Guide to the Human Genome
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Name: STRADA Sequence: fasta or formatted (431aa) NCBI GI: 51242955
Description:

protein kinase LYK5 isoform 1

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [348aa] protein kinase LYK5 isoform 3
alt prot [373aa] protein kinase LYK5 isoform 4
alt prot [394aa] protein kinase LYK5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         22           1
 C cysteine            1.4          6           1
 D aspartate           4.6         20           2
 E glutamate           6.7         29           2
 F phenylalanine       4.9         21           2
 G glycine             5.8         25           2
 H histidine           3.9         17           2
 I isoleucine          4.6         20           1
 K lysine              4.2         18           1
 L leucine            10.4         45           2
 M methionine          2.8         12           1
 N asparagine          4.2         18           1
 P proline             5.8         25           2
 Q glutamine           3.5         15           2
 R arginine            5.1         22           2
 S serine             10.2         44           2
 T threonine           5.6         24           2
 V valine              7.2         31           2
 W tryptophan          0.9          4           1
 Y tyrosine            3.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase LYK5 isoform 1 
STRADA                0.903   protein kinase LYK5 isoform 2 
STRADA                0.867   protein kinase LYK5 isoform 4 
STRADA                0.752   protein kinase LYK5 isoform 3 
STRADB                0.354   STE20-related kinase adaptor beta 
STK39                 0.153   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
OXSR1                 0.152   oxidative-stress responsive 1 
STK4                  0.106   serine/threonine kinase 4 
STK24                 0.104   serine/threonine kinase 24 isoform b 
STK24                 0.104   serine/threonine kinase 24 isoform a 
MST4                  0.103   serine/threonine protein kinase MST4 isoform 1 [Homo...
MAP4K3                0.103   mitogen-activated protein kinase kinase kinase kinas...
STK3                  0.100   serine/threonine kinase 3 
STK25                 0.100   serine/threonine kinase 25 
PAK6                  0.098   p21-activated kinase 6 
PAK6                  0.098   p21-activated kinase 6 
PAK6                  0.098   p21-activated kinase 6 
MAP4K5                0.092   mitogen-activated protein kinase kinase kinase kinas...
MAP4K5                0.092   mitogen-activated protein kinase kinase kinase kinas...
MYO3B                 0.092   myosin IIIB isoform 1 
MYO3B                 0.092   myosin IIIB isoform 2 
MAP4K2                0.092   mitogen-activated protein kinase kinase kinase kinas...
PAK3                  0.091   p21-activated kinase 3 isoform d 
PAK3                  0.091   p21-activated kinase 3 isoform c 
PAK3                  0.091   p21-activated kinase 3 isoform b 
PAK3                  0.091   p21-activated kinase 3 isoform a 
PAK3                  0.091   p21-activated kinase 3 isoform a 
PAK3                  0.091   p21-activated kinase 3 isoform a 
MAP4K1                0.090   mitogen-activated protein kinase kinase kinase kina...
MAP4K1                0.090   mitogen-activated protein kinase kinase kinase kinase...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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