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Search of human proteins with 40317620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40317620 transmembrane prostate androgen-induced protein
isoform c [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40317620 transmembrane prostate androgen-induced protein isof... 498 e-141
gi|40317618 transmembrane prostate androgen-induced protein isof... 498 e-141
gi|40317616 transmembrane prostate androgen-induced protein isof... 498 e-141
gi|21361841 transmembrane prostate androgen-induced protein isof... 498 e-141
gi|41281943 hypothetical protein LOC753 isoform alpha 1 [Homo sa... 305 2e-83
gi|4757884 hypothetical protein LOC753 isoform beta 1 [Homo sapi... 305 2e-83
gi|51093708 hypothetical protein LOC753 isoform gamma 1 [Homo sa... 305 2e-83
gi|41281957 hypothetical protein LOC753 isoform alpha 2 [Homo sa... 282 2e-76
gi|41281948 hypothetical protein LOC753 isoform beta 2 [Homo sap... 282 2e-76
gi|51093710 hypothetical protein LOC753 isoform gamma 2 [Homo sa... 282 2e-76
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 40 0.002
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 40 0.002
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.002
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 39 0.004
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 36 0.025
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 36 0.025
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 36 0.025
gi|55750053 atrophin-1 [Homo sapiens] 35 0.057
gi|55750041 atrophin-1 [Homo sapiens] 35 0.057
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 35 0.074
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 35 0.074
gi|241982780 programmed cell death 6 interacting protein isoform... 34 0.097
gi|22027538 programmed cell death 6 interacting protein isoform ... 34 0.097
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 34 0.097
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 34 0.097
gi|169234649 smoothelin-like 2 isoform 2 [Homo sapiens] 33 0.22
gi|169234647 smoothelin-like 2 isoform 1 [Homo sapiens] 33 0.22
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi... 32 0.37
gi|13876384 cell division cycle associated 3 [Homo sapiens] 32 0.37
gi|190341097 rhomboid family 1 [Homo sapiens] 32 0.48
>gi|40317620 transmembrane prostate androgen-induced protein isoform
c [Homo sapiens]
Length = 237
Score = 498 bits (1282), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY
Sbjct: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
Query: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
Sbjct: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
Query: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP
Sbjct: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
Query: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
Sbjct: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
>gi|40317618 transmembrane prostate androgen-induced protein isoform
c [Homo sapiens]
Length = 237
Score = 498 bits (1282), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY
Sbjct: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
Query: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
Sbjct: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
Query: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP
Sbjct: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
Query: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
Sbjct: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
>gi|40317616 transmembrane prostate androgen-induced protein isoform
b [Homo sapiens]
Length = 252
Score = 498 bits (1282), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY
Sbjct: 16 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 75
Query: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
Sbjct: 76 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 135
Query: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP
Sbjct: 136 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 195
Query: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
Sbjct: 196 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 252
>gi|21361841 transmembrane prostate androgen-induced protein isoform
a [Homo sapiens]
Length = 287
Score = 498 bits (1282), Expect = e-141
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 60
MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY
Sbjct: 51 MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVY 110
Query: 61 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 120
APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR
Sbjct: 111 APPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLR 170
Query: 121 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 180
DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP
Sbjct: 171 DPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPP 230
Query: 181 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 237
TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL
Sbjct: 231 TYSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGHPL 287
>gi|41281943 hypothetical protein LOC753 isoform alpha 1 [Homo
sapiens]
Length = 306
Score = 305 bits (781), Expect = 2e-83
Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 7/234 (2%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S G E +
Sbjct: 77 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHA 134
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 135 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 194
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 195 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 254
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 255 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 304
>gi|4757884 hypothetical protein LOC753 isoform beta 1 [Homo
sapiens]
Length = 248
Score = 305 bits (781), Expect = 2e-83
Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 7/234 (2%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S G E +
Sbjct: 19 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHA 76
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 77 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 136
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 137 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 196
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 197 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 246
>gi|51093708 hypothetical protein LOC753 isoform gamma 1 [Homo
sapiens]
Length = 269
Score = 305 bits (781), Expect = 2e-83
Identities = 156/234 (66%), Positives = 176/234 (75%), Gaps = 7/234 (2%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L EGCLWPS+S G E +
Sbjct: 40 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLWPSDSAAPRLGASE--IMHA 97
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 98 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 157
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 158 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 217
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 218 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 267
>gi|41281957 hypothetical protein LOC753 isoform alpha 2 [Homo
sapiens]
Length = 288
Score = 282 bits (721), Expect = 2e-76
Identities = 148/234 (63%), Positives = 167/234 (71%), Gaps = 25/234 (10%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L PQ+
Sbjct: 77 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGL--------------------PQIMHA 116
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 117 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 176
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 177 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 236
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 237 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 286
>gi|41281948 hypothetical protein LOC753 isoform beta 2 [Homo
sapiens]
Length = 230
Score = 282 bits (721), Expect = 2e-76
Identities = 148/234 (63%), Positives = 167/234 (71%), Gaps = 25/234 (10%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L PQ+
Sbjct: 19 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGL--------------------PQIMHA 58
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 59 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 118
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 119 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 178
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 179 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 228
>gi|51093710 hypothetical protein LOC753 isoform gamma 2 [Homo
sapiens]
Length = 251
Score = 282 bits (721), Expect = 2e-76
Identities = 148/234 (63%), Positives = 167/234 (71%), Gaps = 25/234 (10%)
Query: 3 VMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAP 62
VMVVVI CLL+HYK+S RSFI+R +Q RRRED L PQ+
Sbjct: 40 VMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGL--------------------PQIMHA 79
Query: 63 PRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 122
PR DR P F QR+RF RFQPTYPY+QHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP
Sbjct: 80 PRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDP 139
Query: 123 EQQLELNRESVRAPPNRTIFDSDLMDSARL-GGPCPPSSNSGISATCYGSGGRMEGPPPT 181
EQQ+ELNRESVRAPPNRTIFDSDL+D A GGPCPPSSNSGISA+ S GRMEGPPPT
Sbjct: 140 EQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPT 199
Query: 182 YSEVIGHYPGSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAIWSKEKDKQKGH 235
YSEV+GH+PG+SF H Q S + G+RL ES + K KD++ G+
Sbjct: 200 YSEVMGHHPGASFLHHQRS---NAHRGSRLQFQQ-NNAESTIVPIKGKDRKPGN 249
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 40.0 bits (92), Expect = 0.002
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 34 DALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHE 93
DALS E L + T +G+ P PQ PP P PP +Q+ P P Q
Sbjct: 358 DALSLEQQLPYAFFTQAGSQQPPPQPQPPPPP------PPASQQ------PPPPPPPQAP 405
Query: 94 IDLP------PTISLSDGEEPPP--YQGPCTLQLRDPEQ--QLELNRESVRAPPNRTIFD 143
+ LP P+ SL+ G +PPP P +L PE Q + + AP +
Sbjct: 406 VRLPPGGPLLPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRT 465
Query: 144 SDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQ 198
S S P P SN G S G P ++ +G G ++ QQ
Sbjct: 466 S--AGSPANQSPTSPVSNQGFS----------PGSSPQHTSTLGSVFGDAYYEQQ 508
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 40.0 bits (92), Expect = 0.002
Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 34/175 (19%)
Query: 34 DALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHE 93
DALS E L + T +G+ P PQ PP P PP +Q+ P P Q
Sbjct: 342 DALSLEQQLPYAFFTQAGSQQPPPQPQPPPPP------PPASQQ------PPPPPPPQAP 389
Query: 94 IDLP------PTISLSDGEEPPP--YQGPCTLQLRDPEQ--QLELNRESVRAPPNRTIFD 143
+ LP P+ SL+ G +PPP P +L PE Q + + AP +
Sbjct: 390 VRLPPGGPLLPSASLTRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRT 449
Query: 144 SDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQ 198
S S P P SN G S G P ++ +G G ++ QQ
Sbjct: 450 S--AGSPANQSPTSPVSNQGFS----------PGSSPQHTSTLGSVFGDAYYEQQ 492
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 39.7 bits (91), Expect = 0.002
Identities = 38/131 (29%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 36 LSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEID 95
LSS PS S +P P A P P PP A P+ P +
Sbjct: 299 LSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLP 358
Query: 96 LPPTISLSDGE---EPPPYQGPCTLQLRDPEQ-QLELNRESVRAPPNRTIFDSDLMDSAR 151
PP S PP Q P +LQ P Q L S++APP+ S L +
Sbjct: 359 SPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLAL-SSLQATTS 417
Query: 152 LGGPCPPSSNS 162
LG P +++S
Sbjct: 418 LGSPTLQATHS 428
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 38.9 bits (89), Expect = 0.004
Identities = 48/193 (24%), Positives = 66/193 (34%), Gaps = 59/193 (30%)
Query: 12 LSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGN------------------- 52
LS ++ AR I + R D S++G PSE+ V +
Sbjct: 165 LSQFEAQARKRIPPRAHSRDSSD--SADGRATPSENLVPSSARVDKPPSVLPYFNRPPSA 222
Query: 53 ----GIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEP 108
G+P P + PP + VPP + P P LPP +++ P
Sbjct: 223 LPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPP------RLPPHLAV-----P 271
Query: 109 PPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATC 168
PP P L L + PPN T+ GP PP + SA
Sbjct: 272 PPGAIPPALHL----------NPAFFPPPNATV------------GP-PPDTYMKASAPY 308
Query: 169 YGSGGRMEGPPPT 181
G R GPPP+
Sbjct: 309 NHHGSRDSGPPPS 321
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 36.2 bits (82), Expect = 0.025
Identities = 35/129 (27%), Positives = 46/129 (35%), Gaps = 34/129 (26%)
Query: 53 GIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQ 112
G+P P + PP + VPP + P P LPP +++ PPP
Sbjct: 236 GLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPP------RLPPHLAV-----PPPGA 284
Query: 113 GPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSG 172
P L L + PPN T+ GP PP + SA G
Sbjct: 285 IPPALHL----------NPAFFPPPNATV------------GP-PPDTYMKASAPYNHHG 321
Query: 173 GRMEGPPPT 181
R GPPP+
Sbjct: 322 SRDSGPPPS 330
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 36.2 bits (82), Expect = 0.025
Identities = 35/129 (27%), Positives = 46/129 (35%), Gaps = 34/129 (26%)
Query: 53 GIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQ 112
G+P P + PP + VPP + P P LPP +++ PPP
Sbjct: 279 GLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPP------RLPPHLAV-----PPPGA 327
Query: 113 GPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSNSGISATCYGSG 172
P L L + PPN T+ GP PP + SA G
Sbjct: 328 IPPALHL----------NPAFFPPPNATV------------GP-PPDTYMKASAPYNHHG 364
Query: 173 GRMEGPPPT 181
R GPPP+
Sbjct: 365 SRDSGPPPS 373
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 36.2 bits (82), Expect = 0.025
Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 40/164 (24%)
Query: 54 IPEPQVYAPP-RPTDR---LAVPPFAQRERFH-----RFQPTYP---YLQHEIDLPPTIS 101
+P P PP RP R ++ PP H + PT P +Q+++ +PP S
Sbjct: 791 LPSPHPTRPPSRPPSRPQSVSRPP--SEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPAS 848
Query: 102 LSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGGPCPPSSN 161
P P Q P Q + PE L PP + PPSS
Sbjct: 849 NPAPTAPGPPQPPLRPQSQPPEGPL---------PPAPHL---------------PPSST 884
Query: 162 SGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSL 205
S A+ + R+ P PT S+ +P S H+ + PP+L
Sbjct: 885 SSAVASSSETSSRL--PAPTPSDFQLQFPPSQGPHKSPTPPPTL 926
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.057
Identities = 40/149 (26%), Positives = 51/149 (34%), Gaps = 44/149 (29%)
Query: 85 PTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDS 144
P+YP+ PP SLS +PP Y P P Q + + PP +
Sbjct: 406 PSYPH-----SFPPPTSLSVSNQPPKYTQPSL-----PSQAV-----WSQGPPPPPPYGR 450
Query: 145 DLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQ------ 198
L +S GP PPS +G + PP + H Q QQ
Sbjct: 451 LLANSNAHPGPFPPS-----------TGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 499
Query: 199 ------SSGP------PSLLEGTRLHHTH 215
+SGP P LEG HH H
Sbjct: 500 QQQHHGNSGPPPPGAFPHPLEGGSSHHAH 528
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.057
Identities = 40/149 (26%), Positives = 51/149 (34%), Gaps = 44/149 (29%)
Query: 85 PTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDS 144
P+YP+ PP SLS +PP Y P P Q + + PP +
Sbjct: 406 PSYPH-----SFPPPTSLSVSNQPPKYTQPSL-----PSQAV-----WSQGPPPPPPYGR 450
Query: 145 DLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQ------ 198
L +S GP PPS +G + PP + H Q QQ
Sbjct: 451 LLANSNAHPGPFPPS-----------TGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQ 499
Query: 199 ------SSGP------PSLLEGTRLHHTH 215
+SGP P LEG HH H
Sbjct: 500 QQQHHGNSGPPPPGAFPHPLEGGSSHHAH 528
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 34.7 bits (78), Expect = 0.074
Identities = 36/136 (26%), Positives = 48/136 (35%), Gaps = 31/136 (22%)
Query: 95 DLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGG 154
D PP L+ GE PP P + R P + ++ R P+ ++S S RLGG
Sbjct: 102 DAPPCCRLALGEPPPYGAAPIGIP-RPPPPRPGMHSPPPRPAPSPGTWESQPARSVRLGG 160
Query: 155 P--------------CPPSSNSGISAT------------CYGSGGRMEGPPPT----YSE 184
P CP + IS T +G G + PPP Y E
Sbjct: 161 PGGGAGGAGGGRVLECPSIRITSISPTPEPPAALEDNPDAWGDGSPRDYPPPEGFGGYRE 220
Query: 185 VIGHYPGSSFQHQQSS 200
G G+ F S
Sbjct: 221 AGGQGGGAFFSPSPGS 236
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 34.7 bits (78), Expect = 0.074
Identities = 36/136 (26%), Positives = 48/136 (35%), Gaps = 31/136 (22%)
Query: 95 DLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGG 154
D PP L+ GE PP P + R P + ++ R P+ ++S S RLGG
Sbjct: 39 DAPPCCRLALGEPPPYGAAPIGIP-RPPPPRPGMHSPPPRPAPSPGTWESQPARSVRLGG 97
Query: 155 P--------------CPPSSNSGISAT------------CYGSGGRMEGPPPT----YSE 184
P CP + IS T +G G + PPP Y E
Sbjct: 98 PGGGAGGAGGGRVLECPSIRITSISPTPEPPAALEDNPDAWGDGSPRDYPPPEGFGGYRE 157
Query: 185 VIGHYPGSSFQHQQSS 200
G G+ F S
Sbjct: 158 AGGQGGGAFFSPSPGS 173
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 34.3 bits (77), Expect = 0.097
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 40 GCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPT 99
G P+ S G+ P PQ PP PT P + Q + P Y Y Q+ + PP
Sbjct: 785 GTAAPAPSQTPGSA-PPPQAQGPPYPTYP-GYPGYCQMPMPMGYNP-YAYGQYNMPYPPV 841
Query: 100 ISLSDGEEPPPYQGPCTLQLRDPEQQ 125
S G+ P P + P QQ
Sbjct: 842 YHQSPGQAPYPGPQQPSYPFPQPPQQ 867
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 34.3 bits (77), Expect = 0.097
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 40 GCLWPSESTVSGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPPT 99
G P+ S G+ P PQ PP PT P + Q + P Y Y Q+ + PP
Sbjct: 780 GTAAPAPSQTPGSA-PPPQAQGPPYPTYP-GYPGYCQMPMPMGYNP-YAYGQYNMPYPPV 836
Query: 100 ISLSDGEEPPPYQGPCTLQLRDPEQQ 125
S G+ P P + P QQ
Sbjct: 837 YHQSPGQAPYPGPQQPSYPFPQPPQQ 862
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 34.3 bits (77), Expect = 0.097
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 76 QRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRA 135
+R+R R P L ++D P+ ++ G PP +GP + R+ E++ E R R
Sbjct: 2059 RRDRKQRSLEKGPSLSADMDGAPSSAVGPGL--PPGEGPTGCR-RERERRQERGRSQERR 2115
Query: 136 PPNRTIFDSDLMDSA-RLGGPCPPSSNSGISA-TCYGSGGRMEGPPPTYSEVIGHYPGSS 193
P+ + + S R GG PP +S+ + G+ GP P S G GS
Sbjct: 2116 QPSSSSSEKQRFYSCDRFGGREPPKPKPSLSSHPTSPTAGQEPGPHPQGS---GSVNGSP 2172
Query: 194 FQHQQSSGPPSLLEGTRLHHTHIAPLES 221
+ P +L T + P S
Sbjct: 2173 LLSTSGASTPGRGGRRQLPQTPLTPRPS 2200
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 34.3 bits (77), Expect = 0.097
Identities = 21/49 (42%), Positives = 23/49 (46%)
Query: 50 SGNGIPEPQVYAPPRPTDRLAVPPFAQRERFHRFQPTYPYLQHEIDLPP 98
S N P P V AP P D L+ FAQ+E QP YP LPP
Sbjct: 1194 SYNNPPLPGVQAPCSPKDALSPTQFAQQEPAVVLQPLYPPSLSYCTLPP 1242
>gi|169234649 smoothelin-like 2 isoform 2 [Homo sapiens]
Length = 317
Score = 33.1 bits (74), Expect = 0.22
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 26/166 (15%)
Query: 95 DLPPTISLSDGEEPPPYQGPCTLQLRDPEQQL-ELNRESVRAPPNRTIFDSDLMDSARLG 153
D PP I+ + PP P +L LR P Q + + R S R + M +A LG
Sbjct: 22 DGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGETSAAALSPMSAATLG 81
Query: 154 G-------------PCPPSSNSGISATCYGSG-------GRMEGPP---PTYSEVIGHYP 190
G P P NS + + SG PP P S V P
Sbjct: 82 GLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASKHSNSPPLVTPPQSPVSPQPP 141
Query: 191 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAI--WSKEKDKQKG 234
+ H+Q L+ L T A A W +E KG
Sbjct: 142 AITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQETAAGKG 187
>gi|169234647 smoothelin-like 2 isoform 1 [Homo sapiens]
Length = 461
Score = 33.1 bits (74), Expect = 0.22
Identities = 43/166 (25%), Positives = 56/166 (33%), Gaps = 26/166 (15%)
Query: 95 DLPPTISLSDGEEPPPYQGPCTLQLRDPEQQL-ELNRESVRAPPNRTIFDSDLMDSARLG 153
D PP I+ + PP P +L LR P Q + + R S R + M +A LG
Sbjct: 166 DGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGETSAAALSPMSAATLG 225
Query: 154 G-------------PCPPSSNSGISATCYGSG-------GRMEGPP---PTYSEVIGHYP 190
G P P NS + + SG PP P S V P
Sbjct: 226 GLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASKHSNSPPLVTPPQSPVSPQPP 285
Query: 191 GSSFQHQQSSGPPSLLEGTRLHHTHIAPLESAAI--WSKEKDKQKG 234
+ H+Q L+ L T A A W +E KG
Sbjct: 286 AITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQETAAGKG 331
>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapiens]
Length = 1435
Score = 32.3 bits (72), Expect = 0.37
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 98 PTISLSDGE---EPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDSARLGG 154
PTI+L +G+ +PPP+Q + + P + PP R + S+ +S G
Sbjct: 1002 PTIALPEGDIEDQPPPWQPENCWEEQTPGFKSHFLSTPRAGPPGRRLVPSERANSPNPGS 1061
Query: 155 PCPPSSNSGISATCYGSGGRMEGPPPTYSE 184
P S+ S ++ + + G P E
Sbjct: 1062 PGESSACSPAASNIWEESSQAPGGPELLPE 1091
>gi|13876384 cell division cycle associated 3 [Homo sapiens]
Length = 268
Score = 32.3 bits (72), Expect = 0.37
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 90 LQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRTIFDSDLMDS 149
L E+DLP LS E+ PP+ Q P +Q+ ++E R P +
Sbjct: 118 LSSELDLPLGTQLSVEEQMPPWN-----QTEFPSKQV-FSKEEARQPTETPVASQSSDKP 171
Query: 150 ARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGT 209
+R P P S SG P S+V+G P + Q S G +L +G
Sbjct: 172 SR--DPETPRS----------SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGK 219
Query: 210 R 210
R
Sbjct: 220 R 220
>gi|190341097 rhomboid family 1 [Homo sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.48
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 82 RFQPTYPYLQHEIDLPP--TISLSDGEEPPP-YQGPCTLQLR 120
R+ P + E+DLP +SL+ E PPP Y GPC L ++
Sbjct: 112 RYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQ 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,835,722
Number of Sequences: 37866
Number of extensions: 751005
Number of successful extensions: 2018
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 168
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.