Guide to the Human Genome
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Name: CPSF7 Sequence: fasta or formatted (471aa) NCBI GI: 209862881
Description:

pre-mRNA cleavage factor I, 59 kDa subunit isoform 2

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [514aa] pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
alt prot [462aa] pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         36           2
 C cysteine            0.6          3           1
 D aspartate           6.4         30           2
 E glutamate           5.9         28           2
 F phenylalanine       2.3         11           2
 G glycine             4.9         23           2
 H histidine           3.6         17           2
 I isoleucine          4.0         19           1
 K lysine              3.4         16           1
 L leucine             6.6         31           2
 M methionine          1.1          5           1
 N asparagine          4.2         20           2
 P proline            12.7         60           5
 Q glutamine           3.0         14           2
 R arginine            9.1         43           2
 S serine             11.5         54           3
 T threonine           3.2         15           2
 V valine              6.4         30           3
 W tryptophan          0.4          2           2
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 
CPSF7                 1.000   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.971   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF6                 0.396   cleavage and polyadenylation specific factor 6, 68 ...
CCNK                  0.055   cyclin K isoform 1 
WASF2                 0.051   WAS protein family, member 2 
FMN2                  0.050   formin 2 
DIAPH1                0.047   diaphanous 1 isoform 2 
DIAPH1                0.047   diaphanous 1 isoform 1 
WASL                  0.046   Wiskott-Aldrich syndrome gene-like protein 
DIAPH2                0.043   diaphanous 2 isoform 12C 
DIAPH2                0.043   diaphanous 2 isoform 156 
SETD1B                0.043   SET domain containing 1B 
FMN1                  0.042   formin 1 
FIP1L1                0.042   FIP1 like 1 isoform 2 
TCERG1                0.042   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.042   transcription elongation regulator 1 isoform 1 [Homo...
SF3B4                 0.040   splicing factor 3b, subunit 4 
ENAH                  0.040   enabled homolog isoform a 
ENAH                  0.040   enabled homolog isoform b 
FMNL1                 0.039   formin-like 1 
APBB1IP               0.038   amyloid beta (A4) precursor protein-binding, family ...
WAS                   0.037   Wiskott-Aldrich syndrome protein 
RBM12                 0.037   RNA binding motif protein 12 
RBM12                 0.037   RNA binding motif protein 12 
PRR12                 0.037   proline rich 12 
GLTSCR1               0.037   glioma tumor suppressor candidate region gene 1 [Ho...
RBBP6                 0.036   retinoblastoma-binding protein 6 isoform 1 
INF2                  0.036   inverted formin 2 isoform 2 
INF2                  0.036   inverted formin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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