Guide to the Human Genome
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Name: CCKAR Sequence: fasta or formatted (428aa) NCBI GI: 4502607
Description:

cholecystokinin A receptor

Referenced in:

Stomach, Small Intestine, and Colon
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         25           2
 C cysteine            3.3         14           2
 D aspartate           2.1          9           1
 E glutamate           3.7         16           4
 F phenylalanine       5.6         24           2
 G glycine             4.9         21           2
 H histidine           0.7          3           1
 I isoleucine          6.3         27           2
 K lysine              4.4         19           2
 L leucine            12.4         53           3
 M methionine          3.7         16           2
 N asparagine          5.1         22           3
 P proline             6.1         26           2
 Q glutamine           3.0         13           2
 R arginine            5.4         23           2
 S serine             10.3         44           3
 T threonine           6.5         28           3
 V valine              6.1         26           2
 W tryptophan          1.4          6           1
 Y tyrosine            3.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cholecystokinin A receptor 
CCKBR                 0.432   cholecystokinin B receptor 
NPFFR1                0.164   neuropeptide FF receptor 1 
NPFFR2                0.159   neuropeptide FF receptor 2 isoform 2 
NPFFR2                0.159   neuropeptide FF receptor 2 isoform 1 
NPFFR2                0.159   neuropeptide FF receptor 2 isoform 3 
HCRTR1                0.157   orexin receptor 1 
HCRTR2                0.147   orexin receptor 2 
TACR3                 0.139   tachykinin receptor 3 
TACR2                 0.138   tachykinin receptor 2 
BRS3                  0.137   bombesin-like receptor 3 
QRFPR                 0.134   G protein-coupled receptor 103 
TACR1                 0.131   tachykinin receptor 1 isoform long 
SSTR2                 0.128   somatostatin receptor 2 
NPY1R                 0.127   neuropeptide Y receptor Y1 
SSTR4                 0.122   somatostatin receptor 4 
NPY5R                 0.122   neuropeptide Y receptor Y5 
TRHR                  0.115   thyrotropin-releasing hormone receptor 
ADRB1                 0.114   beta-1-adrenergic receptor 
NMBR                  0.110   neuromedin B receptor 
KISS1R                0.108   G protein-coupled receptor 54 
AVPR1B                0.108   arginine vasopressin receptor 1B 
NMUR1                 0.108   neuromedin U receptor 1 
PRLHR                 0.108   G protein-coupled receptor 10 
OXTR                  0.107   oxytocin receptor 
GALR1                 0.107   galanin receptor 1 
TACR1                 0.107   tachykinin receptor 1 isoform short 
OPRL1                 0.106   opiate receptor-like 1 
OPRL1                 0.106   opiate receptor-like 1 
GALR2                 0.101   galanin receptor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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