Search of human proteins with 42544207

Search of human proteins with 42544207

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42544207 vesicle-associated membrane protein 4 [Homo
sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]      282   7e-77
gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]        85   2e-17
gi|172072620 vesicle-associated membrane protein 2 (synaptobrevi...    82   1e-16
gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Hom...    82   2e-16
gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo...    81   2e-16
gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo...    80   7e-16
gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]       69   1e-12
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho...    64   4e-11
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo...    64   4e-11
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]        62   1e-10
gi|5730120 YKT6 v-SNARE protein [Homo sapiens]                         39   0.001
gi|223972648 t-SNARE domain containing 1 [Homo sapiens]                35   0.027
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]                  33   0.060
gi|21426793 amisyn [Homo sapiens]                                      32   0.17 
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho...    31   0.30 
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho...    31   0.30 
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho...    31   0.30 
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho...    31   0.30 
gi|149363700 syntaxin binding protein 5-like [Homo sapiens]            31   0.39 
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap...    30   0.50 
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]       30   0.66 
gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens]                 30   0.86 
gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens]                 30   0.86 
gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens]                 30   0.86 
gi|7705415 hook homolog 1 [Homo sapiens]                               30   0.86 
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    30   0.86 
gi|110611184 chromodomain helicase DNA binding protein 2 isoform...    30   0.86 
gi|100814339 coiled-coil domain containing 146 [Homo sapiens]          30   0.86 
gi|239047271 autophagy related 2A [Homo sapiens]                       29   1.1  
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    29   1.1  

>gi|42544207 vesicle-associated membrane protein 4 [Homo sapiens]
          Length = 141

 Score =  282 bits (721), Expect = 7e-77
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQV 60
           MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQV
Sbjct: 1   MPPKFKRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQV 60

Query: 61  DEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIM 120
           DEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIM
Sbjct: 61  DEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIM 120

Query: 121 ALVAAILLLVIIILIVMKYRT 141
           ALVAAILLLVIIILIVMKYRT
Sbjct: 121 ALVAAILLLVIIILIVMKYRT 141


>gi|4759300 vesicle-associated membrane protein 3 [Homo sapiens]
          Length = 100

 Score = 85.1 bits (209), Expect = 2e-17
 Identities = 35/87 (40%), Positives = 61/87 (70%)

Query: 50  NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM 109
           N +++  QNQVDEV+D+M+ N+ KV+ER ++L EL D++++L   A+ F   + +L+R+ 
Sbjct: 12  NRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 71

Query: 110 WWRGCKIKAIMALVAAILLLVIIILIV 136
           WW+ CK+ AI   V  I +++II+ +V
Sbjct: 72  WWKNCKMWAIGITVLVIFIIIIIVWVV 98


>gi|172072620 vesicle-associated membrane protein 2 (synaptobrevin
           2) [Homo sapiens]
          Length = 116

 Score = 82.4 bits (202), Expect = 1e-16
 Identities = 36/98 (36%), Positives = 64/98 (65%), Gaps = 4/98 (4%)

Query: 40  GPSGPRFGP----RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNA 95
           G  GP   P     N +++  Q QVDEV+D+M+ N+ KV+ER ++L EL D++++L   A
Sbjct: 15  GEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 74

Query: 96  TAFSNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIII 133
           + F   + +L+R+ WW+  K+  I+ ++ AI+L++II+
Sbjct: 75  SQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIV 112


>gi|40549446 vesicle-associated membrane protein 1 isoform 2 [Homo
           sapiens]
          Length = 117

 Score = 81.6 bits (200), Expect = 2e-16
 Identities = 37/102 (36%), Positives = 67/102 (65%), Gaps = 5/102 (4%)

Query: 40  GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98
           GP GP      N +++  Q QV+EV+D+++ N+ KV+ER ++L EL D++++L   A+ F
Sbjct: 20  GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79

Query: 99  SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIIILIVMKYR 140
            + + +L+R+ WW+ CK+  ++  + AI    I+++IV KYR
Sbjct: 80  ESSAAKLKRKYWWKNCKMMIMLGAICAI----IVVVIVSKYR 117


>gi|7657673 vesicle-associated membrane protein 1 isoform 1 [Homo
           sapiens]
          Length = 118

 Score = 81.3 bits (199), Expect = 2e-16
 Identities = 34/95 (35%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 40  GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98
           GP GP      N +++  Q QV+EV+D+++ N+ KV+ER ++L EL D++++L   A+ F
Sbjct: 20  GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79

Query: 99  SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVIII 133
            + + +L+R+ WW+ CK+  ++  + AI+++VI+I
Sbjct: 80  ESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVI 114


>gi|9257251 vesicle-associated membrane protein 1 isoform 3 [Homo
           sapiens]
          Length = 116

 Score = 79.7 bits (195), Expect = 7e-16
 Identities = 33/94 (35%), Positives = 64/94 (68%), Gaps = 1/94 (1%)

Query: 40  GPSGPRFG-PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAF 98
           GP GP      N +++  Q QV+EV+D+++ N+ KV+ER ++L EL D++++L   A+ F
Sbjct: 20  GPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQF 79

Query: 99  SNRSKQLRRQMWWRGCKIKAIMALVAAILLLVII 132
            + + +L+R+ WW+ CK+  ++  + AI+++VI+
Sbjct: 80  ESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIV 113


>gi|14043026 vesicle-associated membrane protein 8 [Homo sapiens]
          Length = 100

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 25/87 (28%), Positives = 59/87 (67%)

Query: 47  GPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
           G  ND+++++Q++V+ V ++M +N+ +++ RGE L+ L++K+E L   +  F   S+++ 
Sbjct: 7   GGGNDRVRNLQSEVEGVKNIMTQNVERILARGENLEHLRNKTEDLEATSEHFKTTSQKVA 66

Query: 107 RQMWWRGCKIKAIMALVAAILLLVIII 133
           R+ WW+  K+  ++ ++  I++L I++
Sbjct: 67  RKFWWKNVKMIVLICVIVFIIILFIVL 93


>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
           sapiens]
          Length = 179

 Score = 63.9 bits (154), Expect = 4e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 51  DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 110
           DK+   Q QVDE+  +M  NI  V +RGERL+ L DK+E+L D++  F   S+ L R M 
Sbjct: 83  DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMC 142

Query: 111 WRGCKIKAIMALVAAILLLVII 132
            +  K+  I+ +V+ + + +I+
Sbjct: 143 MKNLKLTIIIIIVSIVFIYIIV 164


>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
           sapiens]
          Length = 220

 Score = 63.9 bits (154), Expect = 4e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)

Query: 51  DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 110
           DK+   Q QVDE+  +M  NI  V +RGERL+ L DK+E+L D++  F   S+ L R M 
Sbjct: 124 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMC 183

Query: 111 WRGCKIKAIMALVAAILLLVII 132
            +  K+  I+ +V+ + + +I+
Sbjct: 184 MKNLKLTIIIIIVSIVFIYIIV 205


>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
          Length = 116

 Score = 62.4 bits (150), Expect = 1e-10
 Identities = 28/87 (32%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 52  KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
           +++  Q Q +EV ++M+ N  KV+ERG +L ELQ +S+ L D ++ F+  ++ L ++  W
Sbjct: 5   ELERCQQQANEVTEIMRNNFGKVLERGVKLAELQQRSDQLLDMSSTFNKTTQNLAQKKCW 64

Query: 112 RGCKIKAIMAL-VAAILLLVIIILIVM 137
              + +  + L V  +LL+++I+L+V+
Sbjct: 65  ENIRYRICVGLVVVGVLLIILIVLLVV 91


>gi|5730120 YKT6 v-SNARE protein [Homo sapiens]
          Length = 198

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 51  DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQ 104
           D +  VQ ++DE   ++   +  ++ERGE+LD+L  KSE L   + AF   +++
Sbjct: 137 DPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 190


>gi|223972648 t-SNARE domain containing 1 [Homo sapiens]
          Length = 513

 Score = 34.7 bits (78), Expect = 0.027
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 49  RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
           R + I  +++ + +V  ++++  + V E+GE +D ++   E+ S +A A         R 
Sbjct: 422 REEAILQMESNLLDVNQIIKDLASMVSEQGEAVDSIEASLEAASSHAEAARQLLAGASRH 481

Query: 109 MWWRGCKIKAIMALVAAILLLVIIILIVMKYR 140
              R  KIK          LLVIII+I    R
Sbjct: 482 QLQRH-KIKCCFLSAGVTALLVIIIIIATSVR 512


>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
          Length = 1726

 Score = 33.5 bits (75), Expect = 0.060
 Identities = 20/100 (20%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 6   KRHLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQV-DEVI 64
           + +L+D D  G++K    +  ++D  EE++    G S    G +  K     +++ D+  
Sbjct: 42  EENLDDQDEQGNLKGFINDDDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDF 101

Query: 65  DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQ 104
           D+++EN+   ++RG++   ++  S+   D+   +     +
Sbjct: 102 DLIEENLGVKVKRGQKYRRVKKMSDDEDDDEEEYGKEEHE 141


>gi|21426793 amisyn [Homo sapiens]
          Length = 210

 Score = 32.0 bits (71), Expect = 0.17
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 56  VQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQL 105
           + +  D V   +Q+    + ERGERL   ++K+E L ++A  F+  + +L
Sbjct: 155 LHSAADSVTSAVQKASQALNERGERLGRAEEKTEDLKNSAQQFAETAHKL 204


>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
            sapiens]
          Length = 1972

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 50   NDKIKHVQNQVDEVIDVMQENITKVIERGERL----DELQDKSESLSDNATAFSNRSKQL 105
            NDK+  +QN+V+ V  ++ E   K I+  + +     +LQD  E L +      N S +L
Sbjct: 1279 NDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEETRQKLNVSTKL 1338

Query: 106  RR 107
            R+
Sbjct: 1339 RQ 1340



 Score = 26.6 bits (57), Expect = 7.3
 Identities = 12/61 (19%), Positives = 33/61 (54%)

Query: 49   RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
            +N+K+   +  ++E I  +  N+ +  E+ + L +L++K ES+         + ++ R++
Sbjct: 993  QNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1052

Query: 109  M 109
            +
Sbjct: 1053 L 1053


>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
            sapiens]
          Length = 1979

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 50   NDKIKHVQNQVDEVIDVMQENITKVIERGERL----DELQDKSESLSDNATAFSNRSKQL 105
            NDK+  +QN+V+ V  ++ E   K I+  + +     +LQD  E L +      N S +L
Sbjct: 1286 NDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEETRQKLNVSTKL 1345

Query: 106  RR 107
            R+
Sbjct: 1346 RQ 1347



 Score = 26.6 bits (57), Expect = 7.3
 Identities = 12/61 (19%), Positives = 33/61 (54%)

Query: 49   RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
            +N+K+   +  ++E I  +  N+ +  E+ + L +L++K ES+         + ++ R++
Sbjct: 1000 QNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1059

Query: 109  M 109
            +
Sbjct: 1060 L 1060


>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
            sapiens]
          Length = 1945

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 50   NDKIKHVQNQVDEVIDVMQENITKVIERGERL----DELQDKSESLSDNATAFSNRSKQL 105
            NDK+  +QN+V+ V  ++ E   K I+  + +     +LQD  E L +      N S +L
Sbjct: 1286 NDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEETRQKLNVSTKL 1345

Query: 106  RR 107
            R+
Sbjct: 1346 RQ 1347



 Score = 26.6 bits (57), Expect = 7.3
 Identities = 12/61 (19%), Positives = 33/61 (54%)

Query: 49   RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
            +N+K+   +  ++E I  +  N+ +  E+ + L +L++K ES+         + ++ R++
Sbjct: 1000 QNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1059

Query: 109  M 109
            +
Sbjct: 1060 L 1060


>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
            sapiens]
          Length = 1938

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 50   NDKIKHVQNQVDEVIDVMQENITKVIERGERL----DELQDKSESLSDNATAFSNRSKQL 105
            NDK+  +QN+V+ V  ++ E   K I+  + +     +LQD  E L +      N S +L
Sbjct: 1279 NDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEETRQKLNVSTKL 1338

Query: 106  RR 107
            R+
Sbjct: 1339 RQ 1340



 Score = 26.6 bits (57), Expect = 7.3
 Identities = 12/61 (19%), Positives = 33/61 (54%)

Query: 49   RNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
            +N+K+   +  ++E I  +  N+ +  E+ + L +L++K ES+         + ++ R++
Sbjct: 993  QNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1052

Query: 109  M 109
            +
Sbjct: 1053 L 1053


>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
          Length = 1186

 Score = 30.8 bits (68), Expect = 0.39
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 76   ERGERLDELQDKSESLSDNATAFSNRSKQL 105
            ERG+RL EL++K+  +  +A AFS  + +L
Sbjct: 1145 ERGQRLGELEEKTAGMMTSAEAFSKHAHEL 1174


>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
           sapiens]
          Length = 570

 Score = 30.4 bits (67), Expect = 0.50
 Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 19  KSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQENITKVIERG 78
           + E   + E +  +E++         +   + +KI+  + ++ E  ++MQE   K+ E+ 
Sbjct: 366 RQEEEKIREQEKRQEQE--------AKMWRQEEKIREQEEKIREQEEMMQEQEEKMGEQE 417

Query: 79  ERL----DELQDKSESLSDNATAFSNRSKQLRRQ 108
           E++    +E+Q++ E +         + K++R Q
Sbjct: 418 EKMWEQEEEMQEQEEKMRRQEEKIREQEKKIREQ 451



 Score = 26.2 bits (56), Expect = 9.5
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 27  EDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDE--- 83
           E++  E+E+   R     R   +  KI+  + ++ E  ++MQE   K+ E+  ++ E   
Sbjct: 424 EEEMQEQEEKMRRQEEKIR--EQEKKIREQEEKIREQEEMMQEQEEKMGEQEGKMCEQEA 481

Query: 84  -LQDKSESLSDNATAFSNRSKQLRRQ 108
            +Q++ E +         + K++R Q
Sbjct: 482 KMQEQEEKMRRQEEKIREQEKKIREQ 507



 Score = 26.2 bits (56), Expect = 9.5
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 52  KIKHVQNQVDEVIDVMQENITKVIERGERL----DELQDKSESLSDNATAFSNRSKQLRR 107
           KI+  + ++ E  ++MQE   K+ E+ E++    +++Q++ E +         +  +LR+
Sbjct: 503 KIREQEEKIREQEEMMQEQEEKMWEQEEKMCEQEEKMQEQEEKMRRQEEKMREQEVRLRQ 562

Query: 108 Q 108
           Q
Sbjct: 563 Q 563


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 11  DDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQEN 70
           DD     V +E   L  D  D E     +G SGP     N + + ++ +V E ID  +E 
Sbjct: 765 DDKDAAKVLAEDEELYGDFEDLETGDVHKGKSGP-----NTQNEDIEKEVKEEIDPDEEE 819

Query: 71  ITKV--IERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
             K   +++  +L E+ D +E     +T F +   ++++Q
Sbjct: 820 SAKKKHLDKKRKLKEMFD-AEYDEGESTYFDDLKGEMQKQ 858


>gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens]
          Length = 1260

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 10  NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQE 69
           N  DV    K E R    D  D +     RG   P F   N+++  +  Q+ +V ++ + 
Sbjct: 419 NSSDVDIGEKIENRTERSDVLDGK-----RGAEDPGFIFNNEQLAQMNEQLAQVNELKKM 473

Query: 70  NITKVIERGERLDELQDKSE-----------SLSDNATAFSNRSK 103
            +    E+G+R + L +K E           SLS ++  F   SK
Sbjct: 474 TLQTGFEQGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESK 518


>gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens]
          Length = 1265

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 10  NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQE 69
           N  DV    K E R    D  D +     RG   P F   N+++  +  Q+ +V ++ + 
Sbjct: 419 NSSDVDIGEKIENRTERSDVLDGK-----RGAEDPGFIFNNEQLAQMNEQLAQVNELKKM 473

Query: 70  NITKVIERGERLDELQDKSE-----------SLSDNATAFSNRSK 103
            +    E+G+R + L +K E           SLS ++  F   SK
Sbjct: 474 TLQTGFEQGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESK 518


>gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens]
          Length = 1261

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 10  NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQE 69
           N  DV    K E R    D  D +     RG   P F   N+++  +  Q+ +V ++ + 
Sbjct: 419 NSSDVDIGEKIENRTERSDVLDGK-----RGAEDPGFIFNNEQLAQMNEQLAQVNELKKM 473

Query: 70  NITKVIERGERLDELQDKSE-----------SLSDNATAFSNRSK 103
            +    E+G+R + L +K E           SLS ++  F   SK
Sbjct: 474 TLQTGFEQGDRENVLCNKKEKRITNEQEETYSLSQSSGKFHQESK 518


>gi|7705415 hook homolog 1 [Homo sapiens]
          Length = 728

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 48  PRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRR 107
           P ND +  ++ Q+   ++ +QE + +  E  +R +EL  +  +L D   +  + ++ +  
Sbjct: 168 PPNDAVGELEQQLKRALEELQEALAEKEELRQRCEELDMQVTTLQDEKNSLVSENEMMNE 227

Query: 108 QM 109
           ++
Sbjct: 228 KL 229



 Score = 28.5 bits (62), Expect = 1.9
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 8   HLNDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRF------GPRNDKIKHVQNQVD 61
           HLN  D + + KS      E    E  + F+R     +       G  N++I+ +Q Q++
Sbjct: 439 HLNQTDASAT-KSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIEELQEQLE 497

Query: 62  EVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSK 103
           +    M E  T+     ER+ ELQ + E L  +     ++S+
Sbjct: 498 QKHRKMNELETEQRLSKERIRELQQQIEDLQKSLQEQGSKSE 539


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 1828

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 27  EDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQD 86
           +D SDE++D        P+   R    K+V  + D+  +   +++ ++   GE +DE QD
Sbjct: 205 QDSSDEDDD----DDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMT--GEGVDEQQD 258

Query: 87  KSESL 91
            SE++
Sbjct: 259 NSETI 263


>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
           [Homo sapiens]
          Length = 501

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 27  EDDSDEEEDFFLRGPSGPRFGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQD 86
           +D SDE++D        P+   R    K+V  + D+  +   +++ ++   GE +DE QD
Sbjct: 205 QDSSDEDDD----DDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMT--GEGVDEQQD 258

Query: 87  KSESL 91
            SE++
Sbjct: 259 NSETI 263


>gi|100814339 coiled-coil domain containing 146 [Homo sapiens]
          Length = 955

 Score = 29.6 bits (65), Expect = 0.86
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 50  NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 90
           ND +K V+N+V  ++D  +EN+ K +E    L E++++  +
Sbjct: 270 NDSLKKVENKVSAIVD-EKENVIKEVEGKRALLEIKEREHN 309


>gi|239047271 autophagy related 2A [Homo sapiens]
          Length = 1938

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 28  DDSDEEEDFFLRGPSG-PRFGPRNDKIKHVQNQVDEVIDVMQENITKVIER----GERLD 82
           D  DE+  FF  G SG P+         H+Q+    ++ V++  IT + E     G+RL+
Sbjct: 893 DSDDEDAHFFSVGASGGPQAAAPEAPSLHLQSTFSTLVTVLKGRITALCETKDEGGKRLE 952

Query: 83  ELQDKSESLSDNATAFS 99
            +  +     ++ T FS
Sbjct: 953 AVHGELVLDMEHGTLFS 969


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 13/62 (20%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 50  NDKIKHVQNQVDEVI---DVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 106
           N KI+ +++++ ++      +Q+N+ ++    +RL++L+ +++SL    +      KQL 
Sbjct: 776 NKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLE 835

Query: 107 RQ 108
           ++
Sbjct: 836 KE 837


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,146,309
Number of Sequences: 37866
Number of extensions: 214230
Number of successful extensions: 1409
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 174
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.