Guide to the Human Genome
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Name: STRADA Sequence: fasta or formatted (373aa) NCBI GI: 51242957
Description:

protein kinase LYK5 isoform 4

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [348aa] protein kinase LYK5 isoform 3
alt prot [431aa] protein kinase LYK5 isoform 1
alt prot [394aa] protein kinase LYK5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         20           1
 C cysteine            1.6          6           1
 D aspartate           4.6         17           2
 E glutamate           5.9         22           2
 F phenylalanine       4.6         17           2
 G glycine             5.9         22           2
 H histidine           4.6         17           2
 I isoleucine          4.6         17           1
 K lysine              3.8         14           1
 L leucine            11.0         41           2
 M methionine          2.9         11           1
 N asparagine          4.6         17           1
 P proline             5.9         22           1
 Q glutamine           3.5         13           2
 R arginine            4.3         16           2
 S serine              9.7         36           2
 T threonine           5.9         22           2
 V valine              7.2         27           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase LYK5 isoform 4 
STRADA                1.000   protein kinase LYK5 isoform 1 
STRADA                1.000   protein kinase LYK5 isoform 2 
STRADA                0.827   protein kinase LYK5 isoform 3 
STRADB                0.409   STE20-related kinase adaptor beta 
STK39                 0.177   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
OXSR1                 0.176   oxidative-stress responsive 1 
STK4                  0.123   serine/threonine kinase 4 
STK24                 0.120   serine/threonine kinase 24 isoform b 
STK24                 0.120   serine/threonine kinase 24 isoform a 
MST4                  0.119   serine/threonine protein kinase MST4 isoform 1 [Homo...
MAP4K3                0.119   mitogen-activated protein kinase kinase kinase kinas...
STK25                 0.116   serine/threonine kinase 25 
STK3                  0.114   serine/threonine kinase 3 
PAK6                  0.113   p21-activated kinase 6 
PAK6                  0.113   p21-activated kinase 6 
PAK6                  0.113   p21-activated kinase 6 
MAP4K5                0.106   mitogen-activated protein kinase kinase kinase kinas...
MAP4K5                0.106   mitogen-activated protein kinase kinase kinase kinas...
MYO3B                 0.106   myosin IIIB isoform 1 
MYO3B                 0.106   myosin IIIB isoform 2 
MAP4K2                0.106   mitogen-activated protein kinase kinase kinase kinas...
PAK3                  0.105   p21-activated kinase 3 isoform d 
PAK3                  0.105   p21-activated kinase 3 isoform c 
PAK3                  0.105   p21-activated kinase 3 isoform b 
PAK3                  0.105   p21-activated kinase 3 isoform a 
PAK3                  0.105   p21-activated kinase 3 isoform a 
PAK3                  0.105   p21-activated kinase 3 isoform a 
MAP4K1                0.104   mitogen-activated protein kinase kinase kinase kina...
MAP4K1                0.104   mitogen-activated protein kinase kinase kinase kinase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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