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Search of human proteins with 41281996
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41281996 HEAT repeat containing 3 [Homo sapiens]
(680 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41281996 HEAT repeat containing 3 [Homo sapiens] 1328 0.0
gi|55742693 zyg-11 homolog B [Homo sapiens] 37 0.046
gi|117414148 hypothetical protein LOC221322 [Homo sapiens] 35 0.30
gi|11034811 catenin (cadherin-associated protein), delta 2 (neur... 32 1.9
gi|50540545 Barkor [Homo sapiens] 32 2.5
gi|53829376 plakophilin 4 isoform b [Homo sapiens] 31 3.3
gi|53829374 plakophilin 4 isoform a [Homo sapiens] 31 3.3
gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens] 31 3.3
gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens] 31 3.3
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 31 3.3
gi|48675811 immediate early response 2 [Homo sapiens] 31 3.3
gi|155969714 nuclear protein, ataxia-telangiectasia locus [Homo... 31 4.3
gi|4502247 armadillo repeat protein [Homo sapiens] 31 4.3
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 31 4.3
gi|19718780 semaphorin 6B precursor [Homo sapiens] 31 4.3
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 30 5.6
gi|81295809 pericentrin [Homo sapiens] 30 5.6
gi|197927454 DEK oncogene isoform 2 [Homo sapiens] 30 5.6
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 30 5.6
gi|42558250 membrane component chromosome 11 surface marker 1 is... 30 5.6
gi|42734503 membrane component chromosome 11 surface marker 1 is... 30 5.6
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 30 9.6
gi|89886480 zinedin isoform 2 [Homo sapiens] 30 9.6
gi|89886477 zinedin isoform 1 [Homo sapiens] 30 9.6
gi|28372525 bactericidal/permeability-increasing protein-like 3 ... 30 9.6
gi|221316624 dystonin isoform 4 [Homo sapiens] 30 9.6
gi|221316622 dystonin isoform 3 [Homo sapiens] 30 9.6
gi|221316618 dystonin isoform 2 [Homo sapiens] 30 9.6
gi|34577047 dystonin isoform 1 [Homo sapiens] 30 9.6
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 30 9.6
>gi|41281996 HEAT repeat containing 3 [Homo sapiens]
Length = 680
Score = 1328 bits (3437), Expect = 0.0
Identities = 680/680 (100%), Positives = 680/680 (100%)
Query: 1 MGKSRTKRFKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEKLQHPSAEVRECACA 60
MGKSRTKRFKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEKLQHPSAEVRECACA
Sbjct: 1 MGKSRTKRFKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEKLQHPSAEVRECACA 60
Query: 61 GLARLVQQRPALPGLARRDAVRRLGPLLLDPSLAVRETAAGALRNLSACGGFEVCDDMVT 120
GLARLVQQRPALPGLARRDAVRRLGPLLLDPSLAVRETAAGALRNLSACGGFEVCDDMVT
Sbjct: 61 GLARLVQQRPALPGLARRDAVRRLGPLLLDPSLAVRETAAGALRNLSACGGFEVCDDMVT 120
Query: 121 KDIMTPLVALLKECSAGLDSNEMSLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSI 180
KDIMTPLVALLKECSAGLDSNEMSLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSI
Sbjct: 121 KDIMTPLVALLKECSAGLDSNEMSLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSI 180
Query: 181 FNKEGCLEIVLKYLSRFPTNVDLAISVAYCLQTVTEDNPELLKSFSATALNMLESALLSP 240
FNKEGCLEIVLKYLSRFPTNVDLAISVAYCLQTVTEDNPELLKSFSATALNMLESALLSP
Sbjct: 181 FNKEGCLEIVLKYLSRFPTNVDLAISVAYCLQTVTEDNPELLKSFSATALNMLESALLSP 240
Query: 241 VSSMESLLLKTLVAGTIWNLKDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAET 300
VSSMESLLLKTLVAGTIWNLKDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAET
Sbjct: 241 VSSMESLLLKTLVAGTIWNLKDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAET 300
Query: 301 QRLKTAAEAEEILENTNGDDLIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALL 360
QRLKTAAEAEEILENTNGDDLIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALL
Sbjct: 301 QRLKTAAEAEEILENTNGDDLIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALL 360
Query: 361 TAQQTALEIIVNMCCNEDPSDDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHT 420
TAQQTALEIIVNMCCNEDPSDDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHT
Sbjct: 361 TAQQTALEIIVNMCCNEDPSDDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHT 420
Query: 421 ALTNYLIPKKIFEKTAFPNSIAVDLCSRNPTWKPLIRKMNTIQCRALFCLQSLVSLLDVE 480
ALTNYLIPKKIFEKTAFPNSIAVDLCSRNPTWKPLIRKMNTIQCRALFCLQSLVSLLDVE
Sbjct: 421 ALTNYLIPKKIFEKTAFPNSIAVDLCSRNPTWKPLIRKMNTIQCRALFCLQSLVSLLDVE 480
Query: 481 HLGGAAALQTLAQHLSQLLFSQPDFAKHVDFLEAISSALRALLQTMASKNISQCMTPDQL 540
HLGGAAALQTLAQHLSQLLFSQPDFAKHVDFLEAISSALRALLQTMASKNISQCMTPDQL
Sbjct: 481 HLGGAAALQTLAQHLSQLLFSQPDFAKHVDFLEAISSALRALLQTMASKNISQCMTPDQL 540
Query: 541 MTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKDPSLVVA 600
MTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKDPSLVVA
Sbjct: 541 MTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKDPSLVVA 600
Query: 601 GEALDALFDVFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGRGNYSTDQLCVLDNV 660
GEALDALFDVFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGRGNYSTDQLCVLDNV
Sbjct: 601 GEALDALFDVFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGRGNYSTDQLCVLDNV 660
Query: 661 KMNLRRFIAYQETVEKRLTS 680
KMNLRRFIAYQETVEKRLTS
Sbjct: 661 KMNLRRFIAYQETVEKRLTS 680
>gi|55742693 zyg-11 homolog B [Homo sapiens]
Length = 744
Score = 37.4 bits (85), Expect = 0.046
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 148 KKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDLAISV 207
K+ N+NS++ T++ LWN+ + S F + LE+ ++ L FPT + V
Sbjct: 502 KQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQKV 561
Query: 208 AYCLQTVTE 216
L + E
Sbjct: 562 LGLLNNIAE 570
>gi|117414148 hypothetical protein LOC221322 [Homo sapiens]
Length = 1257
Score = 34.7 bits (78), Expect = 0.30
Identities = 45/210 (21%), Positives = 83/210 (39%), Gaps = 42/210 (20%)
Query: 290 EMVIQMKEAETQRLKTAAEAEEILENT------NGDDLIEDDEMEGISHKRRVRRK---T 340
+ V+Q TQ K E L+N + + E+DE +++++++ +
Sbjct: 91 DTVVQQVTKRTQESKEYKEMMHYLKNIMIAVVESMINKFEEDETRNQERQKKIQKEKSHS 150
Query: 341 FVSDLLPPTDKELRETIALLTAQQTALEIIVNMC----------------CNEDPSD--- 381
+ +D +D L ++ Q L++I++ C+ PSD
Sbjct: 151 YRTDNCSDSDSSLNQSYKFC---QGKLQLILDQLDPGQPKEVRYEALQTLCSAPPSDVLN 207
Query: 382 -DEWEEL------SSSDESDAFMENSFSECGGQ-LFSPLCLSHEVHTALTNYLIPKKIFE 433
+ W L S SD F + C L SPL ++ E++T+L YL +
Sbjct: 208 CENWTTLCEKLTVSLSDPDPVFSDRILKFCAQTFLLSPLHMTKEIYTSLAKYLESYFLSR 267
Query: 434 KTAFPN-SIAVDLCSRNPTWKPLIRKMNTI 462
+ P S VD+ NP L++K+ +
Sbjct: 268 ENHIPTLSAGVDI--TNPNMTRLLKKVRLL 295
>gi|11034811 catenin (cadherin-associated protein), delta 2 (neural
plakophilin-related arm-repeat protein) [Homo sapiens]
Length = 1225
Score = 32.0 bits (71), Expect = 1.9
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 43 LLEKLQHPSAEVRECACAGLARLV------QQRPALPGLARRDAVRRLGPLLLDPSLAVR 96
L++ L H EV AC L LV + AL A+ RL L L +R
Sbjct: 597 LVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRL--LRKTTDLEIR 654
Query: 97 ETAAGALRNLSACGGFEV 114
E G L NLS+C ++
Sbjct: 655 ELVTGVLWNLSSCDALKM 672
>gi|50540545 Barkor [Homo sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 610 VFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGRGNYSTDQL 654
V+ DG++ ER + + LS LK Q F+ ++ K G + TDQL
Sbjct: 65 VYFDGRDRERFIDKKERLSRLKSKQEEFQKEVLKAMEGKWITDQL 109
>gi|53829376 plakophilin 4 isoform b [Homo sapiens]
Length = 1149
Score = 31.2 bits (69), Expect = 3.3
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 37 DGPAAELLEKLQHPSAEVRECACAGLARLV-QQRPALPGLARRDAVRRLGPLLLDPSLAV 95
D E++ LQH V+ A A L L + R ++ L LL L V
Sbjct: 527 DPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEVCRLGGIKHLVDLLDHRVLEV 586
Query: 96 RETAAGALRNLSACGGFEVCDDMVTKDIMTPLVALLKECSAGLDSNEMSLQEKKDQNRNS 155
++ A GALRNL G ++ + + + ALL+ +D+ L
Sbjct: 587 QKNACGALRNL--VFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVREL---------- 634
Query: 156 IENIANETVNVLWNICECSSRAVSI 180
VLWN+ C + ++I
Sbjct: 635 -------VTGVLWNLSSCDAVKMTI 652
>gi|53829374 plakophilin 4 isoform a [Homo sapiens]
Length = 1192
Score = 31.2 bits (69), Expect = 3.3
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 37 DGPAAELLEKLQHPSAEVRECACAGLARLV-QQRPALPGLARRDAVRRLGPLLLDPSLAV 95
D E++ LQH V+ A A L L + R ++ L LL L V
Sbjct: 527 DPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEVCRLGGIKHLVDLLDHRVLEV 586
Query: 96 RETAAGALRNLSACGGFEVCDDMVTKDIMTPLVALLKECSAGLDSNEMSLQEKKDQNRNS 155
++ A GALRNL G ++ + + + ALL+ +D+ L
Sbjct: 587 QKNACGALRNL--VFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVREL---------- 634
Query: 156 IENIANETVNVLWNICECSSRAVSI 180
VLWN+ C + ++I
Sbjct: 635 -------VTGVLWNLSSCDAVKMTI 652
>gi|29893564 microspherule protein 1 isoform 1 [Homo sapiens]
Length = 462
Score = 31.2 bits (69), Expect = 3.3
Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 49/265 (18%)
Query: 202 DLAISVAYCLQTVTEDNPELLKSFSATAL-NMLESALLSPVSSMESLLLKTLVAGTIWNL 260
D IS C Q + + +PE + + + AL + E LLS V S L+T
Sbjct: 181 DPVISKLAC-QAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETF-------- 231
Query: 261 KDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAEAEEILENTNGDD 320
+D++ A + K L +++ Q E Q ++ + +++L ++ +D
Sbjct: 232 QDLLHRHPDAFYLARTAKALQA-----HWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAED 286
Query: 321 LIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALLTAQQTALEIIVNMCCNEDPS 380
LI+D +++ + R + L D+ + I L + +++V
Sbjct: 287 LIDDSKLKDM-------RDEVLEHELMVADRRQKREIRQLEQELHKWQVLV--------- 330
Query: 381 DDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHTALTNYLIPKKIFEKTAFPNS 440
D +SS D F + + G++ L S E+ + N
Sbjct: 331 -DSITGMSSPD----FDNQTLAVLRGRMVRYLMRSREI------------TLGRATKDNQ 373
Query: 441 IAVDLCSRNPTWKPLIRKMNTIQCR 465
I VDL P WK + RK I+ +
Sbjct: 374 IDVDLSLEGPAWK-ISRKQGVIKLK 397
>gi|59799166 microspherule protein 1 isoform 2 [Homo sapiens]
Length = 475
Score = 31.2 bits (69), Expect = 3.3
Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 49/265 (18%)
Query: 202 DLAISVAYCLQTVTEDNPELLKSFSATAL-NMLESALLSPVSSMESLLLKTLVAGTIWNL 260
D IS C Q + + +PE + + + AL + E LLS V S L+T
Sbjct: 194 DPVISKLAC-QAMRQLHPEAIAAIQSKALFSKAEEQLLSKVGSTSQPTLETF-------- 244
Query: 261 KDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAEAEEILENTNGDD 320
+D++ A + K L +++ Q E Q ++ + +++L ++ +D
Sbjct: 245 QDLLHRHPDAFYLARTAKALQA-----HWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAED 299
Query: 321 LIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALLTAQQTALEIIVNMCCNEDPS 380
LI+D +++ + R + L D+ + I L + +++V
Sbjct: 300 LIDDSKLKDM-------RDEVLEHELMVADRRQKREIRQLEQELHKWQVLV--------- 343
Query: 381 DDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHTALTNYLIPKKIFEKTAFPNS 440
D +SS D F + + G++ L S E+ + N
Sbjct: 344 -DSITGMSSPD----FDNQTLAVLRGRMVRYLMRSREI------------TLGRATKDNQ 386
Query: 441 IAVDLCSRNPTWKPLIRKMNTIQCR 465
I VDL P WK + RK I+ +
Sbjct: 387 IDVDLSLEGPAWK-ISRKQGVIKLK 410
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
sapiens]
Length = 1478
Score = 31.2 bits (69), Expect = 3.3
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 290 EMVIQMKEAETQRLKTAAEAEEILENTNGDDL--IEDDEMEGISHKRRVRRKTFVSDLLP 347
E ++Q KE E Q+L+ E + L +L +E + + + + P
Sbjct: 699 EAILQSKEGECQQLREEVEQCQQLAEARHRELRALESQCQQQTQLIEVLTAEKGQQGVGP 758
Query: 348 PTDKELRETIALLTAQQTALEI 369
PTD E RE A L Q LE+
Sbjct: 759 PTDNEARELAAQLALSQAQLEV 780
>gi|48675811 immediate early response 2 [Homo sapiens]
Length = 223
Score = 31.2 bits (69), Expect = 3.3
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 6 TKRFKRPQFSPTGDCQAEAAAAANGTGGEEDDGPAAELLEKLQHPSAEVRECACAGLARL 65
+++ + S GD + A EE++G ++E+ ++LQ P A+ E A LAR+
Sbjct: 119 SRKRRSSSLSDGGDAGLVPSKKARLEEKEEEEGASSEVADRLQPPPAQA-EGAFPNLARV 177
Query: 66 VQQR 69
+Q+R
Sbjct: 178 LQRR 181
>gi|155969714 nuclear protein, ataxia-telangiectasia locus [Homo
sapiens]
Length = 1427
Score = 30.8 bits (68), Expect = 4.3
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 523 LQTMASKNISQCMTPDQLMTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKN 582
LQ ++NI++ +T D + ++ ++ LG+ + E+ +
Sbjct: 259 LQEKLAENINKFLTSDNNIAQVPKQTDNNPTEPETSIDEFLGLPSEIHMSEEAIQD---- 314
Query: 583 IGCFLLEVTTKDPSLVVAGEALDALFDVFADGKEAERASIQIKLLSALKEFQP--VFKMK 640
+LE T DP A ALFD+F GK +I + S E P V +
Sbjct: 315 ----ILEQTESDP-------AFQALFDLFDYGKTKNNKNISQSISSQPMESNPSIVLADE 363
Query: 641 IRKEGRGNYSTDQ 653
+G++ T++
Sbjct: 364 TNLAVKGSFETEE 376
>gi|4502247 armadillo repeat protein [Homo sapiens]
Length = 962
Score = 30.8 bits (68), Expect = 4.3
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 43 LLEKLQHPSAEVRECACAGLARLVQQRPALPGLARRD-----AVRRLGPLLLDPSLAVRE 97
L+ L HP AEVR AC L L R A RD A+ RL D VRE
Sbjct: 405 LVALLDHPRAEVRRRACGALRNLSYGRDTDNKAAIRDCGGVPALVRLLRAARDNE--VRE 462
Query: 98 TAAGALRNLSA 108
G L NLS+
Sbjct: 463 LVTGTLWNLSS 473
Score = 29.6 bits (65), Expect = 9.6
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 249 LKTLVAGTIWNLKDIIPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAE 308
++ LV GT+WNL P K I + L + EV+ +G +E AE
Sbjct: 460 VRELVTGTLWNLSSYEPLK-MVIIDHGLQTLTHEVIVPHSG----WEREPNEDSKPRDAE 514
Query: 309 AEEILENTNGDDLIEDDEMEGISHKRRVRRKTFVSDLL 346
+ +NT+G + + +G +RR+R + D L
Sbjct: 515 WTTVFKNTSG--CLRNVSSDGAEARRRLRECEGLVDAL 550
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 30.8 bits (68), Expect = 4.3
Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 27/204 (13%)
Query: 304 KTAAEAEEILENTNGDDLIEDDEMEGISHKRRVRRKTFVSDLLPPTDKELRETIALLTAQ 363
K E E++ E N DD +DDE +G+ + S + P + R +
Sbjct: 220 KKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKR-AVKRPAPA 278
Query: 364 QTALEIIVNMCCNEDPSDDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHTALT 423
+++ + E S D+ EEL+ SD S E+ + +
Sbjct: 279 KSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNK---------------K 323
Query: 424 NYLIPKKIFE-KTAFPNSIAVDLCSRNPTWKPLIRKMNTIQCRALFCLQSLVSLLDVEHL 482
+P + E KT F +++ D S L+++ ++ +V D EH
Sbjct: 324 KRKLPSDVNEGKTVFIRNLSFD--SEEEELGELLQQFGELK------YVRIVLHPDTEHS 375
Query: 483 GGAAALQTLAQHLSQ--LLFSQPD 504
G A Q + Q +Q LL + P+
Sbjct: 376 KGCAFAQFMTQEAAQKCLLAASPE 399
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 30.8 bits (68), Expect = 4.3
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 21/98 (21%)
Query: 335 RVRRKTFVSD--------LLPPTDKELRETIALLTAQQTALEIIVNMCCNEDPSDDEWEE 386
RV R F+ D L PPT ELR L + +N+C + + E
Sbjct: 72 RVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWRSNPS---DINVCRMKGKQEGECRN 128
Query: 387 ----LSSSDESDAFMENSFSECGGQLFSPLCLSHEVHT 420
L DES F+ CG F+P+C ++ + T
Sbjct: 129 FVKVLLLRDESTLFV------CGSNAFNPVCANYSIDT 160
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 30.4 bits (67), Expect = 5.6
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 273 INALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAEAEEILENTNGDDLIEDDEMEGISH 332
+N L+ E + + +++ QM++ ETQ+ K A + IL EM+ +
Sbjct: 696 LNENLRRNIERINNEIDQLMNQMQQIETQQRKFKASRDSIL-----------SEMKMLKE 744
Query: 333 KRRVRRKTFVSDLLPPTDKELRETIALLTAQQTALE 368
KR+ KTF+ P + L+ A L A ++ E
Sbjct: 745 KRQQSEKTFM-----PKQRSLQSLEASLHAMESTRE 775
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 30.4 bits (67), Expect = 5.6
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 21/149 (14%)
Query: 294 QMKEAETQRLKTAAEAEEILENTNG-DDLIEDDEMEGISHKRRVRR-KTFVSDLLPPTDK 351
Q+ A T R + + E++L T+ +DL + + E H+ + + + + L +K
Sbjct: 473 QLDSARTSRQELSELHEQLLARTSRVEDLEQLKQREKTQHESELEQLRIYFEKKLRDAEK 532
Query: 352 ELRETIALLT-----AQQTAL--EIIVNMCC---NEDPSD---DEWEELSSSDESDAF-- 396
+E + LL A++ AL + V + C E P D +EL ++
Sbjct: 533 TYQEDLTLLQQRLQGAREDALLDSVEVGLSCVGLEEKPEKGRKDHVDELEPERHKESLPR 592
Query: 397 ----MENSFSECGGQLFSPLCLSHEVHTA 421
+E S L SPLC+ HE H +
Sbjct: 593 FQAELEESHRHQLEALESPLCIQHEGHVS 621
>gi|197927454 DEK oncogene isoform 2 [Homo sapiens]
Length = 341
Score = 30.4 bits (67), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 347 PPTDKELRETIALLTAQQTALEIIVNMCCNE 377
PPTD+EL+ETI L A E+ + C +
Sbjct: 285 PPTDEELKETIKKLLASANLEEVTMKQICKK 315
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 30.4 bits (67), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 347 PPTDKELRETIALLTAQQTALEIIVNMCCNE 377
PPTD+EL+ETI L A E+ + C +
Sbjct: 319 PPTDEELKETIKKLLASANLEEVTMKQICKK 349
>gi|42558250 membrane component chromosome 11 surface marker 1
isoform 1 [Homo sapiens]
Length = 709
Score = 30.4 bits (67), Expect = 5.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 275 ALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAEAEEILENTNGDDLIEDDEMEGIS 331
AL + + + + A + +EAE +RLKT E + +L+ GDD + D +G++
Sbjct: 118 ALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKL-GDDEVRTDLKQGLN 173
>gi|42734503 membrane component chromosome 11 surface marker 1
isoform 2 [Homo sapiens]
Length = 694
Score = 30.4 bits (67), Expect = 5.6
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 275 ALLKILSEVLGMDAGEMVIQMKEAETQRLKTAAEAEEILENTNGDDLIEDDEMEGIS 331
AL + + + + A + +EAE +RLKT E + +L+ GDD + D +G++
Sbjct: 118 ALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKL-GDDEVRTDLKQGLN 173
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 29.6 bits (65), Expect = 9.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 19 DCQAEAAAAANGTGGEEDDGPAAELLEKLQ--HPSAEVRE 56
+ +AEA A A+GT G +D G + L K Q H S ++E
Sbjct: 198 EAEAEAVAVASGTAGGDDGGASGRPLPKAQPGHRSYNLQE 237
>gi|89886480 zinedin isoform 2 [Homo sapiens]
Length = 760
Score = 29.6 bits (65), Expect = 9.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 285 GMDAGEMVIQMKEAETQRLKTAAEAE-------------EILENTNGDDLIEDDEMEGIS 331
G+ GE ++ +K+ E Q + AA + L+N +D EDDE++ +
Sbjct: 228 GLSGGESLL-VKQIEEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDDELDSVQ 286
Query: 332 HKRRVRRKTFVSDLLPPTDKELRE 355
HK++ R K L+P + E E
Sbjct: 287 HKKQ-RVKLPSKALVPEMEDEDEE 309
>gi|89886477 zinedin isoform 1 [Homo sapiens]
Length = 753
Score = 29.6 bits (65), Expect = 9.6
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 285 GMDAGEMVIQMKEAETQRLKTAAEAE-------------EILENTNGDDLIEDDEMEGIS 331
G+ GE ++ +K+ E Q + AA + L+N +D EDDE++ +
Sbjct: 228 GLSGGESLL-VKQIEEQIKRNAAGKDGKERLGGSVLGQIPFLQNCEDEDSDEDDELDSVQ 286
Query: 332 HKRRVRRKTFVSDLLPPTDKELRE 355
HK++ R K L+P + E E
Sbjct: 287 HKKQ-RVKLPSKALVPEMEDEDEE 309
>gi|28372525 bactericidal/permeability-increasing protein-like 3
[Homo sapiens]
Length = 453
Score = 29.6 bits (65), Expect = 9.6
Identities = 50/259 (19%), Positives = 101/259 (38%), Gaps = 30/259 (11%)
Query: 59 CAGLARLVQQRPALPGLARRDAVRRLGPL--LLDPSLAVRETAAGALRNLSACGGFEVCD 116
C L L+ A PG R + + + +D S + + AA A + +
Sbjct: 6 CLALCSLLTGTRADPGALLRLGMDIMNQVQSAMDESHILEKMAAEAGKKQPGMKPIKGIT 65
Query: 117 DMVTKDIMTPLVALLKECSAGLD---SNEMSLQEKKDQNRNSIENIANETVNVLWNICEC 173
++ KD+ P++ L G+ S M++ K N +E I + +
Sbjct: 66 NLKVKDVQLPVITLNFVPGVGIFQCVSTGMTVTGKSFMGGN-MEIIVALNITATNRLLRD 124
Query: 174 SSRAVSIFNKEGCLEIVLKYLSRFPTNVDLAISVAYCLQTVTEDNPELLKSFSATALNML 233
+ +F EGC I++ + P+N+ P+++ F + L+ +
Sbjct: 125 EETGLPVFKSEGCEVILVNVKTNLPSNM----------------LPKMVNKFLDSTLHKV 168
Query: 234 ESALLSPVSSMESLLLKTLVAGTIWNLKDIIPCKSQAEIINALLK---ILSEVLGMDAGE 290
L+ P +++++L+ T NL D +P + L+ + + +D
Sbjct: 169 LPGLMCP--AIDAVLVYVNRKWT--NLSDPMPVGQMGTVKYVLMSAPATTASYIQLDFSP 224
Query: 291 MVIQMKEAETQRLKTAAEA 309
V+Q ++ +T +L A EA
Sbjct: 225 -VVQQQKGKTIKLADAGEA 242
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 29.6 bits (65), Expect = 9.6
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 144 SLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDL 203
SLQ++ DQ+ +E + N T N L ++CE V+ NK + + +
Sbjct: 2942 SLQKEMDQHFGMVE-LLNNTANSLLSVCEIDKEVVTDENK--------SLIQKVDMVTEQ 2992
Query: 204 AISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLKDI 263
S +CL+ +T+ E + S + L+ A E L + + ++ K +
Sbjct: 2993 LHSKKFCLENMTQKFKE-FQEVSKESKRQLQCA-------KEQLDIHDSLGSQAYSNKYL 3044
Query: 264 IPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAE------TQRLKTAAEAEEILENTN 317
++Q + + A LK ++ A ++V++ +++ Q A E + + +
Sbjct: 3045 TMLQTQQKSLQA-LKHQVDLAKRLAQDLVVEASDSKGTSDVLLQVETIAQEHSTLSQQVD 3103
Query: 318 GDDLIEDDEMEGISHKRRVRRKTF 341
+ +++GI H + R+ F
Sbjct: 3104 EKCSFLETKLQGIGHFQNTIREMF 3127
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 29.6 bits (65), Expect = 9.6
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 144 SLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDL 203
SLQ++ DQ+ +E + N T N L ++CE V+ NK + + +
Sbjct: 2953 SLQKEMDQHFGMVE-LLNNTANSLLSVCEIDKEVVTDENK--------SLIQKVDMVTEQ 3003
Query: 204 AISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLKDI 263
S +CL+ +T+ E + S + L+ A E L + + ++ K +
Sbjct: 3004 LHSKKFCLENMTQKFKE-FQEVSKESKRQLQCA-------KEQLDIHDSLGSQAYSNKYL 3055
Query: 264 IPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAE------TQRLKTAAEAEEILENTN 317
++Q + + A LK ++ A ++V++ +++ Q A E + + +
Sbjct: 3056 TMLQTQQKSLQA-LKHQVDLAKRLAQDLVVEASDSKGTSDVLLQVETIAQEHSTLSQQVD 3114
Query: 318 GDDLIEDDEMEGISHKRRVRRKTF 341
+ +++GI H + R+ F
Sbjct: 3115 EKCSFLETKLQGIGHFQNTIREMF 3138
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 29.6 bits (65), Expect = 9.6
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 144 SLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDL 203
SLQ++ DQ+ +E + N T N L ++CE V+ NK + + +
Sbjct: 3091 SLQKEMDQHFGMVE-LLNNTANSLLSVCEIDKEVVTDENK--------SLIQKVDMVTEQ 3141
Query: 204 AISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLKDI 263
S +CL+ +T+ E + S + L+ A E L + + ++ K +
Sbjct: 3142 LHSKKFCLENMTQKFKE-FQEVSKESKRQLQCA-------KEQLDIHDSLGSQAYSNKYL 3193
Query: 264 IPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAE------TQRLKTAAEAEEILENTN 317
++Q + + A LK ++ A ++V++ +++ Q A E + + +
Sbjct: 3194 TMLQTQQKSLQA-LKHQVDLAKRLAQDLVVEASDSKGTSDVLLQVETIAQEHSTLSQQVD 3252
Query: 318 GDDLIEDDEMEGISHKRRVRRKTF 341
+ +++GI H + R+ F
Sbjct: 3253 EKCSFLETKLQGIGHFQNTIREMF 3276
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 29.6 bits (65), Expect = 9.6
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 144 SLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDL 203
SLQ++ DQ+ +E + N T N L ++CE V+ NK + + +
Sbjct: 2913 SLQKEMDQHFGMVE-LLNNTANSLLSVCEIDKEVVTDENK--------SLIQKVDMVTEQ 2963
Query: 204 AISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLKDI 263
S +CL+ +T+ E + S + L+ A E L + + ++ K +
Sbjct: 2964 LHSKKFCLENMTQKFKE-FQEVSKESKRQLQCA-------KEQLDIHDSLGSQAYSNKYL 3015
Query: 264 IPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAE------TQRLKTAAEAEEILENTN 317
++Q + + A LK ++ A ++V++ +++ Q A E + + +
Sbjct: 3016 TMLQTQQKSLQA-LKHQVDLAKRLAQDLVVEASDSKGTSDVLLQVETIAQEHSTLSQQVD 3074
Query: 318 GDDLIEDDEMEGISHKRRVRRKTF 341
+ +++GI H + R+ F
Sbjct: 3075 EKCSFLETKLQGIGHFQNTIREMF 3098
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 29.6 bits (65), Expect = 9.6
Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 144 SLQEKKDQNRNSIENIANETVNVLWNICECSSRAVSIFNKEGCLEIVLKYLSRFPTNVDL 203
SLQ++ DQ+ +E + N T N L ++CE V+ NK + + +
Sbjct: 2587 SLQKEMDQHFGMVE-LLNNTANSLLSVCEIDKEVVTDENK--------SLIQKVDMVTEQ 2637
Query: 204 AISVAYCLQTVTEDNPELLKSFSATALNMLESALLSPVSSMESLLLKTLVAGTIWNLKDI 263
S +CL+ +T+ E + S + L+ A E L + + ++ K +
Sbjct: 2638 LHSKKFCLENMTQKFKE-FQEVSKESKRQLQCA-------KEQLDIHDSLGSQAYSNKYL 2689
Query: 264 IPCKSQAEIINALLKILSEVLGMDAGEMVIQMKEAE------TQRLKTAAEAEEILENTN 317
++Q + + A LK ++ A ++V++ +++ Q A E + + +
Sbjct: 2690 TMLQTQQKSLQA-LKHQVDLAKRLAQDLVVEASDSKGTSDVLLQVETIAQEHSTLSQQVD 2748
Query: 318 GDDLIEDDEMEGISHKRRVRRKTF 341
+ +++GI H + R+ F
Sbjct: 2749 EKCSFLETKLQGIGHFQNTIREMF 2772
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,735,207
Number of Sequences: 37866
Number of extensions: 1000264
Number of successful extensions: 3526
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3500
Number of HSP's gapped (non-prelim): 42
length of query: 680
length of database: 18,247,518
effective HSP length: 109
effective length of query: 571
effective length of database: 14,120,124
effective search space: 8062590804
effective search space used: 8062590804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.