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Search of human proteins with 41406082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens] 191 1e-49
gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens] 164 1e-41
gi|32967607 glutathione peroxidase 2 [Homo sapiens] 87 3e-18
gi|15618997 glutathione peroxidase 7 [Homo sapiens] 64 3e-11
gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens] 63 6e-11
gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo s... 62 1e-10
gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo s... 62 1e-10
gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo sa... 62 1e-10
gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo s... 61 2e-10
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 60 5e-10
gi|33186887 glutathione peroxidase 6 [Homo sapiens] 54 3e-08
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 28 1.6
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 28 1.6
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 28 1.6
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 28 1.6
gi|48314820 5-oxoprolinase (ATP-hydrolysing) [Homo sapiens] 28 1.6
gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens] 28 2.1
gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens] 28 2.1
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 28 2.1
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 28 2.1
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 28 2.1
gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo... 26 6.0
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 26 6.0
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 26 6.0
gi|73476377 LBXCOR1 homolog [Homo sapiens] 26 6.0
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 26 7.8
>gi|41406082 glutathione peroxidase 1 isoform 2 [Homo sapiens]
Length = 98
Score = 191 bits (485), Expect = 1e-49
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASL GTTVRDYTQMN
Sbjct: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
Query: 61 ELQRRLGPRGLVVLGFPCNQFGHQVRRAERGGAGADVQ 98
ELQRRLGPRGLVVLGFPCNQFGHQVRRAERGGAGADVQ
Sbjct: 61 ELQRRLGPRGLVVLGFPCNQFGHQVRRAERGGAGADVQ 98
>gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]
Length = 203
Score = 164 bits (416), Expect = 1e-41
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASL GTTVRDYTQMN
Sbjct: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
Query: 61 ELQRRLGPRGLVVLGFPCNQFGHQ 84
ELQRRLGPRGLVVLGFPCNQFGHQ
Sbjct: 61 ELQRRLGPRGLVVLGFPCNQFGHQ 84
>gi|32967607 glutathione peroxidase 2 [Homo sapiens]
Length = 190
Score = 87.0 bits (214), Expect = 3e-18
Identities = 49/75 (65%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 10 AAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPR 69
A A+S Y SA L GE V + RG+ +LIENVASL GTT RD+TQ+NELQ R PR
Sbjct: 2 AFIAKSFYDLSAISL-DGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRF-PR 59
Query: 70 GLVVLGFPCNQFGHQ 84
LVVLGFPCNQFGHQ
Sbjct: 60 RLVVLGFPCNQFGHQ 74
>gi|15618997 glutathione peroxidase 7 [Homo sapiens]
Length = 187
Score = 63.9 bits (154), Expect = 3e-11
Identities = 38/78 (48%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 AAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRL 66
AA A Q Y F A + G + VSL RG V L+ NVAS G T + Y + +LQR L
Sbjct: 16 AACAQQEQDFYDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDL 74
Query: 67 GPRGLVVLGFPCNQFGHQ 84
GP VL FPCNQFG Q
Sbjct: 75 GPHHFNVLAFPCNQFGQQ 92
>gi|6006001 glutathione peroxidase 3 precursor [Homo sapiens]
Length = 226
Score = 62.8 bits (151), Expect = 6e-11
Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
++Y + A + G E + GK +L NVAS G T + Y ++N LQ L P GLV+L
Sbjct: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ-YIELNALQEELAPFGLVIL 97
Query: 75 GFPCNQFGHQ 84
GFPCNQFG Q
Sbjct: 98 GFPCNQFGKQ 107
>gi|90903238 glutathione peroxidase 4 isoform B precursor [Homo
sapiens]
Length = 227
Score = 62.0 bits (149), Expect = 1e-10
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
MCA+R A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+
Sbjct: 28 MCASR--DDWRCARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLV 84
Query: 61 ELQRRLGPRGLVVLGFPCNQFGHQ 84
+L R GL +L FPCNQFG Q
Sbjct: 85 DLHARYAECGLRILAFPCNQFGKQ 108
>gi|75709200 glutathione peroxidase 4 isoform A precursor [Homo
sapiens]
Length = 197
Score = 62.0 bits (149), Expect = 1e-10
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMN 60
MCA+R A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+
Sbjct: 28 MCASR--DDWRCARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLV 84
Query: 61 ELQRRLGPRGLVVLGFPCNQFGHQ 84
+L R GL +L FPCNQFG Q
Sbjct: 85 DLHARYAECGLRILAFPCNQFGKQ 108
>gi|4557629 glutathione peroxidase 5 isoform 1 precursor [Homo
sapiens]
Length = 221
Score = 61.6 bits (148), Expect = 1e-10
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
++Y + A L E VS GK +L NVA+ G T + Y ++N LQ L P GLVVL
Sbjct: 39 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVL 97
Query: 75 GFPCNQFGHQ 84
GFPCNQFG Q
Sbjct: 98 GFPCNQFGKQ 107
>gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
Length = 234
Score = 60.8 bits (146), Expect = 2e-10
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 13 AQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLV 72
A+S++ FSA+ + G V+L RG V ++ NVAS G T +YTQ+ +L R GL
Sbjct: 75 ARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLR 133
Query: 73 VLGFPCNQFGHQ 84
+L FPCNQFG Q
Sbjct: 134 ILAFPCNQFGKQ 145
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 59.7 bits (143), Expect = 5e-10
Identities = 34/76 (44%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
S YAF + A G VSL +GKV L+ NVAS T R+Y + EL + GP VL
Sbjct: 46 SFYAFEVKD-AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 104
Query: 75 GFPCNQFGHQVRRAER 90
FPCNQFG R +
Sbjct: 105 AFPCNQFGESEPRPSK 120
>gi|33186887 glutathione peroxidase 6 [Homo sapiens]
Length = 221
Score = 53.9 bits (128), Expect = 3e-08
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 15 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVL 74
++Y + A L G E + GK +L NVA+ G + Y ++N LQ L G++VL
Sbjct: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97
Query: 75 GFPCNQFGHQ 84
FPCNQFG Q
Sbjct: 98 AFPCNQFGKQ 107
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 ARLAAAAAAAQSVYAFSARPLAGGEPVSLGS-LRGKVLLIENVASLUG 50
A+L AA A+A+ + +R +G EP +GS +R L+ V SL G
Sbjct: 41 AKLGAAEASAERLQGRRSRGASGSEPQQMGSDVRDLNALLPAVPSLGG 88
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 ARLAAAAAAAQSVYAFSARPLAGGEPVSLGS-LRGKVLLIENVASLUG 50
A+L AA A+A+ + +R +G EP +GS +R L+ V SL G
Sbjct: 41 AKLGAAEASAERLQGRRSRGASGSEPQQMGSDVRDLNALLPAVPSLGG 88
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 ARLAAAAAAAQSVYAFSARPLAGGEPVSLGS-LRGKVLLIENVASLUG 50
A+L AA A+A+ + +R +G EP +GS +R L+ V SL G
Sbjct: 41 AKLGAAEASAERLQGRRSRGASGSEPQQMGSDVRDLNALLPAVPSLGG 88
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 4 ARLAAAAAAAQSVYAFSARPLAGGEPVSLGS-LRGKVLLIENVASLUG 50
A+L AA A+A+ + +R +G EP +GS +R L+ V SL G
Sbjct: 41 AKLGAAEASAERLQGRRSRGASGSEPQQMGSDVRDLNALLPAVPSLGG 88
>gi|48314820 5-oxoprolinase (ATP-hydrolysing) [Homo sapiens]
Length = 1288
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 28 EPVSLGSLRGKV--LLIENVASLUGTTVRDYT------QMNELQRRLG 67
+PV LG+LRGK+ LL + SL + YT Q+ L R LG
Sbjct: 165 QPVDLGALRGKLEGLLSRGIRSLAVVLMHSYTWAQHEQQVGVLARELG 212
>gi|221139804 RNA binding motif protein 24 isoform 3 [Homo sapiens]
Length = 178
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 AARLAAAAAAAQSVYAFSARPLAGG 27
AA AAAAAAA Y ++A P A G
Sbjct: 104 AAAAAAAAAAAYDQYPYAASPAAAG 128
>gi|23308561 RNA binding motif protein 24 isoform 2 [Homo sapiens]
Length = 191
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 AARLAAAAAAAQSVYAFSARPLAGG 27
AA AAAAAAA Y ++A P A G
Sbjct: 117 AAAAAAAAAAAYDQYPYAASPAAAG 141
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/31 (61%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 3 AARLAAAAAAA--QSVYAFSARPLAGGEPVS 31
AAR AAA AAA QSV A PLA +PVS
Sbjct: 239 AARAAAAPAAACVQSVAESPATPLAIAQPVS 269
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 3 AARLAAAAAAAQSVYAFSARPLAGGEPVS 31
AA AAAAAAA S A A P G P S
Sbjct: 360 AAAAAAAAAAASSAAAAGAPPSGGSAPCS 388
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 AARLAAAAAAAQSVYAFSARPLAGG 27
AA AAAAAAA Y ++A P A G
Sbjct: 162 AAAAAAAAAAAYDQYPYAASPAAAG 186
>gi|17978475 oligodendrocyte lineage transcription factor 2 [Homo
sapiens]
Length = 323
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 7 AAAAAAAQSVYAFSARPLAGGEPVSLGSLR 36
AAAAAAA + A S+ L G S+GS+R
Sbjct: 226 AAAAAAAAAAAAVSSASLPGSGLPSVGSIR 255
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 8 AAAAAAQSVYAFSARPLAGGEPVSLG 33
AAAAAA VY PL G P+ LG
Sbjct: 506 AAAAAAAVVYGAVPVPLLGAHPLLLG 531
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 8 AAAAAAQSVYAFSARPLAGGEPVSLG 33
AAAAAA VY PL G P+ LG
Sbjct: 506 AAAAAAAVVYGAVPVPLLGAHPLLLG 531
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSL 35
+ AA AAAAAAA + + + PL G EP L
Sbjct: 469 VAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGL 503
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 4 ARLAAAAAAAQSVYAFSARPLAGGEPVS 31
A A AAA QSV A PLA +PVS
Sbjct: 162 AAAAPAAACVQSVAESPATPLAIAQPVS 189
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,333,628
Number of Sequences: 37866
Number of extensions: 115083
Number of successful extensions: 464
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 34
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.