Guide to the Human Genome
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Name: HEATR3 Sequence: fasta or formatted (680aa) NCBI GI: 41281996
Description:

HEAT repeat containing 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         64           5
 C cysteine            3.2         22           2
 D aspartate           5.4         37           2
 E glutamate           8.4         57           2
 F phenylalanine       3.2         22           1
 G glycine             4.9         33           2
 H histidine           1.2          8           1
 I isoleucine          5.1         35           2
 K lysine              5.7         39           2
 L leucine            13.2         90           3
 M methionine          2.6         18           1
 N asparagine          4.6         31           1
 P proline             3.7         25           2
 Q glutamine           4.0         27           2
 R arginine            4.7         32           2
 S serine              7.8         53           3
 T threonine           5.6         38           2
 V valine              5.9         40           2
 W tryptophan          0.6          4           1
 Y tyrosine            0.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HEAT repeat containing 3 
ZYG11B                0.009   zyg-11 homolog B 
C6orf170              0.008   hypothetical protein LOC221322 
CTNND2                0.005   catenin (cadherin-associated protein), delta 2 (neur...
KIAA0831              0.005   Barkor 
PKP4                  0.005   plakophilin 4 isoform b 
PKP4                  0.005   plakophilin 4 isoform a 
MCRS1                 0.005   microspherule protein 1 isoform 1 
MCRS1                 0.005   microspherule protein 1 isoform 2 
FYCO1                 0.005   FYVE and coiled-coil domain containing 1 
IER2                  0.005   immediate early response 2 
NPAT                  0.005   nuclear protein,  ataxia-telangiectasia locus [Homo...
ARVCF                 0.005   armadillo repeat protein 
RBM28                 0.005   RNA binding motif protein 28 
SEMA6B                0.005   semaphorin 6B precursor 
SMC3                  0.004   structural maintenance of chromosomes 3 
PCNT                  0.004   pericentrin 
DEK                   0.004   DEK oncogene isoform 2 
DEK                   0.004   DEK oncogene isoform 1 
CAPRIN1               0.004   membrane component chromosome 11 surface marker 1 is...
CAPRIN1               0.004   membrane component chromosome 11 surface marker 1 is...
SLC4A2                0.004   solute carrier family 4, anion exchanger, member 2 ...
STRN4                 0.004   zinedin isoform 2 
STRN4                 0.004   zinedin isoform 1 
BPIL3                 0.004   bactericidal/permeability-increasing protein-like 3 ...
DST                   0.004   dystonin isoform 4 
DST                   0.004   dystonin isoform 3 
DST                   0.004   dystonin isoform 2 
DST                   0.004   dystonin isoform 1 
DST                   0.004   dystonin isoform 1eA precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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