Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MGAT4C Sequence: fasta or formatted (478aa) NCBI GI: 166197698
Description:

alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         18           2
 C cysteine            1.3          6           1
 D aspartate           5.6         27           3
 E glutamate           6.3         30           3
 F phenylalanine       6.3         30           1
 G glycine             4.4         21           1
 H histidine           3.3         16           2
 I isoleucine          6.9         33           3
 K lysine              7.5         36           2
 L leucine             9.6         46           2
 M methionine          2.9         14           1
 N asparagine          5.2         25           1
 P proline             3.1         15           2
 Q glutamine           3.3         16           1
 R arginine            5.0         24           2
 S serine              7.5         36           2
 T threonine           4.8         23           1
 V valine              6.1         29           3
 W tryptophan          1.3          6           1
 Y tyrosine            5.6         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc... 
MGAT4A                0.215   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...
MGAT4A                0.211   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc...
MGAT4B                0.196   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluco...
MGAT4B                0.196   alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos...
LOC401980             0.098   PREDICTED: similar to hCG1811644 
LOC401980             0.098   PREDICTED: similar to hCG1811644 
LOC401980             0.098   PREDICTED: similar to hCG1811644 
SEMA3F                0.005   semaphorin 3F 
KIF21A                0.005   kinesin family member 21A 
LOC100291118          0.005   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.005   PREDICTED: hypothetical protein XP_002343203 
KIAA1012              0.005   hypothetical protein LOC22878 
SACS                  0.004   sacsin 
SMCHD1                0.004   structural maintenance of chromosomes flexible hing...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press