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Search of human proteins with 42544169
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42544169 excision repair cross-complementing 1 isoform 1
[Homo sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42544169 excision repair cross-complementing 1 isoform 1 [Hom... 655 0.0
gi|4503599 excision repair cross-complementing 1 isofrom 2 [Homo... 570 e-163
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 37 0.018
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 37 0.018
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 37 0.018
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 37 0.018
gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 36 0.053
gi|21361699 sphingosine kinase 2 [Homo sapiens] 35 0.069
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 35 0.12
gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapi... 33 0.26
gi|4503129 catenin, alpha-like 1 [Homo sapiens] 33 0.26
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.45
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.45
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 32 0.58
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 32 0.58
gi|119943102 CREB binding protein isoform b [Homo sapiens] 32 0.76
gi|119943104 CREB binding protein isoform a [Homo sapiens] 32 0.76
gi|91982772 mucin 17 [Homo sapiens] 32 1.00
gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo ... 31 1.3
gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo ... 31 1.3
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 31 1.3
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 31 1.3
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 31 1.3
gi|224282174 DH and coiled-coil domain-containing protein [Homo ... 31 1.7
gi|117938768 GNAS complex locus alex [Homo sapiens] 31 1.7
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 31 1.7
gi|41406089 SRY-box 13 [Homo sapiens] 31 1.7
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 30 2.2
gi|91208420 bassoon protein [Homo sapiens] 30 2.9
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 30 2.9
>gi|42544169 excision repair cross-complementing 1 isoform 1 [Homo
sapiens]
Length = 323
Score = 655 bits (1690), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY 60
MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
Sbjct: 1 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY 60
Query: 61 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP 120
AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
Sbjct: 61 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP 120
Query: 121 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ 180
WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
Sbjct: 121 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ 180
Query: 181 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT 240
ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
Sbjct: 181 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT 240
Query: 241 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK 300
TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK
Sbjct: 241 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRALGKNPRSWGKERAPNK 300
Query: 301 HNLRPQSFKVKKEPKTRHSGFRL 323
HNLRPQSFKVKKEPKTRHSGFRL
Sbjct: 301 HNLRPQSFKVKKEPKTRHSGFRL 323
>gi|4503599 excision repair cross-complementing 1 isofrom 2 [Homo
sapiens]
Length = 297
Score = 570 bits (1470), Expect = e-163
Identities = 283/285 (99%), Positives = 283/285 (99%)
Query: 1 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY 60
MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY
Sbjct: 1 MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTY 60
Query: 61 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP 120
AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP
Sbjct: 61 AEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP 120
Query: 121 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ 180
WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ
Sbjct: 121 WEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQVDVKDPQQ 180
Query: 181 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT 240
ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT
Sbjct: 181 ALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLT 240
Query: 241 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKVRAL 285
TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQK R L
Sbjct: 241 TVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRL 285
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 37.4 bits (85), Expect = 0.018
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSA------QAAPQTYAEYA 64
PQ PA F I L +P G ++P F S+P A +A+P T A
Sbjct: 459 PQSVPSPAPTPFPIEL----LPLGYSEPAFGPCFSMPRGKPPAPSPRGQKASPPTLAPAT 514
Query: 65 ISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKF 115
S P AG+ P ++ L P QAL+P S++++ SP V +F
Sbjct: 515 ASPPTT-AGSNNPCLTQLLTAAKPEQALEPPLVSSTLLRSPGSPQETVPEF 564
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 37.4 bits (85), Expect = 0.018
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSA------QAAPQTYAEYA 64
PQ PA F I L +P G ++P F S+P A +A+P T A
Sbjct: 459 PQSVPSPAPTPFPIEL----LPLGYSEPAFGPCFSMPRGKPPAPSPRGQKASPPTLAPAT 514
Query: 65 ISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKF 115
S P AG+ P ++ L P QAL+P S++++ SP V +F
Sbjct: 515 ASPPTT-AGSNNPCLTQLLTAAKPEQALEPPLVSSTLLRSPGSPQETVPEF 564
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 37.4 bits (85), Expect = 0.018
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSA------QAAPQTYAEYA 64
PQ PA F I L +P G ++P F S+P A +A+P T A
Sbjct: 459 PQSVPSPAPTPFPIEL----LPLGYSEPAFGPCFSMPRGKPPAPSPRGQKASPPTLAPAT 514
Query: 65 ISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKF 115
S P AG+ P ++ L P QAL+P S++++ SP V +F
Sbjct: 515 ASPPTT-AGSNNPCLTQLLTAAKPEQALEPPLVSSTLLRSPGSPQETVPEF 564
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 37.4 bits (85), Expect = 0.018
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSA------QAAPQTYAEYA 64
PQ PA F I L +P G ++P F S+P A +A+P T A
Sbjct: 459 PQSVPSPAPTPFPIEL----LPLGYSEPAFGPCFSMPRGKPPAPSPRGQKASPPTLAPAT 514
Query: 65 ISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKF 115
S P AG+ P ++ L P QAL+P S++++ SP V +F
Sbjct: 515 ASPPTT-AGSNNPCLTQLLTAAKPEQALEPPLVSSTLLRSPGSPQETVPEF 564
>gi|157671953 solute carrier family 4, anion exchanger, member 3
isoform 2 [Homo sapiens]
Length = 1259
Score = 35.8 bits (81), Expect = 0.053
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 11 PQPSGPPARKKFVIPLDEDEVP--PGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQP 68
P PSG P + KF I DED+ P PG A T+ LP+V +PQ ++ S+
Sbjct: 155 PPPSGTPQKAKFSIGSDEDDSPGLPGRA----AVTKPLPSVGPHTDKSPQ-HSSRPCSEL 209
Query: 69 LEGAGATCPTGSEP 82
+G G T S P
Sbjct: 210 RDGDGTTDLALSSP 223
>gi|21361699 sphingosine kinase 2 [Homo sapiens]
Length = 654
Score = 35.4 bits (80), Expect = 0.069
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 3 PGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLP-TVDTSAQAAPQTYA 61
P + P P+ R K + L D PP PL RS LP + A A+P +
Sbjct: 380 PATVEPASPTPAHSLPRAKSELTLTPDPAPPMAHSPLHRSVSDLPLPLPQPALASPGSPE 439
Query: 62 EYAISQPLEG----AGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVR 117
I G AG G PL+ + P + PG+ + + SP G PV+
Sbjct: 440 PLPILSLNGGGPELAGDWGGAGDAPLSPD-PLLSSPPGS-PKAALHSPVSEGAPVIPPSS 497
Query: 118 NVPWEFGDVIPDYVLGQSTC 137
+P PD +G STC
Sbjct: 498 GLPLP----TPDARVGASTC 513
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 34.7 bits (78), Expect = 0.12
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 11 PQPSGPPARKKFVIPLDEDEVP--PGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQP 68
P PSG P + KF I DED+ P PG A T+ LP+V +PQ ++ S P
Sbjct: 155 PPPSGTPQKAKFSIGSDEDDSPGLPGRA----AVTKPLPSVGPHTDKSPQ----HSSSSP 206
Query: 69 LEGAGATCPTGSE-----PLAGETPNQALKPGA 96
A A+ G + P A + L PG+
Sbjct: 207 SPRARASRLAGEKSRPWSPSASYDLRERLCPGS 239
>gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo
sapiens]
Length = 1188
Score = 33.5 bits (75), Expect = 0.26
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 2 DPGKDKEGVPQPSG-----PPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAA 56
D G + E V + +G PP + P + + PG +K S +L VD+ ++
Sbjct: 521 DQGSNSEKVAEEAGEKGPTPPLPSAPLAPEKDSALVPGASKQPLTSPSAL--VDSKQESK 578
Query: 57 PQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSI 101
+ E S+P E + + PT PLA + + K A ++ I
Sbjct: 579 LCCFTESPESEPQEASFPSFPTTQPPLANQNETEDDKLPAMADYI 623
>gi|4503129 catenin, alpha-like 1 [Homo sapiens]
Length = 734
Score = 33.5 bits (75), Expect = 0.26
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 172 QVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDF 231
Q D+KD ++ K A +L CT++L + + R+ A++ K K+ D
Sbjct: 212 QNDLKDEKKKAKMAAARAVLEKCTMMLLTASKTCLRHPNCESAHKNKEGVFDRMKVALD- 270
Query: 232 VSRVTECLTTVKSVNKTD--SQTLLTTFGSLEQLIAASREDL 271
+V E +T K +TD S ++ T + I A RE+L
Sbjct: 271 --KVIEIVTDCKPNGETDISSISIFTGIKEFKMNIEALRENL 310
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.7 bits (73), Expect = 0.45
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 3 PGKDKEGVP-QPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYA 61
PG ++G P Q PP ++ + L P G P + + ++QAAP T
Sbjct: 472 PGPQRQGPPLQQRPPPQGQQHLSGLGP---PAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 62 EYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVS----PRQRGNP 111
+ S+P+ G G P + P A +P + P + VS P+ G P
Sbjct: 529 QGRQSRPVAG-GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAP 581
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.7 bits (73), Expect = 0.45
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 3 PGKDKEGVP-QPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYA 61
PG ++G P Q PP ++ + L P G P + + ++QAAP T
Sbjct: 472 PGPQRQGPPLQQRPPPQGQQHLSGLGP---PAGSPLPQRLPSPTSAPQQPASQAAPPTQG 528
Query: 62 EYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVS----PRQRGNP 111
+ S+P+ G G P + P A +P + P + VS P+ G P
Sbjct: 529 QGRQSRPVAG-GPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAP 581
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 32.3 bits (72), Expect = 0.58
Identities = 36/139 (25%), Positives = 46/139 (33%), Gaps = 26/139 (18%)
Query: 4 GKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEY 63
GK ++G+P GPP PG+ KP F P D P
Sbjct: 332 GKGEQGLPGLPGPPGL-------------PGIGKPGFPG----PKGDRGMGGVPGALGPR 374
Query: 64 AISQPLEGAGATCPTGSEPLAG-----ETPNQALKPGAKSNSIIVSPR----QRGNPVLK 114
P+ G P G L G P PG K IV P+ +G P L+
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQ 434
Query: 115 FVRNVPWEFGDVIPDYVLG 133
P G+V P + G
Sbjct: 435 GFPGKPGFLGEVGPPGMRG 453
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 32.3 bits (72), Expect = 0.58
Identities = 36/139 (25%), Positives = 46/139 (33%), Gaps = 26/139 (18%)
Query: 4 GKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEY 63
GK ++G+P GPP PG+ KP F P D P
Sbjct: 332 GKGEQGLPGLPGPPGL-------------PGIGKPGFPG----PKGDRGMGGVPGALGPR 374
Query: 64 AISQPLEGAGATCPTGSEPLAG-----ETPNQALKPGAKSNSIIVSPR----QRGNPVLK 114
P+ G P G L G P PG K IV P+ +G P L+
Sbjct: 375 GEKGPIGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQ 434
Query: 115 FVRNVPWEFGDVIPDYVLG 133
P G+V P + G
Sbjct: 435 GFPGKPGFLGEVGPPGMRG 453
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 32.0 bits (71), Expect = 0.76
Identities = 22/88 (25%), Positives = 31/88 (35%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQPLE 70
PQP+ P V + P + P TQS PTV +AQA + + P
Sbjct: 842 PQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 901
Query: 71 GAGATCPTGSEPLAGETPNQALKPGAKS 98
+ P+ + P L A S
Sbjct: 902 ATPQSSQQQPTPVHAQPPGTPLSQAAAS 929
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 32.0 bits (71), Expect = 0.76
Identities = 22/88 (25%), Positives = 31/88 (35%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQPLE 70
PQP+ P V + P + P TQS PTV +AQA + + P
Sbjct: 880 PQPAAPTQPSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 939
Query: 71 GAGATCPTGSEPLAGETPNQALKPGAKS 98
+ P+ + P L A S
Sbjct: 940 ATPQSSQQQPTPVHAQPPGTPLSQAAAS 967
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 31.6 bits (70), Expect = 1.00
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 8 EGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQ 67
EG P+ P+ PL V ST S +DTS P T + A S
Sbjct: 1735 EGTSMPNSTPSEG--TTPLTSIPVSTTPVLSSEASTLSATPIDTST---PVTTSTEATSS 1789
Query: 68 PLEGAGATCPT-----GSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVL 113
P G + PT G PL + L ++++++ +P +PV+
Sbjct: 1790 PTTAEGTSIPTSTLSEGMTPLTSTPVSHTLVANSEASTLSTTPVDSNSPVV 1840
>gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo
sapiens]
Length = 344
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 71 GAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPR---QRGNPVL 113
G G GS+ LA P +A +PGA S S+ + PR RG P L
Sbjct: 229 GCGPIRLFGSQALAHRRPEEARRPGASSPSLSLQPRCVQARGPPRL 274
>gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo
sapiens]
Length = 302
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 71 GAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPR---QRGNPVL 113
G G GS+ LA P +A +PGA S S+ + PR RG P L
Sbjct: 218 GCGPIRLFGSQALAHRRPEEARRPGASSPSLSLQPRCVQARGPPRL 263
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 154 HGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYK 213
HG L ++ A +L ++KD Q L+ K L LA A +Y + +
Sbjct: 660 HGTLSGGARSQAASILTKFQELKDVQDELR--IKENELRALEEELAGLKNTAEKYRQLKQ 717
Query: 214 AYEQKP--ADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTT 256
+E K ADLL KL+Q + E L +K + +TL T
Sbjct: 718 QWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNT 762
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 154 HGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYK 213
HG L ++ A +L ++KD Q L+ K L LA A +Y + +
Sbjct: 660 HGTLSGGARSQAASILTKFQELKDVQDELR--IKENELRALEEELAGLKNTAEKYRQLKQ 717
Query: 214 AYEQKP--ADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTT 256
+E K ADLL KL+Q + E L +K + +TL T
Sbjct: 718 QWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNT 762
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 154 HGRLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYK 213
HG L ++ A +L ++KD Q L+ K L LA A +Y + +
Sbjct: 660 HGTLSGGARSQAASILTKFQELKDVQDELR--IKENELRALEEELAGLKNTAEKYRQLKQ 717
Query: 214 AYEQKP--ADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTT 256
+E K ADLL KL+Q + E L +K + +TL T
Sbjct: 718 QWEMKTEEADLLQTKLQQSSYHKQQEELDALKKTIEESEETLKNT 762
>gi|224282174 DH and coiled-coil domain-containing protein [Homo
sapiens]
Length = 844
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 3 PGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAE 62
P + +P+ + PA L+ G AKPL RS + P + AP+ Y+
Sbjct: 669 PEHPLQPLPKSATSPAGSSSAYKLEAAAQAHGKAKPLSRSLKEFPRAPPADGVAPRLYST 728
Query: 63 YAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQR 108
+ S G P +E A A A+ S P+QR
Sbjct: 729 RSSS------GGRAPIKAERAAQAHGPAAAAVAARGASRTFFPQQR 768
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 30.8 bits (68), Expect = 1.7
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 12 QPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPT-VDTSAQAAPQTYAEYAISQPLE 70
QP P R+ +PL + +PPG K R Q LP D + + P + L
Sbjct: 422 QPMSPQLRQTQGLPLPQPLLPPGQPKSAGRPLQPLPPGPDARSISDPPAPRSRLPIRLLR 481
Query: 71 GAGATCPTGSEPLA 84
G A P G+ P A
Sbjct: 482 GLLARLPGGASPRA 495
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 30.8 bits (68), Expect = 1.7
Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 9 GVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVD-----------TSAQAAP 57
G P P GPP + + PL+ +EV VA+ F L T+ T P
Sbjct: 359 GPPGPPGPP--RNVLSPLNLEEVQKKVAEQTFIKDDYLETISSPKDFGLGQRATPPPPPP 416
Query: 58 QTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVL 113
TY +S P G+G T S + P L P + PR P L
Sbjct: 417 PTY-RTVVSSPGPGSGPGPGTTSGASSPARPATPLVPCRSTTPPPPPPRPPSRPKL 471
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 30.8 bits (68), Expect = 1.7
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 13 PSGPPARKKFVIPLDED---EVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQPL 69
P+ PP+ + + D + P KP+ Q L + P A + PL
Sbjct: 230 PAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGAMATH---HPL 286
Query: 70 EGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNP 111
+ ++P A E PN + P K +S + P G P
Sbjct: 287 QEPSQPLNLTAKPKAPELPNTSSSPSLKMSSCVPRPPSHGGP 328
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 30.4 bits (67), Expect = 2.2
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 11 PQPSGPPARKKFVIPLDEDEVPPGVAKP-LFRSTQSLPTVDTSAQAAPQTYAEYAISQPL 69
P PS P A + E + PPG AKP L S S T SA AP T A + +
Sbjct: 694 PLPSYPGANPQPAFGAAEGQ-PPGAAKPALTPSFGSSFTFGNSAAPAPATAPTPAPASTI 752
Query: 70 EGAGATCPTGSEPLAGETPNQA 91
+ A PT +P G + A
Sbjct: 753 KIVPAHVPTPIQPTFGGATHSA 774
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 2.9
Identities = 30/117 (25%), Positives = 42/117 (35%), Gaps = 17/117 (14%)
Query: 5 KDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQSLPTVDTSAQAAPQTYAEYA 64
K +G+ QPSGP P A PL LP+ S QA P +E +
Sbjct: 556 KGPQGLGQPSGPL---------------PAKASPLSTKASPLPS-KASPQAKPLRASEPS 599
Query: 65 IS-QPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSIIVSPRQRGNPVLKFVRNVP 120
+ ++ PT +EP+ P P V + PV+K V P
Sbjct: 600 KTPSSVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEAP 656
Score = 29.6 bits (65), Expect = 3.8
Identities = 27/111 (24%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 3 PGKDKEGVPQPSG--PPARKKFVIPLD---EDEVPPGVAKPLFRSTQSL----------- 46
P K P+P PA+ +P ++ G+ LF SL
Sbjct: 309 PTKPSTAEPRPPAGEAPAKSATAVPAGLGATEQTQEGLTGKLFGLGASLLTQASTLMSVQ 368
Query: 47 PTVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAK 97
P DT Q AP + P GS P G P +PGA+
Sbjct: 369 PEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPGAR 419
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 30.0 bits (66), Expect = 2.9
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 35 VAKPLFRSTQSLPTVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKP 94
+A P+ + T+SL DTS P + P CP P T +KP
Sbjct: 867 LAPPMLKFTRSLSMPDTSEDIPPPPQSVPPSPPPPSPTTYNCPKSPTPRVYGT----IKP 922
Query: 95 GAKSNSII-VSPRQRGNPVLKFVRNVPWEFGDVIPDYVL 132
NS VSP R + V +R F + Y L
Sbjct: 923 AFNQNSAAKVSPATRSDTVATMMREKGMYFRRELDRYSL 961
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,377,334
Number of Sequences: 37866
Number of extensions: 710536
Number of successful extensions: 2529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2490
Number of HSP's gapped (non-prelim): 101
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.