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Search of human proteins with 4502349
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 825 0.0
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1... 329 2e-90
gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2... 318 5e-87
gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 ... 318 5e-87
gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4... 303 2e-82
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ... 303 2e-82
gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 ... 244 1e-64
gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens] 240 1e-63
gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo... 119 6e-27
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 35 0.12
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 35 0.12
gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Ho... 33 0.34
gi|115298684 polypeptide N-acetylgalactosaminyltransferase 6 [Ho... 33 0.45
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 32 0.76
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 32 0.76
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 32 0.76
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 32 0.76
gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprot... 32 1.3
gi|116292174 fidgetin-like 2 [Homo sapiens] 32 1.3
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 32 1.3
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 1.3
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 31 1.7
gi|239752435 PREDICTED: similar to melanoma antigen family C, 2 ... 31 1.7
gi|239746952 PREDICTED: similar to melanoma antigen family C, 2 ... 31 1.7
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 1.7
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 1.7
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 1.7
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 825 bits (2132), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSH 60
MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSH
Sbjct: 1 MLRRLLERPCTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSH 60
Query: 61 LPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCE 120
LPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCE
Sbjct: 61 LPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCE 120
Query: 121 PRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVR 180
PRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVR
Sbjct: 121 PRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVR 180
Query: 181 EALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSAL 240
EALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSAL
Sbjct: 181 EALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSAL 240
Query: 241 TPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEEN 300
TPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEEN
Sbjct: 241 TPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEEN 300
Query: 301 PHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPG 360
PHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPG
Sbjct: 301 PHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPG 360
Query: 361 SSQAFRQEMLQRRPPARPGPLSTANHTALRGSH 393
SSQAFRQEMLQRRPPARPGPLSTANHTALRGSH
Sbjct: 361 SSQAFRQEMLQRRPPARPGPLSTANHTALRGSH 393
>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
membrane-bound form [Homo sapiens]
Length = 398
Score = 329 bits (844), Expect = 2e-90
Identities = 166/306 (54%), Positives = 204/306 (66%), Gaps = 6/306 (1%)
Query: 39 GRDQGPTFDYSHPRDVYSNLSHLPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSL 98
G D P D S P S+L P LP CPE SPLLVGP+ + F+ L
Sbjct: 97 GGDSSPVVD-SGPGPA----SNLTSVPVPHTTALSLPACPEESPLLVGPMLIEFNMPVDL 151
Query: 99 AEIVERNPRVEPGGRYRPAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGI 158
+ ++NP V+ GGRY P C + AII+P R R+ HL+ LY+LHP LQRQQL YGI
Sbjct: 152 ELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGI 211
Query: 159 YVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVA 218
YVI+QAG+ FNRAKLLNVG +EAL+D ++ C DVDL+P NDHN Y C + PRH++
Sbjct: 212 YVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQ-PRHIS 270
Query: 219 VAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISR 278
VAM+KFG+SLPY QYFGGVSAL+ Q+L +NGFPN YWGWGGEDDDI R+ GM ISR
Sbjct: 271 VAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISR 330
Query: 279 PPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNI 338
P VG +M++H DK NE NP RFD + T+ + DG+NSLTYQ+L + PLYT I
Sbjct: 331 PNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQI 390
Query: 339 TADIGT 344
T DIGT
Sbjct: 391 TVDIGT 396
>gi|53759113 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 318 bits (815), Expect = 5e-87
Identities = 158/295 (53%), Positives = 196/295 (66%), Gaps = 3/295 (1%)
Query: 56 SNLSHLPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYR 115
S L +P A GP AP LP CP+ P LVG + + F+ L + NP V GGRY
Sbjct: 77 SGLPEVPSALPGPTAPT-LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYT 135
Query: 116 PAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLL 175
P C P A+I+P R REHHLR L++LHP L+RQ+L YG+YVI+Q G TFNRAKLL
Sbjct: 136 PPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLL 195
Query: 176 NVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYF 234
NVG EAL+ D +DC DVDL+P +D NLY C + PRH A+AM+KFG+ LPY YF
Sbjct: 196 NVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAIAMDKFGFRLPYAGYF 254
Query: 235 GGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGD 294
GGVS L+ Q+L++NGFPNEYWGWGGEDDDI R+ L GMKISRP +G Y+M+KH D
Sbjct: 255 GGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD 314
Query: 295 KGNEENPHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGP 349
K NE NP RF + T+ + +DG+ S+ YQ+L PL+TNIT DIG P P
Sbjct: 315 KHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWP 369
>gi|4502347 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2
[Homo sapiens]
Length = 372
Score = 318 bits (815), Expect = 5e-87
Identities = 158/295 (53%), Positives = 196/295 (66%), Gaps = 3/295 (1%)
Query: 56 SNLSHLPGAPGGPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYR 115
S L +P A GP AP LP CP+ P LVG + + F+ L + NP V GGRY
Sbjct: 77 SGLPEVPSALPGPTAPT-LPPCPDSPPGLVGRLLIEFTSPMPLERVQRENPGVLMGGRYT 135
Query: 116 PAGCEPRSRTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLL 175
P C P A+I+P R REHHLR L++LHP L+RQ+L YG+YVI+Q G TFNRAKLL
Sbjct: 136 PPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLL 195
Query: 176 NVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYF 234
NVG EAL+ D +DC DVDL+P +D NLY C + PRH A+AM+KFG+ LPY YF
Sbjct: 196 NVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAIAMDKFGFRLPYAGYF 254
Query: 235 GGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGD 294
GGVS L+ Q+L++NGFPNEYWGWGGEDDDI R+ L GMKISRP +G Y+M+KH D
Sbjct: 255 GGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRD 314
Query: 295 KGNEENPHRFDLLVRTQNSWTQDGMNSLTYQLLARELGPLYTNITADIGTDPRGP 349
K NE NP RF + T+ + +DG+ S+ YQ+L PL+TNIT DIG P P
Sbjct: 315 KHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDIGRPPSWP 369
>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 303 bits (776), Expect = 2e-82
Identities = 152/268 (56%), Positives = 177/268 (66%), Gaps = 2/268 (0%)
Query: 74 LPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAIIVPHRA 133
L CP SP L G + F P +L E+ NP+V G RYRP C+ R AI+VPHR
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
Query: 134 REHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFL 193
RE HL LL HLHPFLQRQQL YGIYVIHQA FNRAKLLNVG EAL++E WDC
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIF 192
Query: 194 HDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPN 253
HDVDL+PEND NLY C+ P+H+ V N GY L Y YFGGV+AL+ +Q+ K+NGF N
Sbjct: 193 HDVDLVPENDFNLYKCEEH-PKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
Query: 254 EYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNS 313
YWGWGGEDDD+ RV L MKISRP VG Y MV H DKGNE N R LL +
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
Query: 314 WTQDGMNSLTYQLLARELGPLYTNITAD 341
W DG++S +Y+L++ E PLY NIT D
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 303 bits (776), Expect = 2e-82
Identities = 152/268 (56%), Positives = 177/268 (66%), Gaps = 2/268 (0%)
Query: 74 LPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTAIIVPHRA 133
L CP SP L G + F P +L E+ NP+V G RYRP C+ R AI+VPHR
Sbjct: 74 LDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRG-RYRPQECKALQRVAILVPHRN 132
Query: 134 REHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFL 193
RE HL LL HLHPFLQRQQL YGIYVIHQA FNRAKLLNVG EAL++E WDC
Sbjct: 133 REKHLMYLLEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIF 192
Query: 194 HDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPN 253
HDVDL+PEND NLY C+ P+H+ V N GY L Y YFGGV+AL+ +Q+ K+NGF N
Sbjct: 193 HDVDLVPENDFNLYKCEEH-PKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSN 251
Query: 254 EYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNS 313
YWGWGGEDDD+ RV L MKISRP VG Y MV H DKGNE N R LL +
Sbjct: 252 NYWGWGGEDDDLRLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNAERMKLLHQVSRV 311
Query: 314 WTQDGMNSLTYQLLARELGPLYTNITAD 341
W DG++S +Y+L++ E PLY NIT D
Sbjct: 312 WRTDGLSSCSYKLVSVEHNPLYINITVD 339
>gi|4757828 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5
[Homo sapiens]
Length = 388
Score = 244 bits (623), Expect = 1e-64
Identities = 118/268 (44%), Positives = 169/268 (63%), Gaps = 5/268 (1%)
Query: 77 CPERSPLLVGPVSVSFSPVPS--LAEIVERNPRVEPGGRYRPAGCEPRSRTAIIVPHRAR 134
CPER P + GP+ ++ S + + E+ ++P ++ GG ++P+ C PR + AI++P R R
Sbjct: 114 CPERLPSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDCMPRWKVAILIPFRNR 173
Query: 135 EHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLH 194
HL +L HL P LQRQ+L + YV+ Q G FNRA L NVG +EA++D +WDCL H
Sbjct: 174 HEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFH 233
Query: 195 DVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFPNE 254
DVD +PE+D N Y C + PRH A ++K+ Y LPY ++FGGVS LT +Q+ K+NGFPN
Sbjct: 234 DVDHIPESDRNYYGCG-QMPRHFATKLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFPNA 292
Query: 255 YWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRTQNSW 314
+WGWGGEDDD+ RV+ AG +SRP G YK + H +G + R+ LL +++
Sbjct: 293 FWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHH-HRGEVQFLGRYALLRKSKERQ 351
Query: 315 TQDGMNSLTYQLLARELGPLYTNITADI 342
DG+N+L Y LY NIT ++
Sbjct: 352 GLDGLNNLNY-FANITYDALYKNITVNL 378
>gi|190570165 beta-1,4-galactosyltransferase 6 [Homo sapiens]
Length = 382
Score = 240 bits (613), Expect = 1e-63
Identities = 121/275 (44%), Positives = 172/275 (62%), Gaps = 13/275 (4%)
Query: 75 PY--CPERSPLLVGPVSVSFSPVP--SLAEIVERNPRVEPGGRYRPAGCEPRSRTAIIVP 130
PY CPE+ P + G ++V+ S V + ++ ++ +EPGG +RP C+PR + A+++P
Sbjct: 104 PYLPCPEKLPYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIP 163
Query: 131 HRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDEEWDC 190
R R HL + HL P LQ+Q+L + YVI Q G FNRA L NVG +EA++D WDC
Sbjct: 164 FRNRHEHLPIFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDC 223
Query: 191 LFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYLKMNG 250
+ HDVD LPEND N Y C PRH A ++K+ Y LPY ++FGGVS LT +Q+ K+NG
Sbjct: 224 VIFHDVDHLPENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKING 282
Query: 251 FPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHRFDLLVRT 310
FPN +WGWGGEDDD+ RV AG ++RP +G YK + H +G + R+ LL +
Sbjct: 283 FPNAFWGWGGEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHH-HRGEVQFLGRYKLLRYS 341
Query: 311 QNSWTQDGMNSLTYQ---LLARELGPLYTNITADI 342
+ DG+N+L Y+ L+ R LYTNI+ ++
Sbjct: 342 KERQYIDGLNNLIYRPKILVDR----LYTNISVNL 372
>gi|6005952 xylosylprotein beta 1,4-galactosyltransferase 7 [Homo
sapiens]
Length = 327
Score = 119 bits (297), Expect = 6e-27
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 8/209 (3%)
Query: 124 RTAIIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREAL 183
R A++VP R R L + + H+ FL R+++ + IYV++Q + FNRA L+NVG E+
Sbjct: 94 RLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLES- 152
Query: 184 RDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPD 243
D + +HDVDLLP N+ Y GP HVA Y Y Y GG+ L+
Sbjct: 153 -SNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYH--YKTYVGGILLLSKQ 209
Query: 244 QYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTSVGHYKMVKHRGDKGNEENPHR 303
Y NG N +WGWG EDD+ R++ AG+++ RP YK +H D + +
Sbjct: 210 HYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQK 269
Query: 304 FDLLVRTQNSWTQD---GMNSLTYQLLAR 329
+ + Q + D G+N++ Y + +R
Sbjct: 270 -RIAAQKQEQFKVDREGGLNTVKYHVASR 297
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 341 DIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLSTANHTALRGSH 393
D T P GP+ P GPR PPG + + P PGP T +G +
Sbjct: 755 DGDTGPTGPQGPQGPRGPPGKNGS-------PGSPGEPGPSGTPGQKGSKGEN 800
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 341 DIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLSTANHTALRGSH 393
D T P GP+ P GPR PPG + + P PGP T +G +
Sbjct: 1308 DGDTGPTGPQGPQGPRGPPGKNGS-------PGSPGEPGPSGTPGQKGSKGEN 1353
>gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Homo
sapiens]
Length = 633
Score = 33.5 bits (75), Expect = 0.34
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 226 YSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTS-VG 284
Y + P + GG+ +++ + + + + E WGGE+ +++ RV G ++ P S VG
Sbjct: 355 YPIKTPTFAGGLFSISKEYFEYIGSYDEEMEIWGGENIEMSFRVWQCGGQLEIMPCSVVG 414
Query: 285 HYKMVK--HRGDKGNE 298
H K H KG +
Sbjct: 415 HVFRSKSPHSFPKGTQ 430
>gi|115298684 polypeptide N-acetylgalactosaminyltransferase 6 [Homo
sapiens]
Length = 622
Score = 33.1 bits (74), Expect = 0.45
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 226 YSLPYPQYFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPTS-VG 284
Y + P + GG+ +++ + + + N+ WGGE+ +++ RV G ++ P S VG
Sbjct: 347 YPIKSPTFAGGLFSISKSYFEHIGTYDNQMEIWGGENVEMSFRVWQCGGQLEIIPCSVVG 406
Query: 285 HYKMVK--HRGDKG 296
H K H KG
Sbjct: 407 HVFRTKSPHTFPKG 420
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 32.3 bits (72), Expect = 0.76
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 30 GFRSLSALFGRDQGPTFDYSHP-RDVYSNLSHLPGAPGGP-----PAPQGLPYC--PERS 81
G L L G DQGP +P R + + PG PG P P G+P PE
Sbjct: 1297 GLPGLPGLKG-DQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1355
Query: 82 PLLVGPVSVSFSPVPSLAEIVERNPRVEPG 111
P L+GP P PS I+ + PG
Sbjct: 1356 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1385
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.3 bits (72), Expect = 0.76
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 30 GFRSLSALFGRDQGPTFDYSHP-RDVYSNLSHLPGAPGGP-----PAPQGLPYC--PERS 81
G L L G DQGP +P R + + PG PG P P G+P PE
Sbjct: 1291 GLPGLPGLKG-DQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1349
Query: 82 PLLVGPVSVSFSPVPSLAEIVERNPRVEPG 111
P L+GP P PS I+ + PG
Sbjct: 1350 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1379
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 32.3 bits (72), Expect = 0.76
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 30 GFRSLSALFGRDQGPTFDYSHP-RDVYSNLSHLPGAPGGP-----PAPQGLPYC--PERS 81
G L L G DQGP +P R + + PG PG P P G+P PE
Sbjct: 1294 GLPGLPGLKG-DQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGE 1352
Query: 82 PLLVGPVSVSFSPVPSLAEIVERNPRVEPG 111
P L+GP P PS I+ + PG
Sbjct: 1353 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPG 1382
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 32.3 bits (72), Expect = 0.76
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 343 GTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGPLSTANHTALRG 391
G +GPR P GP P G S+ PP PGP H + G
Sbjct: 1705 GVGTQGPRGPPGPAGPSGESRPG-----SPGPPGSPGPRGPPGHLGVPG 1748
>gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprotein
[Homo sapiens]
Length = 909
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 27/125 (21%)
Query: 270 RLAGMKISRPPTSVGHYKMVKHRGDKGN------------EENPHRFDLLVRTQNSWTQD 317
+L ++ SRPP G H G G ++NP R S +
Sbjct: 748 KLRCVRPSRPPR--GFQPCQAHLGHLGKGLMRKPPDSYPPKDNPRRLLQCQNVDISRPLN 805
Query: 318 GMNSLTYQLLARELGPLYTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEM--LQRRPP 375
G+N Q R L PL+ R PRAPS P P + A RQ + PP
Sbjct: 806 GLNVPQPQSTQRVLPPLH-----------RAPRAPSVPARPLPAKPALRQAQGTCKPNPP 854
Query: 376 ARPGP 380
+P P
Sbjct: 855 QKPLP 859
>gi|116292174 fidgetin-like 2 [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 48 YSHPRDVYS---NLSHLPGAPGGPPAPQGLPYCPERSPL--LVGPVSVSFSPVPSLAE-- 100
Y++P Y+ LP PG PPAP P P +PL P + F AE
Sbjct: 203 YNYPAGGYAAQPGYGALPPPPGPPPAPYLTPGLPAPTPLPAPAPPTAYGFPTAAPGAESG 262
Query: 101 -IVERNPRVE-PGGRYRPAGCEP 121
++R E P GRYR EP
Sbjct: 263 LSLKRKAADEGPEGRYRKYAYEP 285
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 233 YFGGVSALTPDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISR 278
Y G++ + +++ GF GWG ED D+ +V AG+K R
Sbjct: 691 YGFGITCIYKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFR 736
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 341 DIGTDPRG-PRAPSGPRYPPGSSQAFRQEM 369
D GT P G P AP+GP PPG Q Q++
Sbjct: 457 DSGTQPGGVPSAPTGPLGPPGHGQTLGQQV 486
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 341 DIGTDPRG-PRAPSGPRYPPGSSQAFRQEM 369
D GT P G P AP+GP PPG Q Q++
Sbjct: 457 DSGTQPGGVPSAPTGPLGPPGHGQTLGQQV 486
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 341 DIGTDPRG-PRAPSGPRYPPGSSQAFRQEM 369
D GT P G P AP+GP PPG Q Q++
Sbjct: 457 DSGTQPGGVPSAPTGPLGPPGHGQTLGQQV 486
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 341 DIGTDPRG-PRAPSGPRYPPGSSQAFRQEM 369
D GT P G P AP+GP PPG Q Q++
Sbjct: 463 DSGTQPGGVPSAPTGPLGPPGHGQTLGQQV 492
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 31.2 bits (69), Expect = 1.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 8/30 (26%)
Query: 57 NLSHLPGAPGG--------PPAPQGLPYCP 78
N S++PG PGG PP P G P CP
Sbjct: 160 NTSYMPGMPGGISPYPSGYPPNPSGYPGCP 189
>gi|239752435 PREDICTED: similar to melanoma antigen family C, 2
[Homo sapiens]
Length = 424
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 16 VGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHLPGAPGGPPAPQGLP 75
+ S +++ S S S + G GP + H + S L P +P PQG
Sbjct: 118 ISSSTFYLVFSSSSSSSSSSLILG---GPEEEEVHSAGMSSLLQSTPKSP-----PQGPS 169
Query: 76 YCPERSPLLVGPVSVSFSPV 95
CP ++PL SVS SP+
Sbjct: 170 QCPPQNPLSSCSSSVSCSPM 189
>gi|239746952 PREDICTED: similar to melanoma antigen family C, 2
[Homo sapiens]
Length = 424
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 16 VGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHLPGAPGGPPAPQGLP 75
+ S +++ S S S + G GP + H + S L P +P PQG
Sbjct: 118 ISSSTFYLVFSSSSSSSSSSLILG---GPEEEEVHSAGMSSLLQSTPKSP-----PQGPS 169
Query: 76 YCPERSPLLVGPVSVSFSPV 95
CP ++PL SVS SP+
Sbjct: 170 QCPPQNPLSSCSSSVSCSPM 189
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 335 YTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
Y I G RG P GP+ PPG RQ PP PGP
Sbjct: 1364 YPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPGPPGP 1404
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 347 RGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
+GP P GP PP RQ + PP PGP
Sbjct: 1396 QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429
Score = 29.3 bits (64), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 341 DIGTDPRGPRAPSGPRYPPGSSQAFRQEML 370
D G RGP P GP PPG S FR + L
Sbjct: 854 DPGVGERGPPGPQGPPGPPGPS--FRHDKL 881
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 335 YTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
Y I G RG P GP+ PPG RQ PP PGP
Sbjct: 949 YPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPGPPGP 989
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 347 RGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
+GP P GP PP RQ + PP PGP
Sbjct: 981 QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
Score = 29.3 bits (64), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 341 DIGTDPRGPRAPSGPRYPPGSSQAFRQEML 370
D G RGP P GP PPG S FR + L
Sbjct: 439 DPGVGERGPPGPQGPPGPPGPS--FRHDKL 466
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 335 YTNITADIGTDPRGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
Y I G RG P GP+ PPG RQ PP PGP
Sbjct: 1129 YPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQ-----GPPGPPGP 1169
Score = 30.4 bits (67), Expect = 2.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 347 RGPRAPSGPRYPPGSSQAFRQEMLQRRPPARPGP 380
+GP P GP PP RQ + PP PGP
Sbjct: 1161 QGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
Score = 29.3 bits (64), Expect = 6.4
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 341 DIGTDPRGPRAPSGPRYPPGSSQAFRQEML 370
D G RGP P GP PPG S FR + L
Sbjct: 619 DPGVGERGPPGPQGPPGPPGPS--FRHDKL 646
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,369,747
Number of Sequences: 37866
Number of extensions: 1122710
Number of successful extensions: 6185
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 5495
Number of HSP's gapped (non-prelim): 769
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.