Guide to the Human Genome
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Name: FERMT3 Sequence: fasta or formatted (667aa) NCBI GI: 41281905
Description:

fermitin family homolog 3 long form

Referenced in:

Cytoskeleton
Inositol Pathways

Other entries for this name:
alt prot [663aa] fermitin family homolog 3 short form
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         49           2
 C cysteine            1.5         10           1
 D aspartate           5.8         39           2
 E glutamate           7.2         48           3
 F phenylalanine       3.9         26           2
 G glycine             6.1         41           2
 H histidine           2.5         17           1
 I isoleucine          4.8         32           1
 K lysine              5.1         34           4
 L leucine            11.8         79           3
 M methionine          1.8         12           2
 N asparagine          2.2         15           2
 P proline             5.5         37           3
 Q glutamine           5.7         38           2
 R arginine            7.3         49           2
 S serine              7.0         47           2
 T threonine           3.6         24           2
 V valine              5.5         37           2
 W tryptophan          2.2         15           2
 Y tyrosine            2.7         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fermitin family homolog 3 long form 
FERMT3                0.990   fermitin family homolog 3 short form 
FERMT2                0.533   fermitin family homolog 2 isoform 1 
FERMT1                0.529   kindlin-1 
FERMT2                0.528   fermitin family homolog 2 isoform 2 
FERMT2                0.481   fermitin family homolog 2 isoform 3 
TLN1                  0.029   talin 1 
TLN2                  0.026   talin 2 
OSBP                  0.009   oxysterol binding protein 
COL4A3BP              0.009   alpha 3 type IV collagen binding protein isoform 2 [...
COL4A3BP              0.009   alpha 3 type IV collagen binding protein isoform 3 ...
COL4A3BP              0.009   alpha 3 type IV collagen binding protein isoform 1 [H...
PLEKHA3               0.008   pleckstrin homology domain containing, family A (pho...
FARP1                 0.008   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
APBB1IP               0.007   amyloid beta (A4) precursor protein-binding, family ...
POGK                  0.007   pogo transposable element with KRAB domain 
OSBP2                 0.006   oxysterol binding protein 2 isoform a 
BMX                   0.006   BMX non-receptor tyrosine kinase 
BMX                   0.006   BMX non-receptor tyrosine kinase 
LOC653061             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
AFAP1                 0.005   actin filament associated protein 1 isoform a [Homo...
AFAP1                 0.005   actin filament associated protein 1 
TLX3                  0.005   T-cell leukemia homeobox 3 
MYO10                 0.005   myosin X 
OSBPL8                0.005   oxysterol-binding protein-like protein 8 isoform b [...
OSBPL8                0.005   oxysterol-binding protein-like protein 8 isoform a [...
TULP1                 0.005   tubby like protein 1 
FRMPD2                0.005   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.005   FERM and PDZ domain containing 2 isoform 3 
LOC728080             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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