-like receptor, two domains... 28 4.2
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 4.2
gi|5454048 semaphorin 3C [Homo sapiens] 28 4.2
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 28 4.2
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 28 4.2
gi|110349719 titin isoform N2-A [Homo sapiens] 28 5.5
gi|47132583 cAMP-dependent protein kinase, regulatory subunit al... 28 5.5
gi|47132581 cAMP-dependent protein kinase, regulatory subunit al... 28 5.5
gi|4506063 cAMP-dependent protein kinase, regulatory subunit alp... 28 5.5
gi|110611923 killer cell immunoglobulin-like receptor, two domai... 28 5.5
gi|15147240 brother of CDO [Homo sapiens] 28 5.5
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 28 5.5
gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo ... 28 7.2
gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo ... 28 7.2
>gi|4502671 CD3E antigen, epsilon polypeptide precursor [Homo
sapiens]
Length = 207
Score = 436 bits (1122), Expect = e-123
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQ 60
MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQ
Sbjct: 1 MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQ 60
Query: 61 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCE 120
HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCE
Sbjct: 61 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCE 120
Query: 121 NCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERP 180
NCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERP
Sbjct: 121 NCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKERP 180
Query: 181 PPVPNPDYEPIRKGQRDLYSGLNQRRI 207
PPVPNPDYEPIRKGQRDLYSGLNQRRI
Sbjct: 181 PPVPNPDYEPIRKGQRDLYSGLNQRRI 207
>gi|4557429 CD3G antigen, gamma polypeptide precursor [Homo sapiens]
Length = 182
Score = 43.5 bits (101), Expect = 1e-04
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 35/169 (20%)
Query: 44 TVILTCPQYPGSEILWQHNDKNIGGDEDDK---NIGSDEDHLSLKEFSELEQSGYYVCYP 100
+V+LTC I W + K IG +DK N+GS+ + G Y C
Sbjct: 41 SVLLTCDA-EAKNITWFKDGKMIGFLTEDKKKWNLGSNAK----------DPRGMYQC-- 87
Query: 101 RGSKPEDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAK 160
+GS+ + +Y R +C+NC+E++ +++ + +I L + VY+
Sbjct: 88 KGSQNKSKPLQVYYR--MCQNCIELNAATISGFLFAEIVSIFVLAVGVYFI--------- 136
Query: 161 PVTRGAGAGGRQRGQNKERPPPVPNPD-YEPIRKGQRDLYSGL--NQRR 206
AG G ++ + ++ +PN Y+P++ + D YS L NQ R
Sbjct: 137 -----AGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR 180
>gi|126517478 peroxidasin homolog-like [Homo sapiens]
Length = 1463
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 8 RVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSI-SGTTVILTCPQY--PGSEILWQHNDK 64
R+ G + SV V ++ N + IT P V + SG TV TC P EI+W HN+
Sbjct: 215 RLHGRAVASVTV--EEFNCQSPRITFEPQDVEVPSGNTVYFTCRAEGNPKPEIIWIHNNH 272
Query: 65 NIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 106
++ ++D + D+ L ++ E +Q G Y C R S E
Sbjct: 273 SLDLEDDTRLNVFDDGTLMIRNTRESDQ-GVYQCMARNSAGE 313
>gi|209977117 unc-5 homolog D [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.13
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 37 KVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 94
+V I G V+ P P +E+ W N++ I ++D+ NI + DH + + L SG
Sbjct: 169 EVPIEGMIVLHCRPPEGVPAAEVEWLKNEEPIDSEQDE-NIDTRADHNLIIRQARLSDSG 227
Query: 95 YYVC 98
Y C
Sbjct: 228 NYTC 231
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.38
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 89 ELEQSGYYVCYPRGSKPEDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLL--- 145
E +G Y C+ + K + + + +V + E+D T+ ++ + + GG++
Sbjct: 122 EFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVD----NTVTLIILAVVGGVIGLL 177
Query: 146 --------LLVYYWSKNRKAKAKPVTRGAGAGGRQRG----QNKERPP 181
L+++ K R+ K + + +G + G + +E+PP
Sbjct: 178 ILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPP 225
>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform 3
[Homo sapiens]
Length = 118
Score = 32.0 bits (71), Expect = 0.38
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 89 ELEQSGYYVCYPRGSKPEDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLL--- 145
E +G Y C+ + K + + + +V + E+D T+ ++ + + GG++
Sbjct: 12 EFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVD----NTVTLIILAVVGGVIGLL 67
Query: 146 --------LLVYYWSKNRKAKAKPVTRGAGAGGRQRG----QNKERPP 181
L+++ K R+ K + + +G + G + +E+PP
Sbjct: 68 ILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPP 115
>gi|4502669 CD3 antigen, delta subunit isoform A precursor [Homo
sapiens]
Length = 171
Score = 31.6 bits (70), Expect = 0.50
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 106 EDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVY 149
+D + + R+C++C+E+D +VA I++ D+ T L L V+
Sbjct: 80 KDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVF 123
>gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]
Length = 5890
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 14 LLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEI 57
L +GV G +GN +M GI + V++ G V L Q G EI
Sbjct: 5480 LPGIGVQGLEGNLQMPGIKSSGCDVNLPGVNVKLPTGQISGPEI 5523
>gi|4505353 heparan glucosaminyl N-deacetylase/N-sulfotransferase 2
[Homo sapiens]
Length = 883
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 142 GGLLLLVYYWSKNRKAKAK-PVTRGAGAGGRQRGQNKERPPPVPNPDYEP 190
G + L YY S + KAK P+ G + G G RPP P P P
Sbjct: 29 GSMGFLAYYVSTSPKAKEPLPLPLGDCSSGGAAGPGPARPPVPPRPPRPP 78
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 61 HNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYY 96
HND + +E DKN+ S E SL+E L ++G Y
Sbjct: 670 HNDSVVSLEEIDKNLKSLERCQSLEEIQRLYEAGDY 705
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 44 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 98
T+ +T P +I W N + D K + +DH + F++LE G Y C
Sbjct: 3667 TLSVTVIGIPKPKIQWFFNGVLLTPSADYKFVFDGDDHSLIILFTKLEDEGEYTC 3721
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 26 EEMGGITQTPYKVSISGT-TVILTCP-QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 83
EE T+ + +S T T+ L C PG+E++W D+ I + + +
Sbjct: 6155 EEEAVFTKNLANIEVSETDTIKLVCEVSKPGAEVIWYKGDEEIIETGRYEILTEGRKRIL 6214
Query: 84 LKEFSELEQSGYYVC 98
+ + + LE +G Y C
Sbjct: 6215 VIQNAHLEDAGNYNC 6229
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 44 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 98
T+ +T P +I W N + D K + +DH + F++LE G Y C
Sbjct: 3600 TLSVTVIGIPKPKIQWFFNGVLLTPSADYKFVFDGDDHSLIILFTKLEDEGEYTC 3654
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 26 EEMGGITQTPYKVSISGT-TVILTCP-QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 83
EE T+ + +S T T+ L C PG+E++W D+ I + + +
Sbjct: 6088 EEEAVFTKNLANIEVSETDTIKLVCEVSKPGAEVIWYKGDEEIIETGRYEILTEGRKRIL 6147
Query: 84 LKEFSELEQSGYYVC 98
+ + + LE +G Y C
Sbjct: 6148 VIQNAHLEDAGNYNC 6162
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 44 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 98
T+ +T P +I W N + D K + +DH + F++LE G Y C
Sbjct: 3475 TLSVTVIGIPKPKIQWFFNGVLLTPSADYKFVFDGDDHSLIILFTKLEDEGEYTC 3529
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 26 EEMGGITQTPYKVSISGT-TVILTCP-QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 83
EE T+ + +S T T+ L C PG+E++W D+ I + + +
Sbjct: 5963 EEEAVFTKNLANIEVSETDTIKLVCEVSKPGAEVIWYKGDEEIIETGRYEILTEGRKRIL 6022
Query: 84 LKEFSELEQSGYYVC 98
+ + + LE +G Y C
Sbjct: 6023 VIQNAHLEDAGNYNC 6037
>gi|7657277 killer cell immunoglobulin-like receptor, two domains,
short cytoplasmic tail, 1 precursor [Homo sapiens]
Length = 304
Score = 28.9 bits (63), Expect = 3.2
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 10 LGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGD 69
+G LL G W +G + P ++ S TVIL C S+++++H + G
Sbjct: 11 VGFFLLQ-GAWPHEGVHRKPSLLAHPGRLVKSEETVILQC----WSDVMFEHFLLHREGM 65
Query: 70 EDD--KNIGSDEDHLSLKEFS----ELEQSGYYVCY 99
+D + IG D +S FS + + +G Y CY
Sbjct: 66 FNDTLRLIGEHHDGVSKANFSISRMKQDLAGTYRCY 101
>gi|4507541 transmembrane 4 superfamily member 6 [Homo sapiens]
Length = 245
Score = 28.9 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 9 VLGLCLLSVGVWGQDGNEEMGGI-----TQTPYKVSISGTTVIL 47
+ G+ LL+VG+WG+ E + T P+ + +GT +IL
Sbjct: 30 ITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIATGTVIIL 73
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 63 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 93
D+N+GG++ +K ++ HLS E EL S
Sbjct: 1582 DENMGGEDKEKKETKEKSHLSTSESGELGSS 1612
>gi|6912474 killer cell immunoglobulin-like receptor, two domains,
short cytoplasmic tail, 3 [Homo sapiens]
Length = 304
Score = 28.5 bits (62), Expect = 4.2
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 18 GVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDD--KNI 75
G W +G + P ++ S TVIL C S+++++H + G +D + I
Sbjct: 18 GAWPHEGFRRKPSLLAHPGRLVKSEETVILQC----WSDVMFEHFLLHREGTFNDTLRLI 73
Query: 76 GSDEDHLSLKEFS----ELEQSGYYVCYPRGSKP 105
G D +S FS + +G Y CY GS P
Sbjct: 74 GEHIDGVSKANFSIGRMRQDLAGTYRCY--GSVP 105
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.5 bits (62), Expect = 4.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 161 PVTRGAGAGGRQRGQNKERPPPVPNPDYEP 190
PV + G G + PPP+P PD P
Sbjct: 2541 PVDKAGGVSGTHHPRPGHDPPPLPQPDPRP 2570
>gi|5454048 semaphorin 3C [Homo sapiens]
Length = 751
Score = 28.5 bits (62), Expect = 4.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 100 PRGSKPEDANFYLYLRARVCENCMEMDVMSVATIVIVDIC--ITGGLLLLVYYWSKNRKA 157
P G+ P DA Y + + ++ +N + +I IC TGGL LV W+ KA
Sbjct: 230 PDGTDPNDAKVYFFFKEKLTDNNRSTKQIH---SMIARICPNDTGGLRSLVNKWTTFLKA 286
Query: 158 K 158
+
Sbjct: 287 R 287
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 28.5 bits (62), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 63 DKNIGGDEDDKNIGSDEDHLS 83
D+ G DED+ + G+DEDH S
Sbjct: 241 DEGSGSDEDENDEGNDEDHSS 261
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 28.5 bits (62), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 63 DKNIGGDEDDKNIGSDEDHLS 83
D+ G DED+ + G+DEDH S
Sbjct: 241 DEGSGSDEDENDEGNDEDHSS 261
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 26 EEMGGITQTPYKVSISGT-TVILTCP-QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 83
EE T+ + +S T T+ L C PG+E++W D+ I + + +
Sbjct: 12460 EEEAVFTKNLANIEVSETDTIKLVCEVSKPGAEVIWYKGDEEIIETGRYEILTEGRKRIL 12519
Query: 84 LKEFSELEQSGYYVC 98
+ + + LE +G Y C
Sbjct: 12520 VIQNAHLEDAGNYNC 12534
>gi|47132583 cAMP-dependent protein kinase, regulatory subunit alpha
1 [Homo sapiens]
Length = 381
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 117 RVCENCMEM-DVMSVATIVIVDICITGG---LLLLVYYWSKNRKAKAKPVTRGAGAGGRQ 172
R CE ++ ++ ++ IV +C + L Y+ + K +AK + AG R
Sbjct: 16 RECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFERLEKEEAKQIQNLQKAGTRT 75
Query: 173 RGQNKERPPPVPNPDYEPIRKGQR 196
+ E PP PN P+ KG+R
Sbjct: 76 DSREDEISPPPPN----PVVKGRR 95
>gi|47132581 cAMP-dependent protein kinase, regulatory subunit alpha
1 [Homo sapiens]
Length = 381
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 117 RVCENCMEM-DVMSVATIVIVDICITGG---LLLLVYYWSKNRKAKAKPVTRGAGAGGRQ 172
R CE ++ ++ ++ IV +C + L Y+ + K +AK + AG R
Sbjct: 16 RECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFERLEKEEAKQIQNLQKAGTRT 75
Query: 173 RGQNKERPPPVPNPDYEPIRKGQR 196
+ E PP PN P+ KG+R
Sbjct: 76 DSREDEISPPPPN----PVVKGRR 95
>gi|4506063 cAMP-dependent protein kinase, regulatory subunit alpha
1 [Homo sapiens]
Length = 381
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 117 RVCENCMEM-DVMSVATIVIVDICITGG---LLLLVYYWSKNRKAKAKPVTRGAGAGGRQ 172
R CE ++ ++ ++ IV +C + L Y+ + K +AK + AG R
Sbjct: 16 RECELYVQKHNIQALLKDSIVQLCTARPERPMAFLREYFERLEKEEAKQIQNLQKAGTRT 75
Query: 173 RGQNKERPPPVPNPDYEPIRKGQR 196
+ E PP PN P+ KG+R
Sbjct: 76 DSREDEISPPPPN----PVVKGRR 95
>gi|110611923 killer cell immunoglobulin-like receptor, two domains,
long cytoplasmic tail, 1 [Homo sapiens]
Length = 348
Score = 28.1 bits (61), Expect = 5.5
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 10 LGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGD 69
+G LL G W +G + P ++ S TVIL C S+++++H + G
Sbjct: 11 VGFFLLQ-GAWPHEGVHRKPSLLAHPGRLVKSEETVILQC----WSDVMFEHFLLHREGM 65
Query: 70 EDD--KNIGSDEDHLSLKEFS----ELEQSGYYVCY 99
+D + IG D +S FS + +G Y CY
Sbjct: 66 FNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 101
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 28.1 bits (61), Expect = 5.5
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 5 THWR------VLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCP-QYPGSEI 57
T WR L LL+ D NE Q V G TVIL C + P +
Sbjct: 7 TAWRGMRPEVTLACLLLATAGCFADLNEVPQVTVQPASTVQKPGGTVILGCVVEPPRMNV 66
Query: 58 LWQHNDKNIGGDED 71
W+ N K + G +D
Sbjct: 67 TWRLNGKELNGSDD 80
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 28.1 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 148 VYYWSKNRKAKAKPVTRGAG--AGGRQRGQNKERPPPVPNPDYEP 190
V W +NR+AK + RGA G + + PPPV N + P
Sbjct: 82 VQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPP 126
>gi|239749362 PREDICTED: hypothetical protein XP_002347023 [Homo
sapiens]
Length = 156
Score = 27.7 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 152 SKNRKAKAKPVTRGAGAGGRQRGQNKERPPPVP 184
S+N +++GAG+ G QRG PP +P
Sbjct: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALP 145
>gi|239749348 PREDICTED: hypothetical protein XP_002347004 [Homo
sapiens]
Length = 156
Score = 27.7 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 152 SKNRKAKAKPVTRGAGAGGRQRGQNKERPPPVP 184
S+N +++GAG+ G QRG PP +P
Sbjct: 113 SRNPDVGPNTLSQGAGSAGPQRGSELGGPPALP 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,672,935
Number of Sequences: 37866
Number of extensions: 487129
Number of successful extensions: 2055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2003
Number of HSP's gapped (non-prelim): 72
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.