Guide to the Human Genome
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Name: LOC100271715 Sequence: fasta or formatted (844aa) NCBI GI: 224282174
Description:

DH and coiled-coil domain-containing protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         73           4
 C cysteine            1.5         13           1
 D aspartate           3.4         29           1
 E glutamate          10.1         85           2
 F phenylalanine       3.7         31           2
 G glycine             5.5         46           2
 H histidine           2.5         21           1
 I isoleucine          3.1         26           1
 K lysine              7.3         62           3
 L leucine             9.6         81           3
 M methionine          2.1         18           2
 N asparagine          3.0         25           2
 P proline             7.1         60           2
 Q glutamine           6.8         57           4
 R arginine            5.3         45           2
 S serine              9.0         76           3
 T threonine           3.7         31           2
 V valine              4.1         35           3
 W tryptophan          0.8          7           2
 Y tyrosine            2.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DH and coiled-coil domain-containing protein 
NEFH                  0.018   neurofilament, heavy polypeptide 200kDa 
CENPF                 0.017   centromere protein F 
BCR                   0.016   breakpoint cluster region isoform 2 
BCR                   0.016   breakpoint cluster region isoform 1 
ECT2L                 0.016   epithelial cell transforming sequence 2 oncogene-li...
HMMR                  0.015   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.015   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.015   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.015   hyaluronan-mediated motility receptor isoform b [Ho...
FGD6                  0.015   FYVE, RhoGEF and PH domain containing 6 
ARHGEF10              0.014   Rho guanine nucleotide exchange factor 10 
ECT2                  0.014   epithelial cell transforming sequence 2 oncogene pro...
ARHGEF10L             0.013   Rho guanine nucleotide exchange factor (GEF) 10-like...
ARHGEF10L             0.013   Rho guanine nucleotide exchange factor (GEF) 10-like...
FGD1                  0.013   faciogenital dysplasia protein 
FGD3                  0.013   FYVE, RhoGEF and PH domain containing 3 
FGD3                  0.013   FYVE, RhoGEF and PH domain containing 3 
TRIO                  0.012   triple functional domain (PTPRF interacting) 
ARHGEF17              0.012   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
MAGEC1                0.011   melanoma antigen family C, 1 
AKAP9                 0.011   A-kinase anchor protein 9 isoform 2 
DNMBP                 0.011   dynamin binding protein 
CGNL1                 0.010   cingulin-like 1 
ANKRD17               0.010   ankyrin repeat domain protein 17 isoform a 
ABR                   0.010   active breakpoint cluster region-related  protein i...
ABR                   0.010   active breakpoint cluster region-related  protein is...
ABR                   0.010   active breakpoint cluster region-related  protein is...
CCHCR1                0.010   coiled-coil alpha-helical rod protein 1 isoform 1 [...
CCHCR1                0.010   coiled-coil alpha-helical rod protein 1 isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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