Guide to the Human Genome
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Name: LOC100291948 Sequence: fasta or formatted (274aa) NCBI GI: 239754149
Description:

PREDICTED: hypothetical protein XP_002345897

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         26           2
 C cysteine            2.6          7           2
 D aspartate           3.3          9           1
 E glutamate           6.9         19           2
 F phenylalanine       1.1          3           1
 G glycine            10.2         28           3
 H histidine           2.6          7           1
 I isoleucine          1.8          5           1
 K lysine              2.6          7           2
 L leucine             8.8         24           2
 M methionine          1.5          4           1
 N asparagine          0.0          0           0
 P proline            12.0         33           3
 Q glutamine           6.2         17           3
 R arginine           11.7         32           2
 S serine             10.2         28           1
 T threonine           5.1         14           1
 V valine              1.8          5           1
 W tryptophan          1.8          5           2
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345897 
LOC100291512          1.000   PREDICTED: hypothetical protein XP_002346753 
LOC100288180          1.000   PREDICTED: hypothetical protein XP_002342610 
SRRM2                 0.026   splicing coactivator subunit SRm300 
LOC100290372          0.026   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.026   PREDICTED: hypothetical protein XP_002342652 
KIAA1211              0.022   hypothetical protein LOC57482 
KDM1                  0.022   amine oxidase (flavin containing) domain 2 isoform a...
ANKRD43               0.022   ankyrin repeat domain 43 
MECP2                 0.020   methyl CpG binding protein 2 isoform 2 
WNK4                  0.020   WNK lysine deficient protein kinase 4 
LOC100292143          0.020   PREDICTED: hypothetical protein 
LOC100132261          0.020   PREDICTED: similar to hCG2023245 
N4BP3                 0.020   Nedd4 binding protein 3 
LRCH4                 0.020   leucine-rich repeats and calponin homology (CH) doma...
LOC728650             0.020   PREDICTED: hypothetical protein 
CCDC88C               0.018   DVL-binding protein DAPLE 
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
ARMCX2                0.018   ALEX2 protein 
ARMCX2                0.018   ALEX2 protein 
CCNL2                 0.017   cyclin L2 isoform A 
JMY                   0.017   junction-mediating and regulatory protein 
EIF3B                 0.017   eukaryotic translation initiation factor 3, subunit ...
EIF3B                 0.017   eukaryotic translation initiation factor 3, subunit ...
CLIC6                 0.017   chloride intracellular channel 6 
LOC388780             0.017   PREDICTED: hypothetical protein 
LOC100130128          0.017   PREDICTED: hypothetical protein 
LOC388780             0.017   PREDICTED: hypothetical protein 
LOC100130128          0.017   PREDICTED: hypothetical protein 
LOC100130128          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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