Guide to the Human Genome
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Name: GALNT6 Sequence: fasta or formatted (622aa) NCBI GI: 115298684
Description:

polypeptide N-acetylgalactosaminyltransferase 6

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         36           2
 C cysteine            2.6         16           1
 D aspartate           4.3         27           2
 E glutamate           6.9         43           2
 F phenylalanine       5.0         31           1
 G glycine             5.8         36           2
 H histidine           3.5         22           1
 I isoleucine          4.0         25           2
 K lysine              5.9         37           2
 L leucine            10.5         65           2
 M methionine          2.1         13           1
 N asparagine          3.7         23           2
 P proline             5.9         37           2
 Q glutamine           5.3         33           2
 R arginine            6.3         39           3
 S serine              6.3         39           2
 T threonine           5.5         34           2
 V valine              6.1         38           3
 W tryptophan          2.1         13           1
 Y tyrosine            2.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polypeptide N-acetylgalactosaminyltransferase 6 [Ho... 
GALNT3                0.656   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
GALNT4                0.362   polypeptide N-acetylgalactosaminyltransferase 4 [Hom...
GALNT12               0.335   N-acetylgalactosaminyltransferase 12 
GALNT13               0.324   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT1                0.319   polypeptide N-acetylgalactosaminyltransferase 1 [Hom...
GALNT2                0.278   polypeptide N-acetylgalactosaminyltransferase 2 [Homo...
GALNTL2               0.264   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT5                0.258   N-acetylgalactosaminyltransferase 5 
GALNT11               0.258   N-acetylgalactosaminyltransferase 11 
GALNT14               0.256   N-acetylgalactosaminyltransferase 14 
GALNTL1               0.256   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT10               0.253   GalNAc transferase 10 isoform a 
GALNTL6               0.241   N-acetylgalactosaminyltransferase-like 6 
GALNT7                0.231   polypeptide N-acetylgalactosaminyltransferase 7 [Ho...
GALNT9                0.218   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
WBSCR17               0.211   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
GALNTL4               0.201   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNTL5               0.199   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT8                0.195   polypeptide N-acetylgalactosaminyltransferase 8 [Homo...
GALNT10               0.080   GalNAc transferase 10 isoform b 
GALNT9                0.062   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
B4GALT4               0.008   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4...
B4GALT4               0.008   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ...
B4GALNT4              0.008   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
B4GALT3               0.006   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ...
TEAD4                 0.006   TEA domain family member 4 isoform 3 
TEAD4                 0.006   TEA domain family member 4 isoform 2 
TEAD4                 0.006   TEA domain family member 4 isoform 1 
MDN1                  0.006   MDN1, midasin homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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