Guide to the Human Genome
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Name: UBE4A Sequence: fasta or formatted (1073aa) NCBI GI: 38327029
Description:

ubiquitination factor E4A

Referenced in:

Ring Finger Proteins
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         69           2
 C cysteine            1.8         19           1
 D aspartate           5.7         61           2
 E glutamate           7.6         82           3
 F phenylalanine       5.6         60           2
 G glycine             3.0         32           1
 H histidine           2.1         23           1
 I isoleucine          6.2         66           2
 K lysine              4.8         52           2
 L leucine            12.7        136           3
 M methionine          3.3         35           1
 N asparagine          5.5         59           4
 P proline             4.9         53           2
 Q glutamine           6.3         68           3
 R arginine            4.8         51           2
 S serine              6.2         66           3
 T threonine           4.8         51           2
 V valine              4.7         50           2
 W tryptophan          0.7          7           1
 Y tyrosine            3.1         33           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitination factor E4A 
UBE4B                 0.119   ubiquitination factor E4B isoform 2 
UBE4B                 0.119   ubiquitination factor E4B isoform 1 
STUB1                 0.011   STIP1 homology and U-box containing protein 1 
UBOX5                 0.008   U-box domain containing 5 isoform a 
UBOX5                 0.008   U-box domain containing 5 isoform b 
WDSUB1                0.005   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.005   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.005   WD repeat, sterile alpha motif and U-box domain con...
SCAPER                0.004   S-phase cyclin A-associated protein in the ER isofo...
SCAPER                0.004   S-phase cyclin A-associated protein in the ER isofo...
APOA5                 0.003   apolipoprotein AV 
FAM179B               0.003   hypothetical protein LOC23116 
MYH6                  0.003   myosin heavy chain 6 
EXOC4                 0.003   SEC8 protein isoform b 
EXOC4                 0.003   SEC8 protein isoform a 
PRPF19                0.003   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
MYH7                  0.002   myosin, heavy chain 7, cardiac muscle, beta 
SLTM                  0.002   modulator of estrogen induced transcription isoform ...
ZNF860                0.002   zinc finger protein 860 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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