Guide to the Human Genome
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Name: C19orf48 Sequence: fasta or formatted (117aa) NCBI GI: 40548384
Description:

multidrug resistance-related protein

Referenced in:

Small RNAs in RNA Processing

Other entries for this name:
alt mRNA [117aa] multidrug resistance-related protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7          9           1
 C cysteine            3.4          4           1
 D aspartate           2.6          3           1
 E glutamate           6.8          8           2
 F phenylalanine       0.0          0           0
 G glycine             7.7          9           1
 H histidine           1.7          2           1
 I isoleucine          4.3          5           1
 K lysine              0.9          1           1
 L leucine            12.8         15           3
 M methionine          1.7          2           1
 N asparagine          0.0          0           0
 P proline            11.1         13           3
 Q glutamine           3.4          4           1
 R arginine           10.3         12           3
 S serine              6.8          8           1
 T threonine           7.7          9           1
 V valine              4.3          5           1
 W tryptophan          5.1          6           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   multidrug resistance-related protein 
C19orf48              1.000   multidrug resistance-related protein 
RNF222                0.035   ring finger protein 222 
RNF222                0.035   PREDICTED: ring finger protein 222 
RNF222                0.035   PREDICTED: ring finger protein 222 
RNF222                0.035   PREDICTED: ring finger protein 222 
RUSC1                 0.022   RUN and SH3 domain containing 1 isoform c 
RUSC1                 0.022   RUN and SH3 domain containing 1 isoform a 
RUSC1                 0.022   RUN and SH3 domain containing 1 isoform d 
KDM6B                 0.022   lysine (K)-specific demethylase 6B 
LOC100131320          0.018   PREDICTED: hypothetical protein isoform 1 
EXOC3L                0.018   exocyst complex component 3-like 
COL4A1                0.018   alpha 1 type IV collagen preproprotein 
LOC100293055          0.018   PREDICTED: similar to COL22A1 protein 
APLP1                 0.018   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.018   amyloid precursor-like protein 1 isoform 1 precursor...
COL22A1               0.018   collagen, type XXII, alpha 1 
TTLL8                 0.018   tubulin tyrosine ligase-like family, member 8 [Homo...
VWA5B2                0.013   von Willebrand factor A domain containing 5B2 [Homo...
FAT4                  0.013   FAT tumor suppressor homolog 4 
ZNF764                0.013   zinc finger protein 764 
TET3                  0.013   tet oncogene family member 3 
LOC100293838          0.009   PREDICTED: hypothetical protein 
LOC728503             0.009   PREDICTED: hypothetical protein 
LOC100288196          0.009   PREDICTED: hypothetical protein 
LOC728503             0.009   PREDICTED: hypothetical protein 
LOC100130837          0.009   PREDICTED: hypothetical protein 
LOC100288196          0.009   PREDICTED: hypothetical protein XP_002343792 
LOC728503             0.009   PREDICTED: hypothetical protein 
LOC100130837          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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