Guide to the Human Genome
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Name: CD109 Sequence: fasta or formatted (1368aa) NCBI GI: 227430303
Description:

CD109 antigen isoform 3 precursor

Referenced in:

Protease Inhibitors

Other entries for this name:
alt prot [1445aa] CD109 antigen isoform 1 precursor
alt prot [1428aa] CD109 antigen isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         71           2
 C cysteine            1.2         16           1
 D aspartate           4.5         62           2
 E glutamate           6.1         84           2
 F phenylalanine       4.9         67           2
 G glycine             5.8         79           2
 H histidine           1.8         24           3
 I isoleucine          5.8         79           2
 K lysine              5.3         73           3
 L leucine             9.9        136           3
 M methionine          2.0         27           1
 N asparagine          5.4         74           2
 P proline             4.3         59           2
 Q glutamine           4.5         62           2
 R arginine            3.2         44           4
 S serine              9.8        134           2
 T threonine           7.1         97           3
 V valine              8.2        112           2
 W tryptophan          1.3         18           1
 Y tyrosine            3.7         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD109 antigen isoform 3 precursor 
CD109                 0.934   CD109 antigen isoform 1 precursor 
CD109                 0.918   CD109 antigen isoform 2 precursor 
A2ML1                 0.167   alpha-2-macroglobulin-like 1 
A2M                   0.162   alpha-2-macroglobulin precursor 
PZP                   0.156   pregnancy-zone protein 
OVOS2                 0.126   PREDICTED: ovostatin 2 
OVOS                  0.124   PREDICTED: ovostatin 
CPAMD8                0.113   C3 and PZP-like, alpha-2-macroglobulin domain conta...
C4B                   0.079   complement component 4B preproprotein 
C4A                   0.079   complement component 4A preproprotein 
LOC100294156          0.079   PREDICTED: similar to C4A protein isoform 1 
LOC100294156          0.078   PREDICTED: similar to C4A protein isoform 2 
C3                    0.074   complement component 3 precursor 
C5                    0.059   complement component 5 preproprotein 
LOC100133511          0.057   PREDICTED: similar to complement component C3, part...
LOC100133592          0.056   PREDICTED: similar to ovostatin-2 
LOC100293534          0.034   PREDICTED: similar to complement component 4B (Chil...
LOC728735             0.023   PREDICTED: similar to Ovostatin homolog 2 
OVOS                  0.012   PREDICTED: ovostatin 
LOC653879             0.011   PREDICTED: similar to complement component 3 
LOC100292046          0.009   PREDICTED: similar to Complement component 4A (Rodg...
LOC100134413          0.008   PREDICTED: similar to Ovostatin homolog 2 
LOC732434             0.008   PREDICTED: similar to Ovostatin homolog 2 
RPAP3                 0.004   RNA polymerase II associated protein 3 isoform 3 [H...
RPAP3                 0.004   RNA polymerase II associated protein 3 isoform 1 [H...
SV2C                  0.003   synaptic vesicle glycoprotein 2C 
LOC728715             0.003   PREDICTED: similar to hCG38149 
LOC728715             0.003   PREDICTED: hypothetical protein LOC728715 
LOC732435             0.002   PREDICTED: similar to Ovostatin homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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