Guide to the Human Genome
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Name: TFAP2B Sequence: fasta or formatted (460aa) NCBI GI: 118582289
Description:

transcription factor AP-2 beta

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         26           2
 C cysteine            1.3          6           1
 D aspartate           5.0         23           1
 E glutamate           5.0         23           2
 F phenylalanine       2.2         10           1
 G glycine             8.0         37           2
 H histidine           4.6         21           2
 I isoleucine          2.2         10           1
 K lysine              4.8         22           2
 L leucine            11.7         54           2
 M methionine          2.4         11           2
 N asparagine          4.1         19           2
 P proline             8.7         40           3
 Q glutamine           5.0         23           2
 R arginine            5.9         27           2
 S serine             10.2         47           2
 T threonine           4.6         21           3
 V valine              5.4         25           1
 W tryptophan          0.4          2           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor AP-2 beta 
TFAP2A                0.642   transcription factor AP-2 alpha isoform a 
TFAP2A                0.620   transcription factor AP-2 alpha isoform c 
TFAP2A                0.619   transcription factor AP-2 alpha isoform b 
TFAP2E                0.521   transcription factor AP-2 epsilon (activating enhan...
TFAP2C                0.503   transcription factor AP-2 gamma 
TFAP2D                0.361   transcription factor AP-2 beta-like 1 
ARID1A                0.024   AT rich interactive domain 1A isoform a 
ARID1A                0.024   AT rich interactive domain 1A isoform b 
RBM33                 0.014   RNA binding motif protein 33 
ZNF462                0.012   zinc finger protein 462 
MED12                 0.012   mediator complex subunit 12 
RERE                  0.011   atrophin-1 like protein isoform b 
RERE                  0.011   atrophin-1 like protein isoform a 
RERE                  0.011   atrophin-1 like protein isoform a 
BAI1                  0.011   brain-specific angiogenesis inhibitor 1 precursor [...
IQSEC1                0.011   IQ motif and Sec7 domain 1 isoform a 
GRINA                 0.011   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.011   glutamate receptor, ionotropic, N-methyl D-aspartate...
ATXN2                 0.010   ataxin 2 
ANXA11                0.010   annexin A11 
ANXA11                0.010   annexin A11 
ANXA11                0.010   annexin A11 
RELL2                 0.010   RELT-like 2 
RELL2                 0.010   RELT-like 2 
PTPN21                0.010   protein tyrosine phosphatase, non-receptor type 21 ...
WNK4                  0.010   WNK lysine deficient protein kinase 4 
SCAF1                 0.010   SR-related CTD-associated factor 1 
PRSS12                0.010   neurotrypsin precursor 
DMRTB1                0.010   DMRT-like family B with proline-rich C-terminal, 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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