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Search of human proteins with 42822884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42822884 Ies6-similar protein isoform 2 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42822884 Ies6-similar protein isoform 2 [Homo sapiens] 385 e-107
gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens] 367 e-102
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens] 34 0.087
gi|51173717 actin-binding LIM protein 1 isoform s [Homo sapiens] 32 0.25
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 32 0.25
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 32 0.25
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 32 0.25
gi|27886557 msh homeobox 2 [Homo sapiens] 32 0.33
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.43
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 31 0.57
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 31 0.57
gi|67782356 corneodesmosin precursor [Homo sapiens] 30 1.3
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 28 3.7
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 28 3.7
gi|156139122 CXXC finger 6 [Homo sapiens] 28 3.7
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 28 3.7
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens] 28 3.7
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 28 3.7
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 28 4.8
gi|32698730 nuclear fragile X mental retardation protein interac... 28 4.8
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 28 4.8
gi|197333809 joined to JAZF1 [Homo sapiens] 28 6.3
gi|166197698 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc... 28 6.3
gi|56549696 E1A binding protein p400 [Homo sapiens] 28 6.3
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 28 6.3
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 28 6.3
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 28 6.3
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 27 8.2
gi|223555921 hepatocellular carcinoma related protein 1 isoform ... 27 8.2
gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1 ... 27 8.2
>gi|42822884 Ies6-similar protein isoform 2 [Homo sapiens]
Length = 192
Score = 385 bits (989), Expect = e-107
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS 60
MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS
Sbjct: 1 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMS 60
Query: 61 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW 120
ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW
Sbjct: 61 ENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPW 120
Query: 121 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG 180
QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG
Sbjct: 121 QLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTG 180
Query: 181 YLALRKATSIVP 192
YLALRKATSIVP
Sbjct: 181 YLALRKATSIVP 192
>gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens]
Length = 228
Score = 367 bits (942), Expect = e-102
Identities = 192/228 (84%), Positives = 192/228 (84%), Gaps = 36/228 (15%)
Query: 1 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQ-------- 52
MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQ
Sbjct: 1 MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQTCLSPSTM 60
Query: 53 ----------------------------GISMEAMSENKMVPSEFSTGPVEKAAKPLPFK 84
GISMEAMSENKMVPSEFSTGPVEKAAKPLPFK
Sbjct: 61 IVRPPQPRGTTCLLPSAMIVRPPQPRGNGISMEAMSENKMVPSEFSTGPVEKAAKPLPFK 120
Query: 85 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD 144
DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD
Sbjct: 121 DPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSD 180
Query: 145 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP 192
VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP
Sbjct: 181 VSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP 228
>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
Length = 1621
Score = 33.9 bits (76), Expect = 0.087
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 10 TTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEF 69
TT+ G R +KKR AS S N G Y +K + S + S + S+ + PS+F
Sbjct: 1529 TTTPKGKGRGAKKRKASGSENE---GDYNPGRKTSKTTSKKPKKTSFDQDSDVDIFPSDF 1585
Query: 70 STGP 73
T P
Sbjct: 1586 PTEP 1589
>gi|51173717 actin-binding LIM protein 1 isoform s [Homo sapiens]
Length = 455
Score = 32.3 bits (72), Expect = 0.25
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASP------SHNGSSGG--GYGASKKKKASASSFAQG 53
A+ IP T S PG RN RP S S+ SGG Y A +G
Sbjct: 322 ASHIPSSKTASLPGYGRNGLHRPVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRMDRG 381
Query: 54 ISMEAMSENKMVPSE 68
+SM M E K+ P E
Sbjct: 382 VSMPNMLEPKIFPYE 396
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 32.3 bits (72), Expect = 0.25
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASP------SHNGSSGG--GYGASKKKKASASSFAQG 53
A+ IP T S PG RN RP S S+ SGG Y A +G
Sbjct: 613 ASHIPSSKTASLPGYGRNGLHRPVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRMDRG 672
Query: 54 ISMEAMSENKMVPSE 68
+SM M E K+ P E
Sbjct: 673 VSMPNMLEPKIFPYE 687
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 32.3 bits (72), Expect = 0.25
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASP------SHNGSSGG--GYGASKKKKASASSFAQG 53
A+ IP T S PG RN RP S S+ SGG Y A +G
Sbjct: 585 ASHIPSSKTASLPGYGRNGLHRPVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRMDRG 644
Query: 54 ISMEAMSENKMVPSE 68
+SM M E K+ P E
Sbjct: 645 VSMPNMLEPKIFPYE 659
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 32.3 bits (72), Expect = 0.25
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASP------SHNGSSGG--GYGASKKKKASASSFAQG 53
A+ IP T S PG RN RP S S+ SGG Y A +G
Sbjct: 645 ASHIPSSKTASLPGYGRNGLHRPVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRMDRG 704
Query: 54 ISMEAMSENKMVPSE 68
+SM M E K+ P E
Sbjct: 705 VSMPNMLEPKIFPYE 719
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 32.0 bits (71), Expect = 0.33
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 34 GGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVHSGH 93
GG GA+++++ SS S+EA+ +K P E S P E A+ + + SGH
Sbjct: 29 GGAEGAAEERRVKVSSLP--FSVEALMSDKKPPKEASPLPAESASAGATLRP--LLLSGH 84
Query: 94 GGAVA 98
G A
Sbjct: 85 GAREA 89
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 0.43
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 21 KKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKP 80
K+R +S S + SS +S +S+SS + S + S + PS GP + KP
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP-QALPKP 2662
Query: 81 LPFKDP 86
K P
Sbjct: 2663 ASPKKP 2668
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 31.2 bits (69), Expect = 0.57
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 10 TTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSE- 68
T T G + SK R S GS G G G KK+ A S +Q + E E
Sbjct: 911 TKGTKGKTKPSKTRKKVRSGGGSGGSG-GQVSLKKSKADSCSQAAGTKGAEETSWSGEER 969
Query: 69 ---FSTGPVEKAAKPLPFKDPN 87
+ P KAA P P P+
Sbjct: 970 AAKVPSTPPPKAAPPPPALTPD 991
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 31.2 bits (69), Expect = 0.57
Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 25/173 (14%)
Query: 13 TPGIVRNSKKRPASPSHNGSSGGGYGAS--------KKKKASASSFAQGISMEAMSENKM 64
+P + +RPA G SGGG G ++ K+ + + S N +
Sbjct: 1033 SPPQITIGPQRPAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLL 1092
Query: 65 VPSEFSTGPVEKAAKPLPFKDPNFVHSG--HGGAVAGKKNRTWKNLKQ--------ILAS 114
E S GP + L K+ + SG GG G K K Q + AS
Sbjct: 1093 QSPEPSYGPARPRQQSLS-KEGSIGGSGGSGGGGGGGLKPSITKQHSQTPSTLNPTMPAS 1151
Query: 115 ERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEF 167
ER + W N P + S D + ++Y L Y+ + R ++E+
Sbjct: 1152 ERTVAWVSNMP-HLSADIESAHIEREEYK-----LKEYSKSMDESRLDRVKEY 1198
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 30.0 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 20 SKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPS 67
S + +S SH+GSSG G+S +S+SSF S + +P+
Sbjct: 131 SSQLGSSSSHSGSSGSHSGSSSSHSSSSSSFQFSSSSFQVGNGSALPT 178
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 19 NSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAA 78
+++ + S +G G G G+S +S+SS + S + S + PS S G + +
Sbjct: 433 SNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSS---PSSSSGGESSETS 489
Query: 79 KPLPFKDPNFVHSGHGGAVAGKKNR 103
L F+ N S G + A ++ R
Sbjct: 490 SDL-FEGSNEGSSSSGSSGARREGR 513
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 28.5 bits (62), Expect = 3.7
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 19 NSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAA 78
+++ + S +G G G G+S +S+SS + S + S + PS S G + +
Sbjct: 433 SNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSS---PSSSSGGESSETS 489
Query: 79 KPLPFKDPNFVHSGHGGAVAGKKNR 103
L F+ N S G + A ++ R
Sbjct: 490 SDL-FEGSNEGSSSSGSSGARREGR 513
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 28.5 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 84 KDPNFVHSGHGGAVAGKKNRTWKNLKQILASER 116
K P+ VH+ HG ++ +KN T K K + +R
Sbjct: 1126 KPPSSVHNNHGSSLTKQKNPTQKKTKSTPSRDR 1158
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 3.7
Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 26 SPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKPLPFKD 85
SP NG SG GA + SA S S + + T P P P
Sbjct: 310 SPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSA 369
Query: 86 PNFVHSGHGGAVAGKKNR 103
P+ G GG AG R
Sbjct: 370 PS--SQGRGGRAAGGAGR 385
>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
Length = 1989
Score = 28.5 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 9 ATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKAS 46
+++S G++ ++RP + G SGGG G+S +S
Sbjct: 42 SSSSGGGLLPYPRRRPPHSARGGGSGGGGGSSSSSSSS 79
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 26 SPSHNGSSGGGYGASK 41
SPSH+GS+GGG G+S+
Sbjct: 1063 SPSHHGSAGGGGGSSQ 1078
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 28.1 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 12 STPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISME 57
S ++SKK S S SS G+SK+KKA ++ S+E
Sbjct: 740 SKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVE 785
>gi|32698730 nuclear fragile X mental retardation protein
interacting protein 2 [Homo sapiens]
Length = 695
Score = 28.1 bits (61), Expect = 4.8
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 5 IPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKM 64
IP T+ G + N + + S GY KK+KA +S A+G + ++K+
Sbjct: 186 IPNGVVTNNSGYITNGYMGKGADNDGSGSESGYTTPKKRKARRNS-AKGCENLNIVQDKI 244
Query: 65 VPSEFSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLND 124
+ E S +++ + FK P++ G V G K WK + R P + D
Sbjct: 245 MQQETSVPTLKQGLE--TFK-PDYSEQ-KGNRVDGSK-PIWKYETGPGGTSRGKP-AVGD 298
Query: 125 PNYFSIDAPPSFKPAKKYSD 144
S D+ P +KK+ D
Sbjct: 299 MLRKSSDSKPGVS-SKKFDD 317
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 28.1 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 12 STPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISME 57
S ++SKK S S SS G+SK+KKA ++ S+E
Sbjct: 740 SKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVE 785
>gi|197333809 joined to JAZF1 [Homo sapiens]
Length = 739
Score = 27.7 bits (60), Expect = 6.3
Identities = 17/60 (28%), Positives = 22/60 (36%)
Query: 31 GSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFSTGPVEKAAKPLPFKDPNFVH 90
GS GGG+G S A+ +S + S S+ A LP K P H
Sbjct: 19 GSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSAAAAAGAAVLPVKKPKMEH 78
>gi|166197698 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C [Homo sapiens]
Length = 478
Score = 27.7 bits (60), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 138 PAKKYSDVSGLLANYTDPQSKLRFSTIEEFSY 169
P + Y + GL NY DP+ +++F + + Y
Sbjct: 175 PEEYYPILDGLKRNYNDPEDRVKFRSKQNVDY 206
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 27.7 bits (60), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 10 TTSTPGIVRNSKKRPASPSHNGSS 33
T+ TPG+V ++ +P SP+ N +S
Sbjct: 702 TSRTPGVVASAPTKPQSPAQNATS 725
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 27.7 bits (60), Expect = 6.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASPSHNG----SSGGGYGASKKKKASASSFAQGISME 57
AAQ + S +V+ R + PS G SS G +S ++S+ S ++ S
Sbjct: 408 AAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSS 467
Query: 58 AMSENKMVPSEFSTGPVEKAA 78
+ SE P FS+ E A+
Sbjct: 468 SESEGSK-PPHFSSPEAEPAS 487
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 27.7 bits (60), Expect = 6.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 2 AAQIPIVATTSTPGIVRNSKKRPASPSHNG----SSGGGYGASKKKKASASSFAQGISME 57
AAQ + S +V+ R + PS G SS G +S ++S+ S ++ S
Sbjct: 383 AAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSS 442
Query: 58 AMSENKMVPSEFSTGPVEKAA 78
+ SE P FS+ E A+
Sbjct: 443 SESEGSK-PPHFSSPEAEPAS 462
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 27.7 bits (60), Expect = 6.3
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 9 ATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSE 68
+++S+ +S +S S + SS +S +S+SS + + M E+K PS+
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSK 209
Query: 69 FSTGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQ 110
S K+A FK+P+ H+ + KK + K LK+
Sbjct: 210 DSR--EHKSA----FKEPSRDHN-KSSKESSKKPKENKPLKE 244
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 27.3 bits (59), Expect = 8.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 3 AQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSEN 62
A+ + ++TS G +S +S S + SS G+S +S+SS S +
Sbjct: 18 AEEEMASSTSDSGEESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRK 77
Query: 63 KMVP 66
K VP
Sbjct: 78 KRVP 81
>gi|223555921 hepatocellular carcinoma related protein 1 isoform 2
[Homo sapiens]
Length = 372
Score = 27.3 bits (59), Expect = 8.2
Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 32/182 (17%)
Query: 23 RPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEF-STGPVEKAAKPL 81
+ AS S GS GG ++K+ S S ++++P +F PV P+
Sbjct: 9 KSASSSAAGSPGGLTSLQQQKQRLIESLRN-------SHSRLLPPQFPQEKPVISVYPPI 61
Query: 82 --------------PFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPN- 126
P + +HS G + + WKN + + A P+ ++P+
Sbjct: 62 RHHLMDKQGVYVTSPLVNNFTMHSDLGKIIQSLLDEFWKNPPVLAPTSTAFPYLYSNPSG 121
Query: 127 ---YFSIDAP--PSFKPAKKYSDVSGLLANYTDPQSKLRFSTIE----EFSYIRRLPSDV 177
Y S P P + P + ++ L T S +T + F + LP +
Sbjct: 122 MSPYASQGFPFLPPYPPQEANRSITSLSVADTVSSSTTSHTTAKPAAPSFGVLSNLPLPI 181
Query: 178 VT 179
T
Sbjct: 182 PT 183
>gi|170650661 ectonucleotide pyrophosphatase/phosphodiesterase 1
[Homo sapiens]
Length = 925
Score = 27.3 bits (59), Expect = 8.2
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 31 GSSGGGYGASKKKKASASSFAQGISMEA-------MSENKMVPSEFSTGPVEKAAKPLPF 83
GS GG G + ++ + + +G S A + + + P + P+EKAA+
Sbjct: 10 GSRGGEGGRAPREGPAGNGRDRGRSHAAEAPGDPQAAASLLAPMDVGEEPLEKAARARTA 69
Query: 84 KDPN 87
KDPN
Sbjct: 70 KDPN 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,624,647
Number of Sequences: 37866
Number of extensions: 328941
Number of successful extensions: 1174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 49
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.