Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 40806196
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40806196 U-box domain containing 5 isoform b [Homo sapiens]
(487 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40806196 U-box domain containing 5 isoform b [Homo sapiens] 1000 0.0
gi|7662344 U-box domain containing 5 isoform a [Homo sapiens] 967 0.0
gi|38327029 ubiquitination factor E4A [Homo sapiens] 41 0.002
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 40 0.005
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 40 0.005
gi|217416388 neuralized homolog 1B [Homo sapiens] 39 0.011
gi|33859668 Rabring 7 [Homo sapiens] 39 0.014
gi|31377566 ring finger protein 168 [Homo sapiens] 37 0.031
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 36 0.069
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 36 0.069
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 36 0.069
gi|7662346 ADNP homeobox 2 [Homo sapiens] 35 0.12
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 35 0.12
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 35 0.12
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 35 0.20
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li... 34 0.26
gi|13375636 PR domain containing 14 [Homo sapiens] 34 0.26
gi|20270353 tripartite motif-containing 43 [Homo sapiens] 34 0.26
gi|8923898 zinc finger protein 313 [Homo sapiens] 34 0.34
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 33 0.45
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 33 0.45
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 33 0.45
gi|37595555 ring finger protein 125 [Homo sapiens] 33 0.45
gi|56181387 STIP1 homology and U-box containing protein 1 [Homo ... 33 0.58
gi|210147600 tripartite motif-containing 64 [Homo sapiens] 33 0.76
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 33 0.76
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 33 0.76
gi|169202375 PREDICTED: tripartite motif-containing protein 64B-... 33 0.76
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 33 0.76
gi|167736355 mucin 4 isoform a [Homo sapiens] 32 1.00
>gi|40806196 U-box domain containing 5 isoform b [Homo sapiens]
Length = 487
Score = 1000 bits (2586), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
Sbjct: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
Query: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
Sbjct: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
Query: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
Sbjct: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
Query: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
Sbjct: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
Query: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
Sbjct: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
Query: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
Sbjct: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
Query: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTEQ 420
SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTEQ
Sbjct: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTEQ 420
Query: 421 PGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQ 480
PGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQ
Sbjct: 421 PGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQ 480
Query: 481 DVLRVHF 487
DVLRVHF
Sbjct: 481 DVLRVHF 487
>gi|7662344 U-box domain containing 5 isoform a [Homo sapiens]
Length = 541
Score = 967 bits (2499), Expect = 0.0
Identities = 485/541 (89%), Positives = 486/541 (89%), Gaps = 54/541 (9%)
Query: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
Sbjct: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
Query: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
Sbjct: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
Query: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
Sbjct: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
Query: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
Sbjct: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
Query: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
Sbjct: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
Query: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
Sbjct: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
Query: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTE- 419
SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCST
Sbjct: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP 420
Query: 420 ----------------------------------------------QPG-------SILG 426
+PG SILG
Sbjct: 421 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG 480
Query: 427 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 486
PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
Sbjct: 481 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
Query: 487 F 487
F
Sbjct: 541 F 541
>gi|38327029 ubiquitination factor E4A [Homo sapiens]
Length = 1073
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 250 QKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFT 308
Q+ E D +EFLDPI +M P++LPS +V +D+ST+ + S+ T DPF
Sbjct: 986 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT------DPFN 1039
Query: 309 GVAFTPHSQPLPHPSLKARIDHFLLQ 334
T Q P+ LK +I +L +
Sbjct: 1040 RSPLT-MDQIRPNTELKEKIQRWLAE 1064
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQ 317
D P+EF DP+ +M P+ LPSG ++D+S + + + P+DPF T S
Sbjct: 1098 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------PTDPFNRQTLT-ESM 1150
Query: 318 PLPHPSLKARIDHFL 332
P P LK +I ++
Sbjct: 1151 LEPVPELKEQIQAWM 1165
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQ 317
D P+EF DP+ +M P+ LPSG ++D+S + + + P+DPF T S
Sbjct: 1227 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------PTDPFNRQTLT-ESM 1279
Query: 318 PLPHPSLKARIDHFL 332
P P LK +I ++
Sbjct: 1280 LEPVPELKEQIQAWM 1294
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 38.9 bits (89), Expect = 0.011
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 25/188 (13%)
Query: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPG-CHLLGRAQTALAVIPSSIVL 359
R D G+ P + L + +A F ++ + G LLG Q++ A
Sbjct: 389 RPGGDVLLGINGRPRGRLLCVDTTQALWAFFAVRGGVAGQLRLLGTLQSSPAT-----TT 443
Query: 360 PSQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTE 419
PS Q + D F VN S ++ S LV +S + + P
Sbjct: 444 PSGSLSGSQDDSDSDMTFSVNQSSSASESSLVTAPSSPLSPPVSPVFSPP---------- 493
Query: 420 QPGSILGPECASCKRVFSPYFKKEPVYQLPCGHL-LCRPCLGEKQRSLPMTCTACQRPVA 478
+P I EC C + + CGH+ LC C +R C C+RP+
Sbjct: 494 EPAGIKNGECTVC------FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPI- 546
Query: 479 SQDVLRVH 486
+DV++++
Sbjct: 547 -KDVIKIY 553
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 38.5 bits (88), Expect = 0.014
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 392 LPTTSEHTAKKMKATNEPSLTHMDCSTEQPGSILGPECASCKRVFSPYFKKEPVYQLPCG 451
L T A K K T+ P++T Q +G EC CK Y +E V QLPC
Sbjct: 196 LENTGPPPADKEKITSLPTVT-----VTQEQVDMGLECPVCKE---DYTVEEEVRQLPCN 247
Query: 452 HLLCRPCLGEKQRSLPMTCTACQRPVASQDVLR 484
H C+ L TC C++ + +D R
Sbjct: 248 HFFHSSCI-VPWLELHDTCPVCRKSLNGEDSTR 279
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 37.4 bits (85), Expect = 0.031
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 428 ECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVAS 479
+C C + EPV LPC H LC+PC + C C+R V+S
Sbjct: 15 QCGICMEILV-----EPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 60
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 36.2 bits (82), Expect = 0.069
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 399 TAKKMKA-----TNEPSLTHMDCSTEQPGSILGPECASCKRVF----SPYFKKEPVY--- 446
++KKM + TN P H D S P + PE K F +K E +
Sbjct: 3 SSKKMDSPGALQTNPPLKLHTDRSAGTP--VFVPEQGGYKEKFVKTVEDKYKCEKCHLVL 60
Query: 447 ----QLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLR 484
Q CGH C C+ S CTACQ + V +
Sbjct: 61 CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFK 102
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 36.2 bits (82), Expect = 0.069
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 399 TAKKMKA-----TNEPSLTHMDCSTEQPGSILGPECASCKRVF----SPYFKKEPVY--- 446
++KKM + TN P H D S P + PE K F +K E +
Sbjct: 3 SSKKMDSPGALQTNPPLKLHTDRSAGTP--VFVPEQGGYKEKFVKTVEDKYKCEKCHLVL 60
Query: 447 ----QLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLR 484
Q CGH C C+ S CTACQ + V +
Sbjct: 61 CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFK 102
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 36.2 bits (82), Expect = 0.069
Identities = 29/102 (28%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 399 TAKKMKA-----TNEPSLTHMDCSTEQPGSILGPECASCKRVF----SPYFKKEPVY--- 446
++KKM + TN P H D S P + PE K F +K E +
Sbjct: 3 SSKKMDSPGALQTNPPLKLHTDRSAGTP--VFVPEQGGYKEKFVKTVEDKYKCEKCHLVL 60
Query: 447 ----QLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLR 484
Q CGH C C+ S CTACQ + V +
Sbjct: 61 CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVFK 102
>gi|7662346 ADNP homeobox 2 [Homo sapiens]
Length = 1131
Score = 35.4 bits (80), Expect = 0.12
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 23/197 (11%)
Query: 196 QPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQPESQQ-APSSLQKLAE 254
QP ++ V S+L + P + L P P+ PG P S P LQ ++
Sbjct: 376 QPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGPINRPVGPGVLPVSPSVTPGVLQAVSP 435
Query: 255 IIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTP 314
+ V + ++P + P+G++ + AT G +P+ P
Sbjct: 436 GVLSVSR----AVPSGVLPAGQMTPAGQMTPAGVIP---GQTATSGVLPTGQMVQSGVLP 488
Query: 315 HSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPD 374
Q P L PG R +A V+PS ++ P+Q + + VP
Sbjct: 489 VGQTAPSRVLP------------PGQTAPLRVISAGQVVPSGLLSPNQ--TVSSSAVVP- 533
Query: 375 SNFGVNASCFSATSPLV 391
N GVN+ + P+V
Sbjct: 534 VNQGVNSGVLQLSQPVV 550
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 35.4 bits (80), Expect = 0.12
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 449 PCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 486
PCGHLLC CL Q S TC C+ + + + ++
Sbjct: 319 PCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIY 356
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 35.4 bits (80), Expect = 0.12
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 449 PCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 486
PCGHLLC CL Q S TC C+ + + + ++
Sbjct: 365 PCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIY 402
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 34.7 bits (78), Expect = 0.20
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 261 EEFLDPITLEIMP--CPMLLPSGKVIDQSTLEKCNRSEATWGRVP---SDPFTGVAFTPH 315
+E P L++ C +LLP K E++W +P + PF +
Sbjct: 309 DEDFAPAKLQVQKILCDLLLPENL--------KEGLKESSWSSLPCTKNRPFDFHSVMEE 360
Query: 316 SQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPDS 375
SQ L PS K + + S P L RAQ+A ++ +S +P+++ +++ P
Sbjct: 361 SQSLNEPSPK-QSEEIPEVTSEPVKGSLNRAQSAQSI--NSTEMPAREDCLKRVSSEPVL 417
Query: 376 NFGVNASCFSATSPLVLPTT--SEHTAKKMKATNEP-------SLTHMDCSTEQPGSILG 426
+ L+ +E K+K E SL + D E+ +
Sbjct: 418 SVQEKGVLLKRKLSLLEQDVIVNEDGRNKLKKQGETPNEVCMFSLAYGDIP-EELIDVSD 476
Query: 427 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCL 459
EC+ C R+F EPV PCGH C+ CL
Sbjct: 477 FECSLCMRLFF-----EPV-TTPCGHSFCKNCL 503
Score = 31.6 bits (70), Expect = 1.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 429 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQ 474
C C+ F EPV +PCGH CR CL +R L C C+
Sbjct: 123 CLGCRG-----FLSEPV-TVPCGHSYCRRCL---RRELRARCRLCR 159
>gi|88953346 PREDICTED: Tripartite motif-containing protein 43-like
protein 1 [Homo sapiens]
Length = 446
Score = 34.3 bits (77), Expect = 0.26
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 450 CGHLLCRP--CLGEKQRSLPMTCTACQRPVASQD 481
CGH CRP CL ++ P C AC+ P D
Sbjct: 30 CGHSFCRPCLCLSWEEAQSPANCPACREPSPKMD 63
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 426 GPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRV 485
G C C +VF+ + ++ HL PC+ + R P C+ C+R +D LR+
Sbjct: 399 GYRCERCGKVFTYKYYRDK-------HLKYTPCVDKGDRKFP--CSLCKRSFEKRDRLRI 449
Query: 486 H 486
H
Sbjct: 450 H 450
>gi|20270353 tripartite motif-containing 43 [Homo sapiens]
Length = 446
Score = 34.3 bits (77), Expect = 0.26
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 450 CGHLLCRP--CLGEKQRSLPMTCTACQRPVASQD 481
CGH CRP CL ++ P C AC+ P D
Sbjct: 30 CGHSFCRPCLCLSWEEAQSPANCPACREPSPKMD 63
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.34
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 429 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVA 478
C C V+ ++PV Q+PCGH+ C CL E + C C+ +A
Sbjct: 29 CPVCLEVY-----EKPV-QVPCGHVFCSACLQECLKPKKPVCGVCRSALA 72
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.45
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.45
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.45
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 33.5 bits (75), Expect = 0.45
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 428 ECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDV 482
+CA C V +PV + CGH+ CR C+ ++ TC C+ + S+ V
Sbjct: 36 DCAVCLEVLH-----QPV-RTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGV 84
>gi|56181387 STIP1 homology and U-box containing protein 1 [Homo
sapiens]
Length = 303
Score = 33.1 bits (74), Expect = 0.58
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 257 QDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHS 316
+D+P+ I+ E+M P + PSG D+ +E+ + + V P T
Sbjct: 225 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT------QE 278
Query: 317 QPLPHPSLKARIDHFLLQH 335
Q +P+ ++K ID F+ ++
Sbjct: 279 QLIPNLAMKEVIDAFISEN 297
>gi|210147600 tripartite motif-containing 64 [Homo sapiens]
Length = 449
Score = 32.7 bits (73), Expect = 0.76
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 429 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCL---GEKQRSLPMTCTACQR 475
C C F +PV + CGH CRPCL E+ R+ PM C +C++
Sbjct: 15 CCICVNYFI-----DPV-TIDCGHSFCRPCLCLCSEEGRA-PMRCPSCRK 57
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 32.7 bits (73), Expect = 0.76
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 175 ICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDC 234
IC T T C+ P C+ E + + +D +AP L + DC
Sbjct: 288 ICATSATNSRARCV--------PYPICAAETVTK----PQDMAEKDTTFEAPPLGTQPDC 335
Query: 235 DPGDQPESQQAPSSLQKLAEIIQD 258
+P PE+ +AP+S ++ D
Sbjct: 336 NP--TPENGEAPASTSPTQSLLVD 357
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 32.7 bits (73), Expect = 0.76
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 429 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTAC 473
C++C+ V + P +Q CGH C CL S P C AC
Sbjct: 34 CSACRNVL-----RRP-FQAQCGHRYCSFCLASILSSGPQNCAAC 72
>gi|169202375 PREDICTED: tripartite motif-containing protein
64B-like [Homo sapiens]
Length = 449
Score = 32.7 bits (73), Expect = 0.76
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 10/50 (20%)
Query: 429 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCL---GEKQRSLPMTCTACQR 475
C C F +PV + CGH CRPCL E+ R+ PM C +C++
Sbjct: 15 CCICVNYFI-----DPV-TIDCGHSFCRPCLCLCSEEGRA-PMRCPSCRK 57
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 32.7 bits (73), Expect = 0.76
Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 32/207 (15%)
Query: 219 QDVALQAPALPMESDCDPGDQPESQQAPSSLQKL-------AEIIQDVPEEFLDPITLEI 271
QD++ +PA+ ES D Q+ P L AE + DVP + +L +
Sbjct: 360 QDLSTISPAIIFESMFQNSDDTAIQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSL 419
Query: 272 MPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTG------------VAFTPHSQPL 319
P++L G L + A P P G P P+
Sbjct: 420 ---PLVLQPGLSEPPQPLLPASAPSAP----PPAPSLGPGSQQAAFGNPPALLQPPEVPV 472
Query: 320 PHPSLKARIDHFLLQHS------IPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVP 373
PH + A L H +PG ++ A + A + S++ P+ + +
Sbjct: 473 PHSTQFAANHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPLPAM 532
Query: 374 DSNFGVNASCFSATSPLVLPTTSEHTA 400
+ A+ +P + T + +TA
Sbjct: 533 VQTLPLGANSVLTNNPTITITPTPNTA 559
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 32.3 bits (72), Expect = 1.00
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 293 NRSEA---TWGRVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTA 349
NR+E W P D F P+ +P S + + HF + I G LLG+
Sbjct: 4703 NRTEGLLGVWNNNPEDDFR----MPNGSTIPPGSPEEMLFHFGMTWQINGTGLLGKRNDQ 4758
Query: 350 LAVIPSSIVLPSQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEP 409
L + + ++ AEH+ SN ++SC T L + HT + K +
Sbjct: 4759 LPSNFTPVFYSQLQKNSSWAEHL-ISNCDGDSSCIYDTLALRNASIGLHTREVSKNYEQA 4817
Query: 410 SLT 412
+ T
Sbjct: 4818 NAT 4820
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,729,926
Number of Sequences: 37866
Number of extensions: 1114902
Number of successful extensions: 3231
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 3174
Number of HSP's gapped (non-prelim): 140
length of query: 487
length of database: 18,247,518
effective HSP length: 106
effective length of query: 381
effective length of database: 14,233,722
effective search space: 5423048082
effective search space used: 5423048082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.