Guide to the Human Genome
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Name: FERMT2 Sequence: fasta or formatted (633aa) NCBI GI: 201861823
Description:

fermitin family homolog 2 isoform 3

Referenced in:

Cytoskeleton
Inositol Pathways
LIM Domain Proteins

Other entries for this name:
alt prot [687aa] fermitin family homolog 2 isoform 2
alt prot [680aa] fermitin family homolog 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         39           2
 C cysteine            1.4          9           1
 D aspartate           6.2         39           2
 E glutamate           6.8         43           3
 F phenylalanine       3.0         19           2
 G glycine             4.9         31           2
 H histidine           2.2         14           1
 I isoleucine          6.8         43           1
 K lysine              9.5         60           6
 L leucine            10.6         67           3
 M methionine          3.3         21           3
 N asparagine          4.4         28           2
 P proline             4.6         29           1
 Q glutamine           4.3         27           1
 R arginine            3.5         22           1
 S serine              7.0         44           2
 T threonine           5.5         35           2
 V valine              4.1         26           1
 W tryptophan          2.5         16           2
 Y tyrosine            3.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fermitin family homolog 2 isoform 3 
FERMT2                0.997   fermitin family homolog 2 isoform 2 
FERMT2                0.979   fermitin family homolog 2 isoform 1 
FERMT1                0.613   kindlin-1 
FERMT3                0.509   fermitin family homolog 3 short form 
FERMT3                0.505   fermitin family homolog 3 long form 
TLN1                  0.029   talin 1 
TLN2                  0.023   talin 2 
AFAP1L2               0.012   KIAA1914 protein isoform 1 
AFAP1L2               0.012   KIAA1914 protein isoform 2 
AFAP1                 0.009   actin filament associated protein 1 isoform a [Homo...
AFAP1                 0.009   actin filament associated protein 1 
OPA1                  0.009   optic atrophy 1 isoform 8 
OPA1                  0.009   optic atrophy 1 isoform 7 
OPA1                  0.009   optic atrophy 1 isoform 6 
OPA1                  0.009   optic atrophy 1 isoform 5 
OPA1                  0.009   optic atrophy 1 isoform 4 
OPA1                  0.009   optic atrophy 1 isoform 3 
OPA1                  0.009   optic atrophy 1 isoform 2 
OPA1                  0.009   optic atrophy 1 isoform 1 
TOPORS                0.007   topoisomerase I binding, arginine/serine-rich 
RDX                   0.006   radixin 
POLN                  0.006   DNA-directed DNA polymerase nu 
OSBP                  0.006   oxysterol binding protein 
RAD18                 0.005   postreplication repair protein hRAD18p 
MYH10                 0.005   myosin, heavy polypeptide 10, non-muscle 
OSBPL8                0.005   oxysterol-binding protein-like protein 8 isoform b [...
OSBPL8                0.005   oxysterol-binding protein-like protein 8 isoform a [...
HOMER1                0.004   homer 1 
BCCIP                 0.004   BRCA2 and CDKN1A-interacting protein isoform C [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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