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Search of human proteins with 4502303
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502303 mitochondrial ATP synthase, O subunit precursor
[Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502303 mitochondrial ATP synthase, O subunit precursor [Homo... 403 e-113
gi|33946313 ninein isoform 4 [Homo sapiens] 31 0.68
gi|33946321 ninein isoform 5 [Homo sapiens] 31 0.68
gi|148536871 ninein isoform 1 [Homo sapiens] 31 0.68
gi|148536869 ninein isoform 2 [Homo sapiens] 31 0.68
gi|118582289 transcription factor AP-2 beta [Homo sapiens] 30 1.5
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 30 2.0
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 30 2.0
gi|7706113 protocadherin 12 precursor [Homo sapiens] 30 2.0
gi|109637774 ubiquitin carboxyl-terminal hydrolase CYLD isoform ... 29 3.4
gi|14165258 ubiquitin carboxyl-terminal hydrolase CYLD isoform 1... 29 3.4
gi|109637776 ubiquitin carboxyl-terminal hydrolase CYLD isoform ... 29 3.4
gi|111118978 ephrin receptor EphB2 isoform 1 precursor [Homo sap... 29 3.4
gi|21396504 ephrin receptor EphB2 isoform 2 precursor [Homo sapi... 29 3.4
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap... 29 3.4
gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo sa... 29 3.4
gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens] 28 4.4
gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens] 28 4.4
gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens] 28 4.4
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 28 4.4
gi|51242957 protein kinase LYK5 isoform 4 [Homo sapiens] 28 5.8
gi|51242955 protein kinase LYK5 isoform 1 [Homo sapiens] 28 5.8
gi|51242960 protein kinase LYK5 isoform 2 [Homo sapiens] 28 5.8
gi|31982873 protein kinase LYK5 isoform 3 [Homo sapiens] 28 5.8
gi|227498241 actin-like 8 [Homo sapiens] 28 7.6
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 28 7.6
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 28 7.6
gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens] 28 7.6
gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens] 28 7.6
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 27 9.9
>gi|4502303 mitochondrial ATP synthase, O subunit precursor [Homo
sapiens]
Length = 213
Score = 403 bits (1036), Expect = e-113
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60
MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK
Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60
Query: 61 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN 120
ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN
Sbjct: 61 ELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSN 120
Query: 121 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS 180
TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS
Sbjct: 121 TQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPS 180
Query: 181 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV
Sbjct: 181 ILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 31.2 bits (69), Expect = 0.68
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKS------LNDITAKERFSPL 104
++ L+Q K+ L + Q +++ K + + + S+K S L + + L
Sbjct: 447 REQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENL 506
Query: 105 TT----NLINLLAEN-GRLSNTQGVVSAFSTMMSVHRGEVP--CTVTSASPLEEATLSEL 157
T NL N+LAE G L + ++ R E C V + + EL
Sbjct: 507 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVL------QDQVDEL 560
Query: 158 KTVLKSFLSQGQVLKLEAKTDPS 180
++ L+ + +QG+VL+L K PS
Sbjct: 561 QSELEEYRAQGRVLRLPLKNSPS 583
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 31.2 bits (69), Expect = 0.68
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKS------LNDITAKERFSPL 104
++ L+Q K+ L + Q +++ K + + + S+K S L + + L
Sbjct: 441 REQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENL 500
Query: 105 TT----NLINLLAEN-GRLSNTQGVVSAFSTMMSVHRGEVP--CTVTSASPLEEATLSEL 157
T NL N+LAE G L + ++ R E C V + + EL
Sbjct: 501 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVL------QDQVDEL 554
Query: 158 KTVLKSFLSQGQVLKLEAKTDPS 180
++ L+ + +QG+VL+L K PS
Sbjct: 555 QSELEEYRAQGRVLRLPLKNSPS 577
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 31.2 bits (69), Expect = 0.68
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKS------LNDITAKERFSPL 104
++ L+Q K+ L + Q +++ K + + + S+K S L + + L
Sbjct: 441 REQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENL 500
Query: 105 TT----NLINLLAEN-GRLSNTQGVVSAFSTMMSVHRGEVP--CTVTSASPLEEATLSEL 157
T NL N+LAE G L + ++ R E C V + + EL
Sbjct: 501 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVL------QDQVDEL 554
Query: 158 KTVLKSFLSQGQVLKLEAKTDPS 180
++ L+ + +QG+VL+L K PS
Sbjct: 555 QSELEEYRAQGRVLRLPLKNSPS 577
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 31.2 bits (69), Expect = 0.68
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKS------LNDITAKERFSPL 104
++ L+Q K+ L + Q +++ K + + + S+K S L + + L
Sbjct: 441 REQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENL 500
Query: 105 TT----NLINLLAEN-GRLSNTQGVVSAFSTMMSVHRGEVP--CTVTSASPLEEATLSEL 157
T NL N+LAE G L + ++ R E C V + + EL
Sbjct: 501 TNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVL------QDQVDEL 554
Query: 158 KTVLKSFLSQGQVLKLEAKTDPS 180
++ L+ + +QG+VL+L K PS
Sbjct: 555 QSELEEYRAQGRVLRLPLKNSPS 577
>gi|118582289 transcription factor AP-2 beta [Homo sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 1.5
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 132 MSVHRGEVPCTVTSASPLEEATLSELKTV--LKSFLSQGQVLKLEAKTDPSILGGMIVRI 189
MSV+ GEV C+V L +T TV ++ LS + L + S+LGG++ R
Sbjct: 222 MSVNTGEVFCSVPGRLSLLSSTSKYKVTVGEVQRRLSPPECL------NASLLGGVLRRA 275
Query: 190 GEKYVDMSVKTKIQKLG 206
K S++ +++K+G
Sbjct: 276 KSKNGGRSLRERLEKIG 292
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 47 SAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTT 106
S A+++ +EQ+ +E ++ +L+EP + + P + +K + LN ++
Sbjct: 181 SLAAQERLVEQLSREKQQLLHLLEEP--TSMEVQPMTEELLKQQKLNSHETTITQQSVSD 238
Query: 107 NLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKS 163
+ + L E ++ T+ ++ E+ C S S ++ T+ LK LKS
Sbjct: 239 SHLAELQE--KIQQTEATNKILQEKLNEMSYELKCAQES-SQKQDGTIQNLKETLKS 292
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 47 SAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTT 106
S A+++ +EQ+ +E ++ +L+EP + + P + +K + LN ++
Sbjct: 181 SLAAQERLVEQLSREKQQLLHLLEEP--TSMEVQPMTEELLKQQKLNSHETTITQQSVSD 238
Query: 107 NLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKS 163
+ + L E ++ T+ ++ E+ C S S ++ T+ LK LKS
Sbjct: 239 SHLAELQE--KIQQTEATNKILQEKLNEMSYELKCAQES-SQKQDGTIQNLKETLKS 292
>gi|7706113 protocadherin 12 precursor [Homo sapiens]
Length = 1184
Score = 29.6 bits (65), Expect = 2.0
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 60 KELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFS-PLTTNLINLLAENGRL 118
+E L V Q+L+E +S+L+P ++ S D R S PLTTN + +
Sbjct: 1022 EEDLSVKQLLEEE--LSSLLDPSTGLALDRLSAPDPAWMARLSLPLTTNY-----RDNVI 1074
Query: 119 SNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTD 178
S T + + E P + + L +SE+ ++L+ L Q + +EA ++
Sbjct: 1075 SPDAAATEEPRTFQTFGKAEAPELSPTGTRLASTFVSEMSSLLEMLLEQRSSMPVEAASE 1134
>gi|109637774 ubiquitin carboxyl-terminal hydrolase CYLD isoform 2
[Homo sapiens]
Length = 953
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 47 SAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRS---IKVKSLNDITAKERFSP 103
+ +S ++ + K + ++ ++P + + ++ RS ++ +N +T + RF
Sbjct: 356 NGSSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHS 415
Query: 104 LTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASP------LEEATLSEL 157
L +L + NG + ++ +SA S M ++ V + A P LE +L+E+
Sbjct: 416 LPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEV 475
Query: 158 K 158
K
Sbjct: 476 K 476
>gi|14165258 ubiquitin carboxyl-terminal hydrolase CYLD isoform 1
[Homo sapiens]
Length = 956
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 47 SAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRS---IKVKSLNDITAKERFSP 103
+ +S ++ + K + ++ ++P + + ++ RS ++ +N +T + RF
Sbjct: 359 NGSSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHS 418
Query: 104 LTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASP------LEEATLSEL 157
L +L + NG + ++ +SA S M ++ V + A P LE +L+E+
Sbjct: 419 LPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEV 478
Query: 158 K 158
K
Sbjct: 479 K 479
>gi|109637776 ubiquitin carboxyl-terminal hydrolase CYLD isoform 2
[Homo sapiens]
Length = 953
Score = 28.9 bits (63), Expect = 3.4
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 47 SAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRS---IKVKSLNDITAKERFSP 103
+ +S ++ + K + ++ ++P + + ++ RS ++ +N +T + RF
Sbjct: 356 NGSSVDSQPQSKSKNTWYIDEVAEDPAKSLTEISTDFDRSSPPLQPPPVNSLTTENRFHS 415
Query: 104 LTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASP------LEEATLSEL 157
L +L + NG + ++ +SA S M ++ V + A P LE +L+E+
Sbjct: 416 LPFSLTKMPNTNGSIGHSPLSLSAQSVMEELNTAPVQESPPLAMPPGNSHGLEVGSLAEV 475
Query: 158 K 158
K
Sbjct: 476 K 476
>gi|111118978 ephrin receptor EphB2 isoform 1 precursor [Homo
sapiens]
Length = 986
Score = 28.9 bits (63), Expect = 3.4
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 69 LKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAF 128
L EP++ S L + + + +++++N +T + FSP ++ ++ Q SA
Sbjct: 388 LTEPRIYISDLLAHTQYTFEIQAVNGVTDQSPFSPQFASV--------NITTNQAAPSAV 439
Query: 129 STMMSVHRGEVPCTVTSASP 148
S M V R T++ + P
Sbjct: 440 SIMHQVSRTVDSITLSWSQP 459
>gi|21396504 ephrin receptor EphB2 isoform 2 precursor [Homo
sapiens]
Length = 987
Score = 28.9 bits (63), Expect = 3.4
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 69 LKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAF 128
L EP++ S L + + + +++++N +T + FSP ++ ++ Q SA
Sbjct: 388 LTEPRIYISDLLAHTQYTFEIQAVNGVTDQSPFSPQFASV--------NITTNQAAPSAV 439
Query: 129 STMMSVHRGEVPCTVTSASP 148
S M V R T++ + P
Sbjct: 440 SIMHQVSRTVDSITLSWSQP 459
>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
sapiens]
Length = 1023
Score = 28.9 bits (63), Expect = 3.4
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLIN 110
K N+ + + R+AQ+ + P + L P KR++ V S + ++K+R S
Sbjct: 298 KPNRTPSITPQEERIAQLSESPVI----LTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFE 353
Query: 111 LLAENGRLSNTQGVVSAFSTMMSVH 135
LL N + ++ ST +SVH
Sbjct: 354 LLPSN--------LFNSSSTPVSVH 370
>gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo
sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 3.4
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 51 KQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLIN 110
K N+ + + R+AQ+ + P + L P KR++ V S + ++K+R S
Sbjct: 298 KPNRTPSITPQEERIAQLSESPVI----LTPNAKRTLPVDSSHGFSSKKRKSIKHNFNFE 353
Query: 111 LLAENGRLSNTQGVVSAFSTMMSVH 135
LL N + ++ ST +SVH
Sbjct: 354 LLPSN--------LFNSSSTPVSVH 370
>gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens]
Length = 1368
Score = 28.5 bits (62), Expect = 4.4
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 82 YVKRSIKVKSLNDITAKERFSPL-TTNLINLLAENGRL--SNTQGVVSAFSTMMSVHRGE 138
Y+K + +VK + I ++F L T+N IN L + G F + H GE
Sbjct: 696 YLKDATEVKVI--IEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFP-IRPTHLGE 752
Query: 139 VPCTVTSASPLEEATLSELKTV----LKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYV 194
+P TVT+ SP ++++ V ++ SQ +L L S L + V
Sbjct: 753 IPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTV 812
Query: 195 DMSVKTKIQKLG 206
S + +I +G
Sbjct: 813 TGSERVQITAIG 824
>gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens]
Length = 1428
Score = 28.5 bits (62), Expect = 4.4
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 82 YVKRSIKVKSLNDITAKERFSPL-TTNLINLLAENGRL--SNTQGVVSAFSTMMSVHRGE 138
Y+K + +VK + I ++F L T+N IN L + G F + H GE
Sbjct: 773 YLKDATEVKVI--IEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFP-IRPTHLGE 829
Query: 139 VPCTVTSASPLEEATLSELKTV----LKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYV 194
+P TVT+ SP ++++ V ++ SQ +L L S L + V
Sbjct: 830 IPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTV 889
Query: 195 DMSVKTKIQKLG 206
S + +I +G
Sbjct: 890 TGSERVQITAIG 901
>gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens]
Length = 1445
Score = 28.5 bits (62), Expect = 4.4
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 82 YVKRSIKVKSLNDITAKERFSPL-TTNLINLLAENGRL--SNTQGVVSAFSTMMSVHRGE 138
Y+K + +VK + I ++F L T+N IN L + G F + H GE
Sbjct: 773 YLKDATEVKVI--IEKSDKFDILMTSNEINATGHQQTLLVPSEDGATVLFP-IRPTHLGE 829
Query: 139 VPCTVTSASPLEEATLSELKTV----LKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYV 194
+P TVT+ SP ++++ V ++ SQ +L L S L + V
Sbjct: 830 IPITVTALSPTASDAVTQMILVKAEGIEKSYSQSILLDLTDNRLQSTLKTLSFSFPPNTV 889
Query: 195 DMSVKTKIQKLG 206
S + +I +G
Sbjct: 890 TGSERVQITAIG 901
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 28.5 bits (62), Expect = 4.4
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 94 DITAKERFSPLTTNLINLLAENGR--LSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEE 151
++ KER ++L + GR L Q ++ + + + + ++ T L+
Sbjct: 1292 EVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQ- 1350
Query: 152 ATLSELKTVLKSFLSQGQVLKLEAK 176
A +SELK +K+ L Q Q LKL+ +
Sbjct: 1351 AKVSELKNNMKTLLQQNQQLKLDLR 1375
>gi|51242957 protein kinase LYK5 isoform 4 [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 72 PKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTM 131
PK + VL P++ + ++L AK + L NG + + A +
Sbjct: 176 PKYSVKVL-PWLSPEVLQQNLQGYDAKSDIYSVGITACELA--NGHVPFKD--MPATQML 230
Query: 132 MSVHRGEVPCTV-TSASPLEEATLSELKTVLKSFLS 166
+ G VPC + TS P EE T+S ++V S LS
Sbjct: 231 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLS 266
>gi|51242955 protein kinase LYK5 isoform 1 [Homo sapiens]
Length = 431
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 72 PKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTM 131
PK + VL P++ + ++L AK + L NG + + A +
Sbjct: 234 PKYSVKVL-PWLSPEVLQQNLQGYDAKSDIYSVGITACELA--NGHVPFKD--MPATQML 288
Query: 132 MSVHRGEVPCTV-TSASPLEEATLSELKTVLKSFLS 166
+ G VPC + TS P EE T+S ++V S LS
Sbjct: 289 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLS 324
>gi|51242960 protein kinase LYK5 isoform 2 [Homo sapiens]
Length = 394
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 72 PKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTM 131
PK + VL P++ + ++L AK + L NG + + A +
Sbjct: 197 PKYSVKVL-PWLSPEVLQQNLQGYDAKSDIYSVGITACELA--NGHVPFKD--MPATQML 251
Query: 132 MSVHRGEVPCTV-TSASPLEEATLSELKTVLKSFLS 166
+ G VPC + TS P EE T+S ++V S LS
Sbjct: 252 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLS 287
>gi|31982873 protein kinase LYK5 isoform 3 [Homo sapiens]
Length = 348
Score = 28.1 bits (61), Expect = 5.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 72 PKVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTM 131
PK + VL P++ + ++L AK + L NG + + A +
Sbjct: 197 PKYSVKVL-PWLSPEVLQQNLQGYDAKSDIYSVGITACELA--NGHVPFKD--MPATQML 251
Query: 132 MSVHRGEVPCTV-TSASPLEEATLSELKTVLKSFLS 166
+ G VPC + TS P EE T+S ++V S LS
Sbjct: 252 LEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLS 287
>gi|227498241 actin-like 8 [Homo sapiens]
Length = 366
Score = 27.7 bits (60), Expect = 7.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 114 ENGRLSNTQGVVSAFSTMMSVHR--GEVPCTVTSASPLEE 151
E GR+ N +GV +S ++ HR EVP + + +PL E
Sbjct: 68 ERGRILNWEGVQYLWSFVLENHRREQEVPPVIITETPLRE 107
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 27.7 bits (60), Expect = 7.6
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 116 GRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEA 175
G+ NT+ V+ + + S H+G+ ++T E L + +L++F + V
Sbjct: 183 GKTENTKKVIQYLAVVASSHKGKKDTSITGEL---EKQLLQANPILEAFGNAKTV----- 234
Query: 176 KTDPSILGGMIVRIG----EKYVDMSVKTKIQKLGRAMRE 211
K D S G +RI V +++T + + RA+R+
Sbjct: 235 KNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQ 274
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 27.7 bits (60), Expect = 7.6
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 116 GRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEA 175
G+ NT+ V+ + + S H+G+ ++T E L + +L++F + V
Sbjct: 183 GKTENTKKVIQYLAVVASSHKGKKDTSITGEL---EKQLLQANPILEAFGNAKTV----- 234
Query: 176 KTDPSILGGMIVRIG----EKYVDMSVKTKIQKLGRAMRE 211
K D S G +RI V +++T + + RA+R+
Sbjct: 235 KNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQ 274
>gi|208431757 KLRAQ motif containing 1 isoform 3 [Homo sapiens]
Length = 734
Score = 27.7 bits (60), Expect = 7.6
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 45 LYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPL 104
L S S++ +QV++ L +++++ +E + +L + + IK++ N A + +
Sbjct: 506 LSSTESREGLAQQVQQSLEKISKLEQEKE--HWMLEAQLAK-IKLEKENQRIADKLKNTG 562
Query: 105 TTNLINLLAENGRLSNTQG--VVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLK 162
+ L+ L EN +SNT G +A + + + + T+T S E + + ++K
Sbjct: 563 SAQLVGLAQENAAVSNTAGQDEATAKAVLEPIQSTSLIGTLTRTSDSEVPDVESREDLIK 622
Query: 163 S 163
+
Sbjct: 623 N 623
>gi|208431754 KLRAQ motif containing 1 isoform 1 [Homo sapiens]
Length = 780
Score = 27.7 bits (60), Expect = 7.6
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 45 LYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSPL 104
L S S++ +QV++ L +++++ +E + +L + + IK++ N A + +
Sbjct: 552 LSSTESREGLAQQVQQSLEKISKLEQEKE--HWMLEAQLAK-IKLEKENQRIADKLKNTG 608
Query: 105 TTNLINLLAENGRLSNTQG--VVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLK 162
+ L+ L EN +SNT G +A + + + + T+T S E + + ++K
Sbjct: 609 SAQLVGLAQENAAVSNTAGQDEATAKAVLEPIQSTSLIGTLTRTSDSEVPDVESREDLIK 668
Query: 163 S 163
+
Sbjct: 669 N 669
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 27.3 bits (59), Expect = 9.9
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 119 SNTQGVVSAFSTMMSVHR--GEVPCTVTSASPLEEATLS 155
S+T V + +T +S HR G +PC + SASP + S
Sbjct: 988 SSTPSVPAGTATDVSKHRLQGFIPCRIPSASPQTQRKFS 1026
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,357,108
Number of Sequences: 37866
Number of extensions: 224176
Number of successful extensions: 921
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 44
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.