Search of human proteins with 126116581

Search of human proteins with 126116581

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
         (346 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|126116581 retina and anterior neural fold homeobox [Homo sapi...   725   0.0  
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...   179   2e-45
gi|24497589 aristaless related homeobox [Homo sapiens]                129   4e-30
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                 125   4e-29
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                121   8e-28
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...   120   1e-27
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]            110   2e-24
gi|14149760 orthopedia homeobox [Homo sapiens]                        110   2e-24
gi|4826912 paired-like homeodomain 3 [Homo sapiens]                   109   3e-24
gi|189083681 paired box gene 6 isoform a [Homo sapiens]               109   3e-24
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                 109   3e-24
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                 109   3e-24
gi|57232759 intestine-specific homeobox [Homo sapiens]                109   4e-24
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]              109   4e-24
gi|7706659 paired related homeobox 2 [Homo sapiens]                   108   7e-24
gi|12707580 paired-like homeobox 2b [Homo sapiens]                    107   1e-23
gi|46249382 paired-like homeobox 2a [Homo sapiens]                    107   2e-23
gi|122937321 UNC homeobox [Homo sapiens]                              106   3e-23
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]         106   3e-23
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]   105   6e-23
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...   105   6e-23
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]        105   8e-23
gi|152963644 paired-like homeodomain transcription factor 1 [Hom...   103   3e-22
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 102   4e-22
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 102   4e-22
gi|34365783 visual system homeobox 2 [Homo sapiens]                   102   7e-22
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                100   1e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                 100   1e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 100   1e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  100   1e-21

>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score =  725 bits (1872), Expect = 0.0
 Identities = 346/346 (100%), Positives = 346/346 (100%)

Query: 1   MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGA 60
           MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGA
Sbjct: 1   MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGA 60

Query: 61  KERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPA 120
           KERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPA
Sbjct: 61  KERDRRLGARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPA 120

Query: 121 TGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRV 180
           TGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRV
Sbjct: 121 TGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRV 180

Query: 181 QVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALP 240
           QVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALP
Sbjct: 181 QVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALP 240

Query: 241 LESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPP 300
           LESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPP
Sbjct: 241 LESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPP 300

Query: 301 PSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKPWQAL 346
           PSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKPWQAL
Sbjct: 301 PSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKPWQAL 346


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score =  179 bits (455), Expect = 2e-45
 Identities = 116/243 (47%), Positives = 133/243 (54%), Gaps = 71/243 (29%)

Query: 106 PGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYS 165
           PGE   + G  +GP         EE PKKKHRRNRTTFTTYQLH+LERAFE SHYPDVYS
Sbjct: 5   PGEGPATEGGGLGPG--------EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYS 56

Query: 166 REELAGKVNLPEVRVQVWFQNRRAKWRRQEKLE-----VSSMKLQDSPLLSFSRSPPSAT 220
           REELA KV+LPEVRVQVWFQNRRAKWRRQE+LE     V++ +L ++P L F+R P    
Sbjct: 57  REELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPALPFARPPAM-- 114

Query: 221 LSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPP 280
                            +LPLE WLGP                GPPA           P 
Sbjct: 115 -----------------SLPLEPWLGP----------------GPPA----------VPG 131

Query: 281 PPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIG 340
            P L  P  GPGLQ    P   +   P F D F L+E        A+LRL AKEH QA+ 
Sbjct: 132 LPRLLGP--GPGLQASFGP---HAFAPTFADGFALEE--------ASLRLLAKEHAQALD 178

Query: 341 KPW 343
           + W
Sbjct: 179 RAW 181


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  129 bits (324), Expect = 4e-30
 Identities = 114/299 (38%), Positives = 131/299 (43%), Gaps = 63/299 (21%)

Query: 82  EPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKL------------SEE 129
           EP   P  A      A       E GE  P   L + P   E K             SEE
Sbjct: 262 EPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGSDSEE 321

Query: 130 EQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRA 189
              K+K RR RTTFT+YQL ELERAF+K+HYPDV++REELA +++L E RVQVWFQNRRA
Sbjct: 322 GLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRA 381

Query: 190 KWRRQEKLEVSSMKLQDSPLLSFSRSPPSAT--LSP-LGAGPGSGGGPAGGALPLESWLG 246
           KWR++EK    +      P L F   P SAT  LSP L A P     PA         L 
Sbjct: 382 KWRKREKAGAQT----HPPGLPFP-GPLSATHPLSPYLDASPFPPHHPA---------LD 427

Query: 247 PPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPP-----FLN----------SPPLGP 291
                  A A  + P   PP    P S + PP   P     FL           SP  G 
Sbjct: 428 SAWTAAAAAAAAAFPSLPPP----PGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGR 483

Query: 292 GLQPLAPPPPSYPCGPGFGDKFPLDE---------------ADPRNSSIAALRLKAKEH 335
               +AP   +           P  E               AD R SSIAALRLKAKEH
Sbjct: 484 LFSTMAPLTSASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEH 542



 Score = 29.6 bits (65), Expect = 4.1
 Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 16/89 (17%)

Query: 209 LLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPL-------PGGG-------- 253
           LL  ++S P+   S         G P   + P E+ L  P        PGGG        
Sbjct: 43  LLGAAQSLPAPLTSRADPEKAVQGSPKSSSAPFEAELHLPPKLRRLYGPGGGRLLQGAAA 102

Query: 254 -ATALQSLPGFGPPAQSLPASYTPPPPPP 281
            A A  +       A + P    PPPPPP
Sbjct: 103 AAAAAAAAAAAAATATAGPRGEAPPPPPP 131


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score =  125 bits (315), Expect = 4e-29
 Identities = 109/346 (31%), Positives = 140/346 (40%), Gaps = 94/346 (27%)

Query: 68  GARPACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEP--------------------- 106
           GAR +  K   + S P P P P P P+ + P+P  P +P                     
Sbjct: 82  GARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQE 141

Query: 107 GEARPSPGLPVGPATGEAKLSEEEQP---------------------------------- 132
           G +  S  L V     E+ L E E P                                  
Sbjct: 142 GSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSP 201

Query: 133 ---------KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVW 183
                    K K RRNRTTFT+YQL ELE+ F+K+HYPDVY+RE+LA + +L E RVQVW
Sbjct: 202 LEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVW 261

Query: 184 FQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLES 243
           FQNRRAKWR++E+        Q     S +   P  T +   A            +   S
Sbjct: 262 FQNRRAKWRKRERF---GQMQQVRTHFSTAYELPLLTRAENYA-----------QIQNPS 307

Query: 244 WLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPP--------PFLNSPPLGP--GL 293
           WLG      GA +   +P    P   +PA  +P   PP         FL+    G   G 
Sbjct: 308 WLG----NNGAAS--PVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQ 361

Query: 294 QPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAI 339
             +     +    PG        E D + SSIAALR+KAKEH  AI
Sbjct: 362 THMGSLFGAASLSPGLNGYELNGEPDRKTSSIAALRMKAKEHSAAI 407


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score =  121 bits (304), Expect = 8e-28
 Identities = 110/330 (33%), Positives = 145/330 (43%), Gaps = 63/330 (19%)

Query: 46  GILGTFPAERGARGAKERDRRLGARPACPKAPEEGSEPSPPPA-------PAPAPE---- 94
           G  GT  A      A  R  RL   PAC        EP+ PPA       P PA      
Sbjct: 27  GPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF 86

Query: 95  YEAPRPYCPKEPGEARPSPGLPV----GPATGEAKLSEEEQP------------------ 132
           YE P     ++  +A   P LP+    GP  G + L     P                  
Sbjct: 87  YEGPAE-AEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSME 145

Query: 133 ----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRR 188
               K K RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA + +L E RVQVWFQNRR
Sbjct: 146 LAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRR 205

Query: 189 AKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPP 248
           AKWR++E+      K+Q+       R+P +A    +   P +   P    L    W  P 
Sbjct: 206 AKWRKRERYG----KIQE------GRNPFTAAYD-ISVLPRTDSHP---QLQNSLWASPG 251

Query: 249 LPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSP---PLGPGLQPLAPPPPSYPC 305
               G   L S  G   P  S P S+ P      F+  P      PG+  +   PP+   
Sbjct: 252 SGSPGGPCLVSPEGIPSPCMS-PYSH-PHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLG- 308

Query: 306 GPGFGDKF-PLDEADPRNSSIAALRLKAKE 334
               G  F P  + D ++ S+ +LR+K KE
Sbjct: 309 ----GHSFEPSSDGDYKSPSLVSLRVKPKE 334


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score =  120 bits (302), Expect = 1e-27
 Identities = 93/309 (30%), Positives = 125/309 (40%), Gaps = 66/309 (21%)

Query: 62  ERDRRLGARPACPKAPEE-----GSEPSP----PPAPAPAPEYEAPRPYCPKEPGEARPS 112
           E +  +G   + P   ++     G EP      PP   P  + E P P    +  +  P 
Sbjct: 56  EAENNVGTEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEP-PLLELKQEQEEPP 114

Query: 113 PGLPVGPATGEA-KLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAG 171
                GP   E  + +E  QP ++ RR RT FT +QL ELE  F++S YPDV +RE LA 
Sbjct: 115 QTTVEGPQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAA 174

Query: 172 KVNLPEVRVQVWFQNRRAKWRRQEKLEVSS------------------------------ 201
           ++NL E RVQVWFQNRRAKW+R +++ +                                
Sbjct: 175 RLNLTEDRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALC 234

Query: 202 ----MKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATAL 257
                +L   P+L     PP   + P+   P     P    +P  S + P  PG     +
Sbjct: 235 VHLVPQLPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPV 294

Query: 258 QSLPGF--------------GPPAQSLPASYTPP----PPPPPFLNSPPLGPGLQPLAPP 299
              P                GPP   +P    PP    PP PP    PP GP + PL P 
Sbjct: 295 PPWPPMAPVPPWPPMAPVPTGPPMAPVPPG--PPMARVPPGPPMARVPP-GPPMAPLPPG 351

Query: 300 PPSYPCGPG 308
           PP  P  PG
Sbjct: 352 PPMAPLPPG 360


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score =  110 bits (275), Expect = 2e-24
 Identities = 96/274 (35%), Positives = 130/274 (47%), Gaps = 21/274 (7%)

Query: 77  PEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKH 136
           P EG+   P           A      K+P +    PG   GP   +A    ++Q ++K 
Sbjct: 51  PVEGATLLPGEDITTVGSTPASLAVSAKDPDK---QPGPQGGPNPSQAG---QQQGQQKQ 104

Query: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
           +R+RT FT  QL+ELER+F K+HYPD++ REELA ++ L E RVQVWFQNRRAKW++++K
Sbjct: 105 KRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164

Query: 197 ---LEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGP----AGGALPLESWLG-PP 248
              +  +   L  +P L    S  +A  + +G    S        A  A+P  S L  PP
Sbjct: 165 TTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPP 224

Query: 249 LPGGGATALQSLP----GFGPPAQSLPASYTPPPPPPPFLNS---PPLGPGLQPLAPPPP 301
             G      QSL       GPP  S+  S +        L S    P  PG+ P + P P
Sbjct: 225 ALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGP 284

Query: 302 SYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
           S   G       P      R +SIA+LR KA EH
Sbjct: 285 SNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEH 318


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score =  110 bits (275), Expect = 2e-24
 Identities = 96/274 (35%), Positives = 130/274 (47%), Gaps = 21/274 (7%)

Query: 77  PEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKH 136
           P EG+   P           A      K+P +    PG   GP   +A    ++Q ++K 
Sbjct: 51  PVEGATLLPGEDITTVGSTPASLAVSAKDPDK---QPGPQGGPNPSQAG---QQQGQQKQ 104

Query: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
           +R+RT FT  QL+ELER+F K+HYPD++ REELA ++ L E RVQVWFQNRRAKW++++K
Sbjct: 105 KRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKK 164

Query: 197 ---LEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGP----AGGALPLESWLG-PP 248
              +  +   L  +P L    S  +A  + +G    S        A  A+P  S L  PP
Sbjct: 165 TTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPP 224

Query: 249 LPGGGATALQSLP----GFGPPAQSLPASYTPPPPPPPFLNS---PPLGPGLQPLAPPPP 301
             G      QSL       GPP  S+  S +        L S    P  PG+ P + P P
Sbjct: 225 ALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGP 284

Query: 302 SYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
           S   G       P      R +SIA+LR KA EH
Sbjct: 285 SNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEH 318


>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
          Length = 302

 Score =  109 bits (273), Expect = 3e-24
 Identities = 97/280 (34%), Positives = 123/280 (43%), Gaps = 38/280 (13%)

Query: 79  EGSEPSPPPAPAPAPEYEAPRPYCP--KEPGEARPSPGLPVGPATGEAKLSEEEQPKKKH 136
           E   P+   + A  P  + P   C   +     + S  LP G         E+   KKK 
Sbjct: 10  EARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSP-------EDGSLKKKQ 62

Query: 137 RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
           RR RT FT+ QL ELE  F+++ YPD+ +REE+A   NL E RV+VWF+NRRAKWR++E 
Sbjct: 63  RRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE- 121

Query: 197 LEVSSMKLQDSPLLSFSRSPPSATLSP--LGAGPGSGGG---PAGGALPLESWLGP-PLP 250
                 + Q + L   S + P   L P      PG   G   P   A PL +   P    
Sbjct: 122 ------RSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFN 175

Query: 251 GGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPP-----LGPGLQPLAP------- 298
                 L S P F PP+ S+ AS  P     P     P     LG G   LAP       
Sbjct: 176 SVNVGPLASQPVFSPPS-SIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGA 234

Query: 299 ---PPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
              P  S           P    DP NSS+A+LRLKAK+H
Sbjct: 235 VSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQH 274


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  109 bits (273), Expect = 3e-24
 Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 131 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAK 190
           Q K+K +RNRT+FT  Q+  LE+ FE++HYPDV++RE LA K++LPE R+QVWF NRRAK
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 264

Query: 191 WRRQEKLEVSSMKLQDSP-----LLSFSRSP----PSATLSPLGAGPGSGGGPAGGALPL 241
           WRR+EKL     +  ++P       SFS S     P  T        GS  G    AL  
Sbjct: 265 WRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTN 324

Query: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLN 285
                PP+P    T   +LP   PP  S  +SY+   P  P +N
Sbjct: 325 TYSALPPMP--SFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVN 365


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score =  109 bits (273), Expect = 3e-24
 Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 131 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAK 190
           Q K+K +RNRT+FT  Q+  LE+ FE++HYPDV++RE LA K++LPE R+QVWF NRRAK
Sbjct: 219 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 278

Query: 191 WRRQEKLEVSSMKLQDSP-----LLSFSRSP----PSATLSPLGAGPGSGGGPAGGALPL 241
           WRR+EKL     +  ++P       SFS S     P  T        GS  G    AL  
Sbjct: 279 WRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTN 338

Query: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLN 285
                PP+P    T   +LP   PP  S  +SY+   P  P +N
Sbjct: 339 TYSALPPMP--SFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVN 379


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  109 bits (273), Expect = 3e-24
 Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 12/164 (7%)

Query: 131 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAK 190
           Q K+K +RNRT+FT  Q+  LE+ FE++HYPDV++RE LA K++LPE R+QVWF NRRAK
Sbjct: 205 QLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 264

Query: 191 WRRQEKLEVSSMKLQDSP-----LLSFSRSP----PSATLSPLGAGPGSGGGPAGGALPL 241
           WRR+EKL     +  ++P       SFS S     P  T        GS  G    AL  
Sbjct: 265 WRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTN 324

Query: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLN 285
                PP+P    T   +LP   PP  S  +SY+   P  P +N
Sbjct: 325 TYSALPPMP--SFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVN 365


>gi|57232759 intestine-specific homeobox [Homo sapiens]
          Length = 245

 Score =  109 bits (272), Expect = 4e-24
 Identities = 49/95 (51%), Positives = 65/95 (68%)

Query: 103 PKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPD 162
           P+ PGE  P      G    +    + ++ +K  RR RTTFTT QLHELE+ F  +HYPD
Sbjct: 49  PEGPGEEGPGEAAASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPD 108

Query: 163 VYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197
           V+ R +LA ++NLPE RVQ+WFQN+RAKWR+QEK+
Sbjct: 109 VHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKI 143


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score =  109 bits (272), Expect = 4e-24
 Identities = 76/207 (36%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
           ++K RRNRTTFT  QL  LE  F ++HYPDV++REELA K+NL E RVQVWFQNRRAKWR
Sbjct: 35  RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94

Query: 193 RQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGG 252
           + E+           P+   +  P     SP    PG        AL  +  LG  +   
Sbjct: 95  KTERGASDQEPGAKEPMAEVTPPPVRNINSP---PPGDQARSKKEALEAQQSLGRTVGPA 151

Query: 253 GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDK 312
           G      LPG         A+Y         L     GP      P P      P +G +
Sbjct: 152 GPFFPSCLPG----TLLNTATYAQALSHVASLKG---GPLCSCCVPDPMGLSFLPTYGCQ 204

Query: 313 FPLDEADPRNSSIAALRLKAKEHIQAI 339
                   R +S+A LR+KA+EH +A+
Sbjct: 205 ------SNRTASVATLRMKAREHSEAV 225


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score =  108 bits (270), Expect = 7e-24
 Identities = 72/174 (41%), Positives = 88/174 (50%), Gaps = 29/174 (16%)

Query: 86  PPAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTT 145
           P A A A E  A  P       EA P  G    P  G A      + KKK RRNRTTF +
Sbjct: 59  PGARAEAREGAAREPSGGSSGSEAAPQDGECPSPGRGSAA-----KRKKKQRRNRTTFNS 113

Query: 146 YQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQ 205
            QL  LER FE++HYPD + REELA +VNL E RVQVWFQNRRAK+RR E+  ++S    
Sbjct: 114 SQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSAS 173

Query: 206 -----------DSPL-----------LSFSRSPPSATLSPLGAGPGSGGGPAGG 237
                      + P+           LS++ S P +T+ P    PGS G    G
Sbjct: 174 LLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPYSTVPPY--SPGSSGPATPG 225


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score =  107 bits (268), Expect = 1e-23
 Identities = 86/244 (35%), Positives = 113/244 (46%), Gaps = 40/244 (16%)

Query: 108 EARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 167
           ++ P   +P    T    L+E    K+K RR RTTFT+ QL ELER F ++HYPD+Y+RE
Sbjct: 74  QSSPYAAVPYKLFTDHGGLNE----KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTRE 129

Query: 168 ELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEV---------SSMKLQDSPLLSFSR---- 214
           ELA K++L E RVQVWFQNRRAK+R+QE+            SS K  DS     S+    
Sbjct: 130 ELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKS 189

Query: 215 SPPSATLSP---------LGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGP 265
           + P +T  P          GA  G GGGP+    P     GP  PGG        PG G 
Sbjct: 190 TDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAP--GAAGPGGPGGE-------PGKGG 240

Query: 266 PAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSI 325
            A +  A+            +     GL     P   +  GPG     P     P  S +
Sbjct: 241 AAAAAAAAAAAAAAA-----AAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVL 295

Query: 326 AALR 329
           ++L+
Sbjct: 296 SSLQ 299


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score =  107 bits (267), Expect = 2e-23
 Identities = 74/183 (40%), Positives = 93/183 (50%), Gaps = 37/183 (20%)

Query: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
           K+K RR RTTFT+ QL ELER F ++HYPD+Y+REELA K++L E RVQVWFQNRRAK+R
Sbjct: 87  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146

Query: 193 RQEKLEVS----------------SMKLQDSPLLSFSRSP----------------PSAT 220
           +QE+   +                S +  DS   + S +P                P  +
Sbjct: 147 KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS 206

Query: 221 LSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPP 280
            SPL    GSG GP  G  PL+  L   + GGG       PG G  A+ L A       P
Sbjct: 207 PSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGG----PGAG-AAELLKAWQPAESGP 261

Query: 281 PPF 283
            PF
Sbjct: 262 GPF 264



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 56  GARGAKERDRRLGARP------ACPKAPEEGSEPSPPPAPAPAPEYEAPRPYCPKEPGEA 109
           GA GAK+ + R  +         C   P+  +   PPPAP  A    +P P         
Sbjct: 159 GAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGP 218

Query: 110 RPSPG-LPV--------------GPATGEAKLSEEEQP 132
            P PG  P+              GP  G A+L +  QP
Sbjct: 219 GPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQP 256


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score =  106 bits (265), Expect = 3e-23
 Identities = 90/263 (34%), Positives = 107/263 (40%), Gaps = 67/263 (25%)

Query: 102 CPKEPGEARPSPGLPVGPATG----EAKLSEEEQPKK-----KHRRNRTTFTTYQLHELE 152
           C        P+P LP     G      KLS+   P K     K RR RT FT +QL ELE
Sbjct: 62  CAAAASVVNPTPLLPAACGVGGDGQPFKLSDSGDPDKESPGCKRRRTRTNFTGWQLEELE 121

Query: 153 RAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQE----------------- 195
           +AF +SHYPDV+ RE LA +++L E RVQVWFQNRRAKWR++E                 
Sbjct: 122 KAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAHNSHPTT 181

Query: 196 -----------------KLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGA 238
                            K+E    K +   L S  R   S     L + P S     GG 
Sbjct: 182 CSGEPMDPEEIARKELEKMEKKKRKHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGG 241

Query: 239 LPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPP----------PPFLNSPP 288
           L  E    PP P   A         GP A +  A+ T P PP          P F  S  
Sbjct: 242 LSPE----PPEPPPPAAK-------GPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQR 290

Query: 289 LGPGLQPLAPPP---PSYPCGPG 308
            G G QP    P    +  CGPG
Sbjct: 291 SGAGPQPRPGRPADKDAASCGPG 313



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 73  CPKAPEEGSEPSPPPAPAPAPEYEAPRPYCP-KEPGEAR-PSPGLPVGPATGEAK 125
           C  A   G  P PPPAP+P P    PRP  P +EP     P PG   GP+  E +
Sbjct: 476 CADAGTAGPAP-PPPAPSPRP---GPRPPSPAEEPATCGVPEPGAAAGPSPPEGE 526



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 23/100 (23%)

Query: 207 SPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPP 266
           +P  +F+R  P A  SP        G PA    P             A+A  +  G G  
Sbjct: 434 APDSAFARRSPDAVASP--------GAPAPAPAPFRDL---------ASAAATEGGGGDC 476

Query: 267 AQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCG 306
           A +  A   PPPP P    SP   PG +P +P      CG
Sbjct: 477 ADAGTAGPAPPPPAP----SP--RPGPRPPSPAEEPATCG 510


>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
          Length = 365

 Score =  106 bits (264), Expect = 3e-23
 Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 15/128 (11%)

Query: 74  PKAPEEGSEPSPPPAPAPAP-----EYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSE 128
           P  P  G EP+ P AP+  P     +  +       E  ++     L   P  G      
Sbjct: 107 PFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG------ 160

Query: 129 EEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRR 188
               K+K RR+RT FT +QL ELE+AF ++HYPDVY+RE LA K  LPE R+QVWFQNRR
Sbjct: 161 ----KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRR 216

Query: 189 AKWRRQEK 196
           AKWR++EK
Sbjct: 217 AKWRKREK 224



 Score = 34.7 bits (78), Expect = 0.13
 Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 223 PLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPP- 281
           P  AGPG G G  G A+        P PG G        G  P    L   +   PP   
Sbjct: 44  PAPAGPGQGSGCEGPAV-------APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAA 96

Query: 282 ----------PFLNSPPLGPGLQPLAPPPPSYP 304
                     PFL  PP GP  +P AP  PS P
Sbjct: 97  RAPCLLLADVPFL--PPRGP--EPAAPLAPSRP 125


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score =  105 bits (262), Expect = 6e-23
 Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 112 SPGLPVG---PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREE 168
           SPGL  G   P     +L+ EE+ K+K RRNRTTF + QL  LER FE++HYPD + RE+
Sbjct: 67  SPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVRED 126

Query: 169 LAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
           LA +VNL E RVQVWFQNRRAK+RR E+
Sbjct: 127 LARRVNLTEARVQVWFQNRRAKFRRNER 154


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score =  105 bits (262), Expect = 6e-23
 Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 112 SPGLPVG---PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREE 168
           SPGL  G   P     +L+ EE+ K+K RRNRTTF + QL  LER FE++HYPD + RE+
Sbjct: 67  SPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVRED 126

Query: 169 LAGKVNLPEVRVQVWFQNRRAKWRRQEK 196
           LA +VNL E RVQVWFQNRRAK+RR E+
Sbjct: 127 LARRVNLTEARVQVWFQNRRAKFRRNER 154


>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
          Length = 292

 Score =  105 bits (261), Expect = 8e-23
 Identities = 84/239 (35%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 104 KEPGEARPSPGLPVGPATGEAKLSEEE--QPKKKHRRNRTTFTTYQLHELERAFEKSHYP 161
           KE G AR + G+       E   SE+E  Q K K RR+RT FT  QL+ELER F+++HYP
Sbjct: 83  KEFGTARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYP 142

Query: 162 DVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATL 221
           D + REEL+ ++ L E RVQVWFQNRRAK R+QE      + L  +  L   R  P   +
Sbjct: 143 DAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTANHLDACRVAPYVNM 202

Query: 222 SPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPP 281
             L              +P +         G A A   L     P  +  A Y   PPPP
Sbjct: 203 GAL-------------RMPFQQVQAQLQLEGVAHAHPHL----HPHLAAHAPYLMFPPPP 245

Query: 282 PFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIG 340
             L    L       A    +              +++ +NSSIA LRLKA++H +A+G
Sbjct: 246 FGLPIASLAESASAAAVVAAA-------------AKSNSKNSSIADLRLKARKHAEALG 291


>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
           sapiens]
          Length = 314

 Score =  103 bits (256), Expect = 3e-22
 Identities = 93/292 (31%), Positives = 121/292 (41%), Gaps = 49/292 (16%)

Query: 79  EGSEPSPPPAPAPAPEYEAPRPYCPKEPGEARPSPG----LPVGPATGEAKLSEEE---- 130
           EG  P PPP     P +   RP  P+EP E   S      LP     GE K  E+     
Sbjct: 15  EGLRPPPPPPHDMGPAFHLARPADPREPLENSASESSDTELPEKERGGEPKGPEDSGAGG 74

Query: 131 ---------QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
                      KKK RR RT FT+ QL ELE  F+++ YPD+  REE+A   NL E RV+
Sbjct: 75  TGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVR 134

Query: 182 VWFQNRRAKWRRQEK-LEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALP 240
           VWF+NRRAKWR++E+  ++   K    P  S    P     +   AG       A    P
Sbjct: 135 VWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYA---AGYSYNNWAAKSLAP 191

Query: 241 LESWLGPPLPGGGATALQSLPGFGPP----AQSLPASYTP---PPPPPPFLN-------- 285
                         + L S   F  P    + ++P+S  P   P  P   LN        
Sbjct: 192 APLSTKSFTFFNSMSPLSSQSMFSAPSSISSMTMPSSMGPGAVPGMPNSGLNNINNLTGS 251

Query: 286 --SPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEH 335
             +  + PG  P   P   Y               D  NSS+A+LRLK+K+H
Sbjct: 252 SLNSAMSPGACPYGTPASPYSV-----------YRDTCNSSLASLRLKSKQH 292



 Score = 29.3 bits (64), Expect = 5.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 289 LGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSS 324
           L  GL+P  PPPP +  GP F    P D  +P  +S
Sbjct: 13  LPEGLRP--PPPPPHDMGPAFHLARPADPREPLENS 46


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  102 bits (255), Expect = 4e-22
 Identities = 68/186 (36%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 209 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 268

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 269 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 328

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 329 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 387

Query: 293 LQPLAP 298
           L P  P
Sbjct: 388 LSPQVP 393


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  102 bits (255), Expect = 4e-22
 Identities = 68/186 (36%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 209 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 268

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 269 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 328

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 329 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 387

Query: 293 LQPLAP 298
           L P  P
Sbjct: 388 LSPQVP 393


>gi|34365783 visual system homeobox 2 [Homo sapiens]
          Length = 361

 Score =  102 bits (253), Expect = 7e-22
 Identities = 46/73 (63%), Positives = 59/73 (80%)

Query: 124 AKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVW 183
           +K +  +  K+K RR+RT FT+YQL ELE+AF ++HYPDVY+RE LA K  LPE R+QVW
Sbjct: 136 SKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVW 195

Query: 184 FQNRRAKWRRQEK 196
           FQNRRAKWR++EK
Sbjct: 196 FQNRRAKWRKREK 208


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  100 bits (250), Expect = 1e-21
 Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 208 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 267

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 268 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 327

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 328 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 386

Query: 293 LQP 295
           L P
Sbjct: 387 LSP 389


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score =  100 bits (250), Expect = 1e-21
 Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 209 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 268

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 269 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 328

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 329 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 387

Query: 293 LQP 295
           L P
Sbjct: 388 LSP 390


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  100 bits (250), Expect = 1e-21
 Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 209 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 268

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 269 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 328

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 329 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 387

Query: 293 LQP 295
           L P
Sbjct: 388 LSP 390


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  100 bits (250), Expect = 1e-21
 Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 15/183 (8%)

Query: 127 SEEEQP-KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
           SE + P K+K RR+RTTFT  QL ELERAFE++HYPD+Y+REELA +  L E RVQVWF 
Sbjct: 209 SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFS 268

Query: 186 NRRAKWRRQEKLE------------VSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGG 233
           NRRA+WR+Q                     +   P    S +    T  P      S   
Sbjct: 269 NRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV 328

Query: 234 PAGGALPLESWLGPPLPGG-GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPG 292
                LP  +     +P    +++   LP       S   S+ PP  P   +N P +G G
Sbjct: 329 HRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMN-PTIGNG 387

Query: 293 LQP 295
           L P
Sbjct: 388 LSP 390


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,856,113
Number of Sequences: 37866
Number of extensions: 1763794
Number of successful extensions: 36789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 1558
Number of HSP's that attempted gapping in prelim test: 13243
Number of HSP's gapped (non-prelim): 15642
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.