Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC12A8 Sequence: fasta or formatted (714aa) NCBI GI: 38569457
Description:

solute carrier family 12, member 8

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         48           2
 C cysteine            2.0         14           1
 D aspartate           2.7         19           1
 E glutamate           5.2         37           1
 F phenylalanine       5.9         42           2
 G glycine             9.1         65           2
 H histidine           1.4         10           2
 I isoleucine          4.8         34           2
 K lysine              2.7         19           2
 L leucine            13.6         97           4
 M methionine          3.1         22           1
 N asparagine          2.5         18           2
 P proline             4.8         34           2
 Q glutamine           5.2         37           2
 R arginine            3.6         26           2
 S serine              9.1         65           2
 T threonine           5.2         37           1
 V valine              7.8         56           2
 W tryptophan          2.0         14           2
 Y tyrosine            2.8         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 12, member 8 
SLC12A2               0.163   solute carrier family 12 (sodium/potassium/chloride t...
SLC12A1               0.157   sodium potassium chloride cotransporter 2 
SLC12A3               0.142   solute carrier family 12, member 3 isoform 3 
SLC12A3               0.142   solute carrier family 12, member 3 isoform 2 
SLC12A3               0.142   solute carrier family 12, member 3 isoform 1 
SLC12A9               0.114   solute carrier family 12 (potassium/chloride transpo...
SLC12A6               0.056   solute carrier family 12, member 6 isoform e 
SLC12A6               0.056   solute carrier family 12, member 6 isoform d 
SLC12A6               0.056   solute carrier family 12, member 6 isoform c 
SLC12A6               0.056   solute carrier family 12, member 6 isoform c 
SLC12A6               0.056   solute carrier family 12, member 6 isoform b 
SLC12A6               0.056   solute carrier family 12, member 6 isoform a 
SLC12A4               0.055   solute carrier family 12, member 4 isoform e 
SLC12A4               0.055   solute carrier family 12, member 4 isoform d 
SLC12A4               0.055   solute carrier family 12, member 4 isoform c 
SLC12A4               0.055   solute carrier family 12, member 4 isoform b 
SLC12A4               0.055   solute carrier family 12, member 4 isoform a 
SLC12A7               0.055   solute carrier family 12 (potassium/chloride transp...
SLC12A5               0.054   solute carrier family 12 (potassium-chloride transp...
SLC12A5               0.054   solute carrier family 12 (potassium-chloride transpo...
SLC7A1                0.024   solute carrier family 7 (cationic amino acid transpor...
SLC7A2                0.023   solute carrier family 7, member 2 isoform 2 
SLC7A8                0.019   solute carrier family 7 (cationic amino acid transpo...
SLC7A2                0.017   solute carrier family 7, member 2 isoform 1 
SLC7A3                0.014   solute carrier family 7 (cationic amino acid transp...
SLC7A3                0.014   solute carrier family 7 (cationic amino acid transp...
SLC7A10               0.011   solute carrier family 7, member 10 
KDM2B                 0.009   F-box and leucine-rich repeat protein 10 isoform b [...
SLC7A11               0.009   solute carrier family 7, (cationic amino acid transpo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press