Guide to the Human Genome
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Name: GIPC2 Sequence: fasta or formatted (315aa) NCBI GI: 41393579
Description:

PDZ domain protein GIPC2

Referenced in:

PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         27           1
 C cysteine            1.0          3           1
 D aspartate           6.0         19           2
 E glutamate           9.5         30           2
 F phenylalanine       4.4         14           1
 G glycine            10.8         34           3
 H histidine           1.6          5           1
 I isoleucine          7.3         23           1
 K lysine              9.8         31           3
 L leucine             8.9         28           2
 M methionine          1.9          6           1
 N asparagine          1.9          6           1
 P proline             3.2         10           1
 Q glutamine           1.3          4           1
 R arginine            4.8         15           2
 S serine              5.7         18           2
 T threonine           4.8         15           2
 V valine              6.0         19           1
 W tryptophan          0.6          2           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PDZ domain protein GIPC2 
GIPC1                 0.603   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.603   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.603   regulator of G-protein signalling 19 interacting prot...
GIPC3                 0.523   GIPC PDZ domain containing family, member 3 
GIPC1                 0.497   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.497   regulator of G-protein signalling 19 interacting pro...
GIPC1                 0.497   regulator of G-protein signalling 19 interacting pro...
CASK                  0.032   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.028   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.028   calcium/calmodulin-dependent serine protein kinase ...
MPDZ                  0.028   multiple PDZ domain protein 
PDZD2                 0.027   PDZ domain containing 2 
SNTA1                 0.023   acidic alpha 1 syntrophin 
PPP1R9A               0.023   protein phosphatase 1, regulatory (inhibitor) subuni...
MPP1                  0.023   palmitoylated membrane protein 1 
MAGI2                 0.023   membrane associated guanylate kinase, WW and PDZ dom...
GRIP1                 0.022   glutamate receptor interacting protein 1 
MPP7                  0.022   palmitoylated membrane protein 7 
PICK1                 0.022   protein interacting with C kinase 1 
PICK1                 0.022   protein interacting with C kinase 1 
PICK1                 0.022   protein interacting with C kinase 1 
DLG2                  0.020   chapsyn-110 isoform 3 
DLG2                  0.020   chapsyn-110 isoform 1 
DLG2                  0.020   chapsyn-110 isoform 2 
GRIP2                 0.020   glutamate receptor interacting protein 2 
INADL                 0.018   InaD-like 
MPP3                  0.018   palmitoylated membrane protein 3 
IL16                  0.018   interleukin 16 isoform 2 
MAGI3                 0.018   membrane-associated guanylate kinase-related  3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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