Guide to the Human Genome
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Name: CD3E Sequence: fasta or formatted (207aa) NCBI GI: 4502671
Description:

CD3E antigen, epsilon polypeptide precursor

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          7           1
 C cysteine            2.9          6           1
 D aspartate           5.8         12           2
 E glutamate           6.3         13           2
 F phenylalanine       1.0          2           1
 G glycine            11.1         23           2
 H histidine           1.4          3           1
 I isoleucine          5.8         12           1
 K lysine              5.3         11           1
 L leucine             8.2         17           4
 M methionine          2.4          5           1
 N asparagine          4.8         10           1
 P proline             5.8         12           3
 Q glutamine           4.8         10           1
 R arginine            6.3         13           2
 S serine              6.3         13           1
 T threonine           4.3          9           2
 V valine              6.8         14           1
 W tryptophan          1.9          4           1
 Y tyrosine            5.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD3E antigen, epsilon polypeptide precursor 
CD3G                  0.046   CD3G antigen, gamma polypeptide precursor 
PXDNL                 0.036   peroxidasin homolog-like 
UNC5D                 0.019   unc-5 homolog D 
SCN4B                 0.017   sodium channel, voltage-gated, type IV, beta isoform...
SCN4B                 0.017   sodium channel, voltage-gated, type IV, beta isofor...
CD3D                  0.017   CD3 antigen, delta subunit isoform A precursor 
AHNAK                 0.012   AHNAK nucleoprotein isoform 1 
NDST2                 0.012   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
CABIN1                0.010   calcineurin binding protein 1 
TTN                   0.010   titin isoform novex-2 
TTN                   0.010   titin isoform novex-1 
TTN                   0.010   titin isoform N2-B 
KIR2DS1               0.010   killer cell immunoglobulin-like receptor, two domains...
TSPAN6                0.010   transmembrane 4 superfamily member 6 
BRWD3                 0.010   bromodomain and WD repeat domain containing 3 [Homo...
KIR2DS3               0.007   killer cell immunoglobulin-like receptor, two domains...
MAP1A                 0.007   microtubule-associated protein 1A 
SEMA3C                0.007   semaphorin 3C 
PHF14                 0.007   PHD finger protein 14 isoform 2 
PHF14                 0.007   PHD finger protein 14 isoform 1 
TTN                   0.007   titin isoform N2-A 
PRKAR1A               0.007   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.007   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.007   cAMP-dependent protein kinase, regulatory subunit alp...
KIR2DL1               0.007   killer cell immunoglobulin-like receptor, two domai...
BOC                   0.007   brother of CDO 
DRGX                  0.007   dorsal root ganglia homeobox 
LOC100289869          0.007   PREDICTED: hypothetical protein XP_002347023 
LOC100291142          0.007   PREDICTED: hypothetical protein XP_002347004 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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