Guide to the Human Genome
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Name: STXBP6 Sequence: fasta or formatted (210aa) NCBI GI: 21426793
Description:

amisyn

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         20           2
 C cysteine            2.4          5           1
 D aspartate           3.8          8           1
 E glutamate           7.1         15           2
 F phenylalanine       5.2         11           2
 G glycine             5.2         11           2
 H histidine           2.4          5           2
 I isoleucine          4.8         10           1
 K lysine              9.0         19           3
 L leucine             7.6         16           2
 M methionine          2.4          5           1
 N asparagine          3.8          8           1
 P proline             2.4          5           1
 Q glutamine           7.1         15           2
 R arginine            5.2         11           2
 S serine              8.6         18           1
 T threonine           6.7         14           1
 V valine              4.3          9           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amisyn 
EXOC1                 0.155   exocyst complex component 1 isoform 1 
EXOC1                 0.155   exocyst complex component 1 isoform 2 
EXOC1                 0.155   exocyst complex component 1 isoform 1 
STXBP5L               0.063   syntaxin binding protein 5-like 
STXBP5                0.061   syntaxin binding protein 5 (tomosyn) isoform b [Hom...
STXBP5                0.061   syntaxin binding protein 5 (tomosyn) isoform a [Hom...
VAMP8                 0.025   vesicle-associated membrane protein 8 
VAMP4                 0.018   vesicle-associated membrane protein 4 
GOLGA2                0.018   Golgi autoantigen, golgin subfamily a, 2 
RUFY2                 0.010   RUN and FYVE domain-containing 2 isoform a 
MACF1                 0.010   microfilament and actin filament cross-linker protei...
MACF1                 0.010   microfilament and actin filament cross-linker protei...
CDK5RAP2              0.008   CDK5 regulatory subunit associated protein 2 isoform...
CDK5RAP2              0.008   CDK5 regulatory subunit associated protein 2 isoform...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
KIF17                 0.008   kinesin family member 17 isoform b 
KIF17                 0.008   kinesin family member 17 isoform a 
LOC100291649          0.008   PREDICTED: similar to lactation elevated 1 (predict...
LOC100291103          0.008   PREDICTED: hypothetical protein XP_002348046 
LOC100288854          0.008   PREDICTED: hypothetical protein XP_002344210 
JUN                   0.008   jun oncogene 
PDE4DIP               0.008   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.008   phosphodiesterase 4D interacting protein isoform 5 [...
PDE4DIP               0.008   phosphodiesterase 4D interacting protein isoform 1 ...
VAMP7                 0.008   vesicle-associated membrane protein 7 isoform 2 [Ho...
VAMP7                 0.008   vesicle-associated membrane protein 7 isoform 1 [Homo...
C15orf44              0.008   hypothetical protein LOC81556 isoform 1 
C15orf44              0.008   hypothetical protein LOC81556 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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