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Search of human proteins with 42734379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42734379 THAP domain containing, apoptosis associated
protein 3 [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42734379 THAP domain containing, apoptosis associated protein... 366 e-102
gi|8922446 THAP domain containing, apoptosis associated protein ... 97 7e-21
gi|13899259 THAP domain containing, apoptosis associated protein... 81 5e-16
gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens] 70 7e-13
gi|22749337 THAP domain containing 8 [Homo sapiens] 65 3e-11
gi|31982895 THAP domain containing 4 [Homo sapiens] 62 3e-10
gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens] 54 7e-08
gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens] 54 7e-08
gi|94536788 THAP domain containing 9 [Homo sapiens] 54 9e-08
gi|21389507 THAP domain containing 6 [Homo sapiens] 51 6e-07
gi|9910354 THAP domain containing 10 [Homo sapiens] 44 5e-05
gi|194440673 THAP domain containing 5 isoform 2 [Homo sapiens] 42 3e-04
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 30 1.4
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 30 1.4
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 30 1.4
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 29 1.8
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 29 1.8
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 29 1.8
gi|53759103 importin 8 [Homo sapiens] 29 1.8
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens] 29 2.4
gi|42476206 receptor accessory protein 2 [Homo sapiens] 29 2.4
gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens] 28 3.1
gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens] 28 3.1
gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens] 28 3.1
gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosom... 28 3.1
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 28 3.1
gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo s... 28 3.1
gi|117553627 acetylserotonin O-methyltransferase-like [Homo sapi... 28 3.1
gi|239757326 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|169168415 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
>gi|42734379 THAP domain containing, apoptosis associated protein 3
[Homo sapiens]
Length = 175
Score = 366 bits (940), Expect = e-102
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR
Sbjct: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60
Query: 61 PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVL 120
PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVL
Sbjct: 61 PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVL 120
Query: 121 PEAGAGEDSPGRNMDTALEELQLPPNAEGHVKQAMLFNVENGTPASREALWLSEE 175
PEAGAGEDSPGRNMDTALEELQLPPNAEGHVKQAMLFNVENGTPASREALWLSEE
Sbjct: 121 PEAGAGEDSPGRNMDTALEELQLPPNAEGHVKQAMLFNVENGTPASREALWLSEE 175
>gi|8922446 THAP domain containing, apoptosis associated protein 1
isoform 1 [Homo sapiens]
Length = 213
Score = 97.1 bits (240), Expect = 7e-21
Identities = 45/100 (45%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60
M +SC+A C NRY + K ++FH+FP +RP L KEW + R NFKP +++ ICSEHF
Sbjct: 1 MVQSCSAYGCKNRYD-KDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFT 59
Query: 61 PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASE 100
P+CF N K LK NAVPT+F +P + + +P +
Sbjct: 60 PDCFKRECNNKLLKENAVPTIFLCTEPHDKKEDLLEPQEQ 99
>gi|13899259 THAP domain containing, apoptosis associated protein 2
[Homo sapiens]
Length = 228
Score = 80.9 bits (198), Expect = 5e-16
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFR 60
MP +CAA C Y+ + ++FHRFP P+ KEWV + R NF P +HT +CS+HF
Sbjct: 1 MPTNCAAAGCATTYN-KHINISFHRFPLD-PKRRKEWVRLVRRKNFVPGKHTFLCSKHFE 58
Query: 61 PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASS 106
CF G + LK +AVPT+F F + ++ + ++ N+ S
Sbjct: 59 ASCFDLTGQTRRLKMDAVPTIFDFCTHIKSMKLKSRNLLKKNNSCS 104
>gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens]
Length = 395
Score = 70.5 bits (171), Expect = 7e-13
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 12/129 (9%)
Query: 1 MPKSCAARQCCNRYSSRRK--QLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEH 58
MP+ CAA C NR K +L+F+ FP E L++W+ N+ R ++ P ++ +CS+H
Sbjct: 1 MPRYCAAICCKNRRGRNNKDRKLSFYPFPLHDKERLEKWLKNMKRDSWVPSKYQFLCSDH 60
Query: 59 FRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQ 118
F P+ + LK AVPT+F+ + Q DP+ ++ + + EK +
Sbjct: 61 FTPDSLDIRWGIRYLKQTAVPTIFSLPEDNQ----GKDPSKKKSQKKNLEDEK------E 110
Query: 119 VLPEAGAGE 127
V P+A + E
Sbjct: 111 VCPKAKSEE 119
>gi|22749337 THAP domain containing 8 [Homo sapiens]
Length = 274
Score = 65.1 bits (157), Expect = 3e-11
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 1 MPKSCAARQCCN---RYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSE 57
MPK C A C N R + + ++F++FP L+ W+ ++G ++ P H +CSE
Sbjct: 1 MPKYCRAPNCSNTAGRLGADNRPVSFYKFPLKDGPRLQAWLQHMGCEHWVPSCHQHLCSE 60
Query: 58 HFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRS 117
HF P CF + L+ +AVP++F+ P + R QK P +S
Sbjct: 61 HFTPSCFQWRWGVRYLRPDAVPSIFSRGPPAKSQRRTRSTQKPVSPPPPLQKNTPLP-QS 119
Query: 118 QVLPEAG 124
+P +G
Sbjct: 120 PAIPVSG 126
>gi|31982895 THAP domain containing 4 [Homo sapiens]
Length = 577
Score = 62.0 bits (149), Expect = 3e-10
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 25/161 (15%)
Query: 5 CAARQCCNRYSSRRKQ-LTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFRPEC 63
CAA C NR K+ ++FHRFP + L +W+ + R N+ P +++ +CSEHF +
Sbjct: 5 CAAVNCSNRQGKGEKRAVSFHRFPLKDSKRLIQWLKAVQRDNWTPTKYSFLCSEHFTKDS 64
Query: 64 FS--AFGNRKNLKHNAVPTVFAFQD------------------PTQQVRENTDPASERGN 103
FS + LK AVP++F + T VR ++ A+ RG
Sbjct: 65 FSKRLEDQHRLLKPTAVPSIFHLTEKKRGAGGHGRTRRKDASKATGGVRGHSSAATGRGA 124
Query: 104 A----SSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEE 140
A SSS P ++ A GE +P + A +E
Sbjct: 125 AGWSPSSSGNPMAKPESRRLKQAALQGEATPRAAQEAASQE 165
>gi|56788351 THAP domain containing 7 isoform 2 [Homo sapiens]
Length = 309
Score = 53.9 bits (128), Expect = 7e-08
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 1 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGNFKP-KQH 51
MP+ C+A CC R + +R + ++FHR P W+ N G+G + P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 52 TVICSEHFRPECFSAFG--NRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQK 109
CS+HF +CF G LK AVPT+F + ++R T ++
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHRLKEGAVPTIF---ESFSKLRRTTKTKGHSYPPGPAEV 117
Query: 110 EKTSPCRSQVLPEAGAGEDSP 130
+ CR + G G +P
Sbjct: 118 SRLRRCRKRC--SEGRGPTTP 136
>gi|56788349 THAP domain containing 7 isoform 1 [Homo sapiens]
Length = 309
Score = 53.9 bits (128), Expect = 7e-08
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 1 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNI------GRGNFKP-KQH 51
MP+ C+A CC R + +R + ++FHR P W+ N G+G + P ++
Sbjct: 1 MPRHCSAAGCCTRDTRETRNRGISFHRLPKKDNPRRGLWLANCQRLDPSGQGLWDPASEY 60
Query: 52 TVICSEHFRPECFSAFG--NRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQK 109
CS+HF +CF G LK AVPT+F + ++R T ++
Sbjct: 61 IYFCSKHFEEDCFELVGISGYHRLKEGAVPTIF---ESFSKLRRTTKTKGHSYPPGPAEV 117
Query: 110 EKTSPCRSQVLPEAGAGEDSP 130
+ CR + G G +P
Sbjct: 118 SRLRRCRKRC--SEGRGPTTP 136
>gi|94536788 THAP domain containing 9 [Homo sapiens]
Length = 903
Score = 53.5 bits (127), Expect = 9e-08
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 1 MPKSCAARQCCNRYS--SRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQ------HT 52
M +SC+A C R + SR + L+FH+FP + K W+ + R + + K+
Sbjct: 1 MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSK-WIRAVNRVDPRSKKIWIPGPGA 59
Query: 53 VICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDP 87
++CS+HF+ F ++G R+ LK AVP+V ++ P
Sbjct: 60 ILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIP 94
>gi|21389507 THAP domain containing 6 [Homo sapiens]
Length = 222
Score = 50.8 bits (120), Expect = 6e-07
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 1 MPKSCAARQCCNRY--SSRRKQLTFHRFPFSRPELLKEWVLNIGR------GNFKPKQHT 52
M K C+A C +R +S+ K LTFH FP + ++WVL + R G ++PK+
Sbjct: 1 MVKCCSAIGCASRCLPNSKLKGLTFHVFPTDE-NIKRKWVLAMKRLDVNAAGIWEPKKGD 59
Query: 53 VICSEHFRPECFSAFGNRKNLKHNAVPTVF 82
V+CS HF+ F LK +P++F
Sbjct: 60 VLCSRHFKKTDFDRSAPNIKLKPGVIPSIF 89
>gi|9910354 THAP domain containing 10 [Homo sapiens]
Length = 257
Score = 44.3 bits (103), Expect = 5e-05
Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 18/162 (11%)
Query: 1 MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELL--KEWVLNIGRGNFKPKQHTVICSEH 58
MP C A C N S + + RFP R L +V + +VICS+H
Sbjct: 1 MPARCVAAHCGNTTKSGK---SLFRFPKDRAVRLLWDRFVRGCRADWYGGNDRSVICSDH 57
Query: 59 FRPECFSA---------FGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASE---RGNASS 106
F P CF F R L AVPT+ P + E D A RG +
Sbjct: 58 FAPACFDVSSVIQKNLRFSQRLRLVAGAVPTLHRVPAPAPKRGEEGDQAGRLDTRGELQA 117
Query: 107 SQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEELQLPPNAE 148
++ + +P AG+ + + E +Q P+A+
Sbjct: 118 ARHSEAAP-GPVSCTRPRAGKQAAASQITCENELVQTQPHAD 158
>gi|194440673 THAP domain containing 5 isoform 2 [Homo sapiens]
Length = 353
Score = 42.0 bits (97), Expect = 3e-04
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 43 RGNFKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERG 102
R ++ P ++ +CS+HF P+ + LK AVPT+F+ + Q DP+ ++
Sbjct: 3 RDSWVPSKYQFLCSDHFTPDSLDIRWGIRYLKQTAVPTIFSLPEDNQ----GKDPSKKKS 58
Query: 103 NASSSQKEKTSPCRSQVLPEAGAGE 127
+ + EK +V P+A + E
Sbjct: 59 QKKNLEDEK------EVCPKAKSEE 77
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 68 GNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQ 118
G R L F+ DP + +DP RG A+S+Q+ + + RSQ
Sbjct: 186 GQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQ 236
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 68 GNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQ 118
G R L F+ DP + +DP RG A+S+Q+ + + RSQ
Sbjct: 186 GQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQ 236
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 29.6 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 68 GNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQ 118
G R L F+ DP + +DP RG A+S+Q+ + + RSQ
Sbjct: 186 GQRMPLYRIRAARQFSLHDPPPRSDMESDPCCSRGGAASAQRGEATRPRSQ 236
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 71 KNLKHNAVPTVFAFQD-PTQQVRENTDPASERGNASSSQKEKTSPC---RSQVLPEAGAG 126
K +H A P Q+ + P SE A++S +E+ PC + +V G
Sbjct: 80 KQAQHRAAPGFMCLQEHQSLPGLPEPPPGSEVPRAAASWQEREGPCGTGKGEVTERWSQG 139
Query: 127 EDSPGRNMDTALEELQLPPNAEGHVKQA 154
++ R ++TA++ + G + QA
Sbjct: 140 QEEGQRQLETAVQLRKALVGDRGVIPQA 167
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 71 KNLKHNAVPTVFAFQD-PTQQVRENTDPASERGNASSSQKEKTSPC---RSQVLPEAGAG 126
K +H A P Q+ + P SE A++S +E+ PC + +V G
Sbjct: 80 KQAQHRAAPGFMCLQEHQSLPGLPEPPPGSEVPRAAASWQEREGPCGTGKGEVTERWSQG 139
Query: 127 EDSPGRNMDTALEELQLPPNAEGHVKQA 154
++ R ++TA++ + G + QA
Sbjct: 140 QEEGQRQLETAVQLRKALVGDRGVIPQA 167
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 71 KNLKHNAVPTVFAFQD-PTQQVRENTDPASERGNASSSQKEKTSPC---RSQVLPEAGAG 126
K +H A P Q+ + P SE A++S +E+ PC + +V G
Sbjct: 80 KQAQHRAAPGFMCLQEHQSLPGLPEPPPGSEVPRAAASWQEREGPCGTGKGEVTERWSQG 139
Query: 127 EDSPGRNMDTALEELQLPPNAEGHVKQA 154
++ R ++TA++ + G + QA
Sbjct: 140 QEEGQRQLETAVQLRKALVGDRGVIPQA 167
>gi|53759103 importin 8 [Homo sapiens]
Length = 1037
Score = 29.3 bits (64), Expect = 1.8
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 100 ERGNASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMD--------TALEELQLPPNAEGHV 151
E SS +E+T+ + G GED + D TALE P + + V
Sbjct: 896 EENEEISSDEEETNVTAQAMQSNNGRGEDEEEEDDDWDEEVLEETALEGFSTPLDLDNSV 955
Query: 152 KQAMLFNVENGTPASREALW 171
+ F T SR+A W
Sbjct: 956 DEYQFFTQALITVQSRDAAW 975
>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 89 QQVRENTDPASE---RGNASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEELQ 142
++V ++D +SE RG+A S ++ + P S E AGE+ G + D+ LQ
Sbjct: 241 EEVASDSDESSEGGERGDALSQKRSEKPPAGSICRAEPEAGEEQAGDDRDSGGPVLQ 297
>gi|42476206 receptor accessory protein 2 [Homo sapiens]
Length = 252
Score = 28.9 bits (63), Expect = 2.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 86 DPTQQVRENTDPASERGNASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDT 136
DP +R +T+PA R AS +P R++ + +A E + + T
Sbjct: 189 DPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKT 239
>gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 86 DPTQQVRENTDPASERGN----ASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEEL 141
DPTQQ+ + S G + S E P R V E + S MD++L
Sbjct: 134 DPTQQLTSEKEDDSSVGEMMLLVNGSNPEGEDPEREPVENEDYREKSSDDDEMDSSLVSQ 193
Query: 142 QLPPNAE----------GHVKQAMLFNVENGTP 164
Q P N E + +L +EN TP
Sbjct: 194 QPPDNQEKERLNTSIPQKRKMRNLLVTIENDTP 226
>gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 86 DPTQQVRENTDPASERGN----ASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEEL 141
DPTQQ+ + S G + S E P R V E + S MD++L
Sbjct: 134 DPTQQLTSEKEDDSSVGEMMLLVNGSNPEGEDPEREPVENEDYREKSSDDDEMDSSLVSQ 193
Query: 142 QLPPNAE----------GHVKQAMLFNVENGTP 164
Q P N E + +L +EN TP
Sbjct: 194 QPPDNQEKERLNTSIPQKRKMRNLLVTIENDTP 226
>gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens]
Length = 394
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 86 DPTQQVRENTDPASERGN----ASSSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEEL 141
DPTQQ+ + S G + S E P R V E + S MD++L
Sbjct: 134 DPTQQLTSEKEDDSSVGEMMLLVNGSNPEGEDPEREPVENEDYREKSSDDDEMDSSLVSQ 193
Query: 142 QLPPNAE----------GHVKQAMLFNVENGTP 164
Q P N E + +L +EN TP
Sbjct: 194 QPPDNQEKERLNTSIPQKRKMRNLLVTIENDTP 226
>gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 13 [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 75 HNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVLPEAGAGEDSP 130
H A P + T+ + T ++RG+ +SS+ + SP + G+ E+SP
Sbjct: 132 HRAPPPLVQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTISNEGS-EESP 186
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 65 SAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVLP--- 121
S + +LK +P+ + +REN PA+ + + +K RS +L
Sbjct: 382 SESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANSEATKEAKESKKPESRRSSLLSLMT 441
Query: 122 -EAGAGEDSPGRNMDTALEELQLPPNAEGHVKQAMLFNVENGTPASREA 169
+ + S G N P G K+ ML V+ G AS A
Sbjct: 442 GKKDVAKGSEGEN----------PLTVPGREKEGMLMGVKPGEDASGPA 480
>gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 28.5 bits (62), Expect = 3.1
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 65 SAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKTSPCRSQVLP--- 121
S + +LK +P+ + +REN PA+ + + +K RS +L
Sbjct: 382 SESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANSEATKEAKESKKPESRRSSLLSLMT 441
Query: 122 -EAGAGEDSPGRNMDTALEELQLPPNAEGHVKQAMLFNVENGTPASREA 169
+ + S G N P G K+ ML V+ G AS A
Sbjct: 442 GKKDVAKGSEGEN----------PLTVPGREKEGMLMGVKPGEDASGPA 480
>gi|117553627 acetylserotonin O-methyltransferase-like [Homo
sapiens]
Length = 621
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 70 RKNLKHNAVPTVFAFQD----------PTQQVRENTDPASERGNASSSQKEKTSPCRSQV 119
R+++KH+++P F+D PTQ+ + D +E G A + E +
Sbjct: 221 RRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRET 280
Query: 120 LP 121
LP
Sbjct: 281 LP 282
>gi|239757326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 28.1 bits (61), Expect = 4.1
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 47 KPKQHTVICSEHFR-PECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNAS 105
+P++ V+ S R P R+ A+PT + V+ T+ AS S
Sbjct: 17 RPRKSAVVASLGPRGPPSSPPMCGRRRYSSTAMPT------KAKTVKSVTEKASVPVRTS 70
Query: 106 SSQKEKTSPCRSQVLPEAGAGEDSPGRNMDTALEELQLPPNAEGH 150
K PC +Q P RN TALE + LP +A H
Sbjct: 71 -----KGRPCTAQYTAATDQATPRP-RNTFTALEPVTLPMDASAH 109
>gi|169168415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 28.1 bits (61), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 46 FKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVREN 94
F+ + + + S HFR +C S ++ N FA++ +Q VR N
Sbjct: 49 FQISRVSALISVHFRNDCHSNRSHKNTFTENGEAPGFAYRLTSQSVRGN 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,055,974
Number of Sequences: 37866
Number of extensions: 384149
Number of successful extensions: 1152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 70
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.